Wall clock time and date at job start Tue Mar 31 2020 17:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99688 * 2 1 4 4 C 1.53004 * 109.46927 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47198 * 64.99809 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21593 * 120.00264 * 359.72086 * 6 5 4 8 8 C 1.47541 * 119.99728 * 179.72391 * 6 5 4 9 9 C 1.40346 * 120.47745 * 179.97438 * 8 6 5 10 10 C 1.36854 * 118.49827 * 179.97438 * 9 8 6 11 11 C 1.39395 * 119.37601 * 359.97438 * 10 9 8 12 12 N 1.38454 * 119.54075 * 180.02562 * 11 10 9 13 13 C 1.46847 * 110.99974 * 304.21447 * 12 11 10 14 14 C 1.53045 * 109.52199 * 174.15764 * 13 12 11 15 15 C 1.53113 * 109.27719 * 59.18107 * 14 13 12 16 16 C 1.50704 * 109.52391 * 182.43974 * 15 14 13 17 17 H 1.07998 * 120.00247 * 119.67830 * 16 15 14 18 18 C 1.37882 * 119.99471 * 299.68373 * 16 15 14 19 19 N 1.31513 * 120.00596 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99487 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46943 * 119.99929 * 20 18 16 23 23 H 1.48494 * 109.47221 * 239.99719 * 20 18 16 24 24 C 1.53119 * 109.16110 * 302.34224 * 15 14 13 25 25 C 1.46850 * 111.00178 * 180.02562 * 12 11 10 26 26 N 1.32608 * 120.92101 * 0.02562 * 11 10 9 27 27 C 1.31672 * 121.63709 * 359.72266 * 26 11 10 28 28 H 1.08999 * 109.47565 * 60.00461 * 1 2 3 29 29 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47845 * 300.00480 * 1 2 3 31 31 H 1.09000 * 109.47229 * 59.99775 * 3 2 1 32 32 H 1.08998 * 109.47164 * 299.99298 * 3 2 1 33 33 H 1.09009 * 109.46730 * 304.99597 * 4 3 2 34 34 H 1.08998 * 109.46846 * 185.00141 * 4 3 2 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 36 36 H 1.08008 * 120.75075 * 359.95364 * 9 8 6 37 37 H 1.07994 * 120.31145 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.46709 * 294.17457 * 13 12 11 39 39 H 1.09000 * 109.46272 * 54.14156 * 13 12 11 40 40 H 1.08996 * 109.50347 * 299.23963 * 14 13 12 41 41 H 1.09008 * 109.49804 * 179.12226 * 14 13 12 42 42 H 1.09005 * 109.52715 * 62.24937 * 15 14 13 43 43 H 0.96991 * 120.00322 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.50520 * 297.71768 * 24 15 14 45 45 H 1.08998 * 109.50270 * 177.59786 * 24 15 14 46 46 H 1.08995 * 109.46512 * 305.85627 * 25 12 11 47 47 H 1.09000 * 109.45997 * 65.82684 * 25 12 11 48 48 H 1.08001 * 119.73675 * 180.28828 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 5.2891 0.3505 -1.4710 7 8 6.1072 0.6777 -0.6331 8 6 5.7330 -0.2802 -2.7287 9 6 7.0971 -0.5067 -2.9687 10 6 7.4637 -1.0949 -4.1488 11 6 6.4800 -1.4496 -5.0705 12 7 6.8470 -2.0453 -6.2652 13 6 7.8122 -1.2124 -6.9940 14 6 8.3042 -1.9646 -8.2326 15 6 7.1091 -2.2973 -9.1300 16 6 7.5795 -3.0904 -10.3220 17 1 7.1956 -4.0849 -10.4946 18 6 8.5003 -2.5461 -11.1921 19 7 8.9675 -1.3349 -10.9822 20 14 9.0840 -3.5294 -12.6693 21 1 8.4112 -4.8532 -12.6799 22 1 8.7500 -2.7950 -13.9160 23 1 10.5541 -3.7213 -12.5865 24 6 6.0967 -3.1242 -8.3325 25 6 5.6686 -2.3379 -7.0912 26 7 5.1976 -1.2244 -4.8191 27 6 4.8020 -0.6655 -3.6944 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 1.6884 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5686 0.8428 34 1 3.9783 2.1766 0.0902 35 1 3.3239 0.3027 -1.9191 36 1 7.8408 -0.2230 -2.2386 37 1 8.5052 -1.2825 -4.3638 38 1 7.3317 -0.2833 -7.3004 39 1 8.6590 -0.9865 -6.3460 40 1 8.7971 -2.8872 -7.9262 41 1 9.0089 -1.3399 -8.7817 42 1 6.6392 -1.3737 -9.4682 43 1 9.6155 -0.9522 -11.5942 44 1 6.5548 -4.0650 -8.0276 45 1 5.2240 -3.3280 -8.9530 46 1 4.9582 -2.9297 -6.5140 47 1 5.1985 -1.4033 -7.3972 48 1 3.7491 -0.5005 -3.5195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567419901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:50 Heat of formation + Delta-G solvation = -39.977290 kcal Electronic energy + Delta-G solvation = -27965.829744 eV Core-core repulsion = 24020.787038 eV Total energy + Delta-G solvation = -3945.042706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87479 -39.64682 -38.38844 -37.70205 -35.04685 -34.19985 -32.58861 -31.92426 -30.71623 -29.95281 -29.12161 -26.78956 -25.98892 -24.09416 -23.87556 -22.79778 -21.93265 -21.53715 -20.66834 -18.78339 -18.26804 -17.21415 -17.13190 -16.93147 -16.33169 -16.24964 -15.46259 -15.31664 -15.27079 -14.87660 -14.55274 -14.47122 -14.02577 -13.77521 -13.41854 -13.19587 -13.10101 -12.94236 -12.69999 -12.58930 -12.35594 -12.32011 -12.19689 -11.70718 -11.50653 -11.12270 -10.96245 -10.53826 -10.37141 -10.33570 -10.19925 -10.13602 -9.97157 -9.81135 -9.52749 -9.39945 -9.33101 -9.01998 -8.78683 -8.36454 -7.86306 -6.03167 -4.08218 0.70022 1.31965 2.78010 2.90073 3.23229 3.27889 3.36425 3.40419 3.70239 3.96737 4.33387 4.41640 4.44860 4.59253 4.70654 4.78450 4.81820 4.88366 4.91718 5.07698 5.13112 5.17176 5.26334 5.27410 5.44491 5.57622 5.63201 5.72467 5.86772 5.94871 6.05099 6.09427 6.13238 6.22935 6.33458 6.41816 6.54132 6.58656 6.75015 6.86156 6.99355 7.24471 7.25472 7.30376 7.50941 7.69558 7.94007 7.97673 8.03721 8.06166 8.40892 8.95505 9.56811 11.03422 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.002020 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.602484 B =13858.868991 C =14639.762451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.726 5.726 6 C 0.574 3.426 7 O -0.545 6.545 8 C -0.243 4.243 9 C 0.007 3.993 10 C -0.201 4.201 11 C 0.354 3.646 12 N -0.470 5.470 13 C 0.061 3.939 14 C -0.107 4.107 15 C 0.045 3.955 16 C -0.509 4.509 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.112 4.112 25 C 0.070 3.930 26 N -0.528 5.528 27 C 0.170 3.830 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.402 0.598 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 6.165 20.750 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.379 5.379 6 C 0.362 3.638 7 O -0.423 6.423 8 C -0.250 4.250 9 C -0.019 4.019 10 C -0.224 4.224 11 C 0.121 3.879 12 N -0.185 5.185 13 C -0.063 4.063 14 C -0.146 4.146 15 C 0.027 3.973 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.150 4.150 25 C -0.056 4.056 26 N -0.243 5.243 27 C 0.009 3.991 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.838 5.643 20.638 24.952 hybrid contribution 0.015 0.434 -0.588 0.731 sum -12.823 6.077 20.050 24.564 Atomic orbital electron populations 1.22780 0.80587 1.03141 1.00100 1.87948 1.20058 1.27320 1.95454 1.22840 0.93090 0.85569 1.01545 1.21369 0.91815 0.99318 0.87508 1.45792 1.07575 1.63751 1.20770 1.18001 0.81948 0.77737 0.86131 1.90764 1.52903 1.52132 1.46542 1.20571 0.95618 1.11196 0.97639 1.21189 0.94773 0.90635 0.95308 1.21349 1.01038 1.05137 0.94864 1.20380 0.88437 0.85992 0.93111 1.58844 1.16047 1.39760 1.03808 1.22567 0.92934 0.94166 0.96604 1.21782 1.01414 0.99583 0.91780 1.18733 0.91024 0.95097 0.92480 1.21219 1.23996 1.01472 1.08066 0.92543 1.24977 0.96340 0.94925 0.97824 1.69856 1.31131 1.14818 1.37367 0.86553 0.78499 0.80295 0.82757 1.19808 1.21124 1.21061 1.21796 1.00015 0.99220 0.93986 1.22101 0.89383 1.00019 0.94111 1.67802 1.17602 1.17479 1.21424 1.22672 0.98865 0.90124 0.87433 0.93824 0.89363 0.93972 0.91440 0.92322 0.90427 0.89745 0.76191 0.83853 0.83883 0.94012 0.91317 0.93316 0.88066 0.95776 0.93052 0.92389 0.92401 0.90934 0.93652 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.89 10.65 -35.23 -0.38 -3.26 16 3 C 0.05 0.25 6.07 37.16 0.23 0.48 16 4 C 0.12 0.93 6.06 -4.04 -0.02 0.91 16 5 N -0.73 -6.62 5.46 -61.34 -0.33 -6.96 16 6 C 0.57 7.13 7.77 -12.47 -0.10 7.03 16 7 O -0.55 -8.42 16.41 5.28 0.09 -8.33 16 8 C -0.24 -3.08 5.89 -104.82 -0.62 -3.70 16 9 C 0.01 0.09 9.65 -39.29 -0.38 -0.29 16 10 C -0.20 -2.83 9.11 -39.65 -0.36 -3.19 16 11 C 0.35 5.71 6.40 -155.28 -0.99 4.72 16 12 N -0.47 -8.39 4.66 -173.26 -0.81 -9.20 16 13 C 0.06 1.14 5.24 -3.83 -0.02 1.12 16 14 C -0.11 -2.39 5.12 -26.65 -0.14 -2.53 16 15 C 0.05 1.08 2.16 -91.65 -0.20 0.88 16 16 C -0.51 -13.56 8.56 -34.44 -0.29 -13.86 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 19 N -0.89 -24.66 11.37 55.43 0.63 -24.02 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 25 C 0.07 1.28 4.64 -3.83 -0.02 1.26 16 26 N -0.53 -8.07 8.64 -12.14 -0.10 -8.17 16 27 C 0.17 2.09 10.71 -17.13 -0.18 1.91 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.95 6.52 -40.82 -0.27 2.68 16 36 H 0.14 1.71 7.73 -52.48 -0.41 1.31 16 37 H 0.14 1.83 7.12 -52.49 -0.37 1.46 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.12 6.64 -51.93 -0.34 0.78 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.10 2.51 6.18 -51.92 -0.32 2.19 16 42 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 47 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 48 H 0.15 1.33 6.41 -52.49 -0.34 0.99 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -31.24 387.21 -9.80 -41.04 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.48 Total: 2.12 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.22 Total: -4.91 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.62 Total: -48.35 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.29 Total: -11.59 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.24 -9.80 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567419901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.060 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds