Wall clock time and date at job start Tue Mar 31 2020 17:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35915 * 117.00379 * 2 1 4 4 C 1.39137 * 120.47063 * 0.25143 * 3 2 1 5 5 C 1.38543 * 118.37115 * 180.26261 * 4 3 2 6 6 C 1.38246 * 119.22222 * 359.75144 * 5 4 3 7 7 N 1.31853 * 120.88750 * 359.97438 * 6 5 4 8 8 C 1.31843 * 121.78011 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.65630 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47263 * 90.00410 * 9 8 7 11 11 C 1.34773 * 120.00018 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00335 * 4.97733 * 11 10 9 13 13 N 1.34782 * 119.99805 * 184.97803 * 11 10 9 14 14 C 1.46920 * 120.62999 * 354.77405 * 13 11 10 15 15 C 1.53192 * 108.89365 * 233.67548 * 14 13 11 16 16 C 1.53031 * 109.31310 * 305.29643 * 15 14 13 17 17 C 1.53004 * 109.45852 * 181.38124 * 16 15 14 18 18 C 1.50709 * 109.46887 * 175.00060 * 17 16 15 19 19 H 1.07992 * 119.99864 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99608 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99807 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47484 * 89.99498 * 22 20 18 24 24 H 1.48500 * 109.47039 * 209.99733 * 22 20 18 25 25 H 1.48504 * 109.46898 * 329.99558 * 22 20 18 26 26 C 1.53041 * 109.53895 * 61.36520 * 16 15 14 27 27 C 1.47201 * 120.81146 * 174.91534 * 13 11 10 28 28 H 1.08996 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46957 * 300.00234 * 1 2 3 30 30 H 1.08997 * 109.46895 * 59.99553 * 1 2 3 31 31 H 1.08004 * 120.81681 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.38215 * 179.72568 * 5 4 3 33 33 H 1.07994 * 119.55773 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47030 * 330.00048 * 9 8 7 35 35 H 1.09000 * 109.47174 * 209.99989 * 9 8 7 36 36 H 0.97009 * 119.99546 * 359.97438 * 10 9 8 37 37 H 1.09008 * 109.58722 * 113.82105 * 14 13 11 38 38 H 1.09004 * 109.59155 * 353.53507 * 14 13 11 39 39 H 1.09008 * 109.49387 * 65.25184 * 15 14 13 40 40 H 1.09004 * 109.49973 * 185.30625 * 15 14 13 41 41 H 1.08995 * 109.46445 * 301.35465 * 16 15 14 42 42 H 1.08997 * 109.47461 * 294.99773 * 17 16 15 43 43 H 1.09002 * 109.47179 * 54.99943 * 17 16 15 44 44 H 0.97005 * 120.00041 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.50104 * 58.58643 * 26 16 15 46 46 H 1.09006 * 109.49750 * 178.68531 * 26 16 15 47 47 H 1.09000 * 109.53945 * 6.53126 * 27 13 11 48 48 H 1.09004 * 109.67937 * 246.22854 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2980 2.3841 0.0053 5 6 1.9718 3.5946 -0.0005 6 6 3.3542 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0053 8 6 3.4306 1.2949 0.0001 9 6 4.2542 0.0330 0.0001 10 7 4.5266 -0.3725 1.3813 11 6 5.2522 -1.4812 1.6275 12 8 5.7569 -2.0944 0.7069 13 7 5.4184 -1.9102 2.8944 14 6 4.9127 -1.1197 4.0248 15 6 6.0586 -0.8762 5.0118 16 6 6.6750 -2.2182 5.4130 17 6 7.7975 -1.9814 6.4253 18 6 8.3222 -3.3073 6.9129 19 1 7.8978 -4.2268 6.5380 20 6 9.3441 -3.3463 7.8377 21 7 9.8612 -2.2265 8.2938 22 14 9.9950 -4.9898 8.4416 23 1 11.1067 -5.4350 7.5634 24 1 10.4917 -4.8442 9.8335 25 1 8.9040 -5.9967 8.4081 26 6 7.2446 -2.9109 4.1728 27 6 6.1121 -3.1776 3.1763 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2184 2.3519 0.0098 32 1 1.4234 4.5250 -0.0012 33 1 3.8850 4.5380 -0.0110 34 1 5.1960 0.2138 -0.5180 35 1 3.7055 -0.7591 -0.5095 36 1 4.1852 0.1575 2.1186 37 1 4.1112 -1.6655 4.5229 38 1 4.5336 -0.1643 3.6621 39 1 6.8187 -0.2531 4.5403 40 1 5.6741 -0.3722 5.8986 41 1 5.9087 -2.8501 5.8618 42 1 8.6044 -1.4242 5.9493 43 1 7.4109 -1.4108 7.2697 44 1 10.5804 -2.2539 8.9442 45 1 7.9935 -2.2689 3.7092 46 1 7.7041 -3.8559 4.4628 47 1 6.5260 -3.5801 2.2518 48 1 5.4098 -3.8931 3.6042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564080009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:20 Heat of formation + Delta-G solvation = -57.097733 kcal Electronic energy + Delta-G solvation = -28471.488535 eV Core-core repulsion = 24525.703430 eV Total energy + Delta-G solvation = -3945.785105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89755 -41.27816 -39.16076 -38.85993 -36.16296 -35.69318 -34.02549 -33.19807 -32.20983 -31.65001 -29.85390 -28.36874 -27.66905 -26.20853 -24.13860 -23.86823 -23.63885 -23.02382 -21.47061 -20.58722 -19.36013 -18.97580 -18.39025 -18.17919 -17.53043 -16.97943 -16.76798 -16.60212 -16.50687 -15.65753 -15.39669 -15.34678 -15.10635 -14.87035 -14.77138 -14.63777 -14.49449 -14.35411 -14.05397 -13.82716 -13.65402 -13.33792 -13.10231 -13.01541 -12.70114 -12.49689 -12.36642 -12.31928 -12.30748 -12.11300 -11.79155 -11.39075 -11.29903 -11.01996 -10.82021 -10.74749 -10.59789 -10.51161 -10.26279 -9.45802 -9.44508 -8.15765 -6.24696 -0.03721 0.25452 1.41327 1.42349 1.52826 1.66124 2.10672 2.21651 2.43362 2.66684 3.01447 3.17908 3.19307 3.56884 3.79482 3.90465 4.00124 4.05825 4.07407 4.20956 4.24734 4.34641 4.39043 4.43307 4.47412 4.51625 4.52279 4.67148 4.72393 4.76817 4.81733 4.90396 4.99066 5.02312 5.08292 5.10696 5.30335 5.34459 5.37469 5.40554 5.47251 5.55245 5.60914 5.82270 5.90784 5.95008 6.21061 6.31116 6.90949 6.92187 6.96209 7.43705 7.50845 8.96154 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.002201 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.427997 B =12715.592642 C =13109.769102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.093 3.907 4 C -0.165 4.165 5 C -0.110 4.110 6 C 0.048 3.952 7 N -0.463 5.463 8 C 0.055 3.945 9 C 0.206 3.794 10 N -0.726 5.726 11 C 0.706 3.294 12 O -0.634 6.634 13 N -0.624 5.624 14 C 0.121 3.879 15 C -0.124 4.124 16 C -0.071 4.071 17 C 0.033 3.967 18 C -0.527 4.527 19 H 0.064 0.936 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.260 1.260 26 C -0.111 4.111 27 C 0.137 3.863 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.403 0.597 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.067 0.933 42 H -0.019 1.019 43 H -0.008 1.008 44 H 0.261 0.739 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.781 11.841 -17.327 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.044 3.956 4 C -0.191 4.191 5 C -0.129 4.129 6 C -0.110 4.110 7 N -0.173 5.173 8 C -0.083 4.083 9 C 0.081 3.919 10 N -0.384 5.384 11 C 0.408 3.592 12 O -0.516 6.516 13 N -0.361 5.361 14 C -0.001 4.001 15 C -0.163 4.163 16 C -0.090 4.090 17 C -0.004 4.004 18 C -0.565 4.565 19 H 0.083 0.917 20 C -0.201 4.201 21 N -0.578 5.578 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.184 1.184 26 C -0.149 4.149 27 C 0.014 3.986 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.241 0.759 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.000 1.000 43 H 0.011 0.989 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.350 11.256 -17.897 32.248 hybrid contribution -0.074 -0.219 0.911 0.940 sum -24.425 11.037 -16.986 31.732 Atomic orbital electron populations 1.23434 0.75944 1.05783 1.02774 1.86169 1.23801 1.25812 1.87865 1.19986 0.92586 0.86406 0.96591 1.22124 1.02396 0.91202 1.03366 1.22483 0.95104 0.99709 0.95647 1.23197 0.92776 0.96243 0.98781 1.67482 1.41482 0.98303 1.10028 1.20371 0.88891 0.93419 1.05642 1.19590 0.98031 0.91696 0.82550 1.45038 1.57499 1.27040 1.08838 1.15906 0.79251 0.81027 0.83020 1.90854 1.55718 1.60518 1.44524 1.47413 1.60411 1.24210 1.04017 1.21743 0.96190 0.95743 0.86473 1.21938 0.97671 0.97502 0.99141 1.21017 0.97353 0.95769 0.94823 1.19018 0.92902 0.95379 0.93096 1.21686 1.17729 0.93898 1.23204 0.91745 1.25952 0.97249 0.99924 0.96953 1.70104 1.27130 1.28471 1.32052 0.85533 0.78807 0.79924 0.77315 1.20285 1.21064 1.18439 1.21771 0.96906 1.01107 0.95117 1.21529 0.94008 0.84141 0.98925 0.86871 0.90999 0.90929 0.81045 0.80551 0.80166 0.91948 0.90438 0.75892 0.89188 0.89167 0.93609 0.89958 0.91455 1.00046 0.98932 0.93050 0.94559 0.91090 0.90552 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.83 113.37 1.11 1.21 16 2 O -0.32 -5.21 9.54 -92.60 -0.88 -6.10 16 3 C 0.09 1.53 6.67 22.60 0.15 1.68 16 4 C -0.16 -1.61 9.14 22.56 0.21 -1.41 16 5 C -0.11 -0.92 10.11 22.34 0.23 -0.70 16 6 C 0.05 0.66 11.18 84.69 0.95 1.61 16 7 N -0.46 -9.87 10.27 -183.52 -1.88 -11.76 16 8 C 0.06 1.17 6.16 42.67 0.26 1.44 16 9 C 0.21 5.32 5.75 85.63 0.49 5.81 16 10 N -0.73 -19.42 5.46 -482.30 -2.63 -22.05 16 11 C 0.71 23.63 8.30 179.05 1.49 25.11 16 12 O -0.63 -26.11 15.79 -3.99 -0.06 -26.17 16 13 N -0.62 -19.24 2.98 -836.18 -2.50 -21.74 16 14 C 0.12 3.05 6.38 86.36 0.55 3.60 16 15 C -0.12 -3.99 5.36 30.67 0.16 -3.82 16 16 C -0.07 -2.81 2.10 -10.77 -0.02 -2.83 16 17 C 0.03 1.73 4.45 29.85 0.13 1.86 16 18 C -0.53 -29.53 8.39 25.60 0.21 -29.31 16 19 H 0.06 3.43 7.05 -2.91 -0.02 3.41 16 20 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 21 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 22 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 26 C -0.11 -4.26 5.19 30.67 0.16 -4.10 16 27 C 0.14 4.48 6.45 86.31 0.56 5.04 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.27 7.69 -2.39 -0.02 0.25 16 30 H 0.07 0.25 7.71 -2.39 -0.02 0.23 16 31 H 0.17 0.55 6.45 -2.91 -0.02 0.54 16 32 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 33 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.06 7.51 -2.39 -0.02 2.04 16 36 H 0.40 9.12 5.95 -92.70 -0.55 8.57 16 37 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.09 1.83 5.64 -2.38 -0.01 1.82 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 2.89 6.91 -2.38 -0.02 2.87 16 47 H 0.08 2.68 7.01 -2.39 -0.02 2.67 16 48 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -78.50 386.88 1.87 -76.63 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.42 Total: 16.45 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 7.10 Total: 5.43 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -6.73 Total: -112.97 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.95 Total: -32.27 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -78.50 1.87 -76.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564080009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.528 kcal (2) G-P(sol) polarization free energy of solvation -78.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds