Wall clock time and date at job start Tue Mar 31 2020 17:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99688 * 2 1 4 4 C 1.53004 * 109.46927 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47198 * 64.99809 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21593 * 120.00264 * 359.72086 * 6 5 4 8 8 C 1.47541 * 119.99728 * 179.72391 * 6 5 4 9 9 C 1.40346 * 120.47745 * 179.97438 * 8 6 5 10 10 C 1.36854 * 118.49827 * 179.97438 * 9 8 6 11 11 C 1.39395 * 119.37601 * 359.97438 * 10 9 8 12 12 N 1.38454 * 119.54075 * 180.02562 * 11 10 9 13 13 C 1.46847 * 110.99974 * 304.21447 * 12 11 10 14 14 C 1.53045 * 109.52199 * 174.15764 * 13 12 11 15 15 C 1.53113 * 109.27719 * 59.18107 * 14 13 12 16 16 C 1.50704 * 109.52391 * 182.43974 * 15 14 13 17 17 H 1.07998 * 120.00247 * 119.67830 * 16 15 14 18 18 C 1.37882 * 119.99471 * 299.68373 * 16 15 14 19 19 N 1.31513 * 120.00596 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99487 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46943 * 119.99929 * 20 18 16 23 23 H 1.48494 * 109.47221 * 239.99719 * 20 18 16 24 24 C 1.53119 * 109.16110 * 302.34224 * 15 14 13 25 25 C 1.46850 * 111.00178 * 180.02562 * 12 11 10 26 26 N 1.32608 * 120.92101 * 0.02562 * 11 10 9 27 27 C 1.31672 * 121.63709 * 359.72266 * 26 11 10 28 28 H 1.08999 * 109.47565 * 60.00461 * 1 2 3 29 29 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47845 * 300.00480 * 1 2 3 31 31 H 1.09000 * 109.47229 * 59.99775 * 3 2 1 32 32 H 1.08998 * 109.47164 * 299.99298 * 3 2 1 33 33 H 1.09009 * 109.46730 * 304.99597 * 4 3 2 34 34 H 1.08998 * 109.46846 * 185.00141 * 4 3 2 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 36 36 H 1.08008 * 120.75075 * 359.95364 * 9 8 6 37 37 H 1.07994 * 120.31145 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.46709 * 294.17457 * 13 12 11 39 39 H 1.09000 * 109.46272 * 54.14156 * 13 12 11 40 40 H 1.08996 * 109.50347 * 299.23963 * 14 13 12 41 41 H 1.09008 * 109.49804 * 179.12226 * 14 13 12 42 42 H 1.09005 * 109.52715 * 62.24937 * 15 14 13 43 43 H 0.96991 * 120.00322 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.50520 * 297.71768 * 24 15 14 45 45 H 1.08998 * 109.50270 * 177.59786 * 24 15 14 46 46 H 1.08995 * 109.46512 * 305.85627 * 25 12 11 47 47 H 1.09000 * 109.45997 * 65.82684 * 25 12 11 48 48 H 1.08001 * 119.73675 * 180.28828 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 5.2891 0.3505 -1.4710 7 8 6.1072 0.6777 -0.6331 8 6 5.7330 -0.2802 -2.7287 9 6 7.0971 -0.5067 -2.9687 10 6 7.4637 -1.0949 -4.1488 11 6 6.4800 -1.4496 -5.0705 12 7 6.8470 -2.0453 -6.2652 13 6 7.8122 -1.2124 -6.9940 14 6 8.3042 -1.9646 -8.2326 15 6 7.1091 -2.2973 -9.1300 16 6 7.5795 -3.0904 -10.3220 17 1 7.1956 -4.0849 -10.4946 18 6 8.5003 -2.5461 -11.1921 19 7 8.9675 -1.3349 -10.9822 20 14 9.0840 -3.5294 -12.6693 21 1 8.4112 -4.8532 -12.6799 22 1 8.7500 -2.7950 -13.9160 23 1 10.5541 -3.7213 -12.5865 24 6 6.0967 -3.1242 -8.3325 25 6 5.6686 -2.3379 -7.0912 26 7 5.1976 -1.2244 -4.8191 27 6 4.8020 -0.6655 -3.6944 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 1.6884 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5686 0.8428 34 1 3.9783 2.1766 0.0902 35 1 3.3239 0.3027 -1.9191 36 1 7.8408 -0.2230 -2.2386 37 1 8.5052 -1.2825 -4.3638 38 1 7.3317 -0.2833 -7.3004 39 1 8.6590 -0.9865 -6.3460 40 1 8.7971 -2.8872 -7.9262 41 1 9.0089 -1.3399 -8.7817 42 1 6.6392 -1.3737 -9.4682 43 1 9.6155 -0.9522 -11.5942 44 1 6.5548 -4.0650 -8.0276 45 1 5.2240 -3.3280 -8.9530 46 1 4.9582 -2.9297 -6.5140 47 1 5.1985 -1.4033 -7.3972 48 1 3.7491 -0.5005 -3.5195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567419901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:49 Heat of formation + Delta-G solvation = -60.395367 kcal Electronic energy + Delta-G solvation = -27966.715138 eV Core-core repulsion = 24020.787038 eV Total energy + Delta-G solvation = -3945.928101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00215 -40.69155 -39.21902 -38.76233 -35.93619 -35.81435 -33.72978 -33.57876 -31.75557 -31.53326 -30.08397 -27.81340 -27.09979 -25.29956 -25.11035 -23.76987 -23.33688 -22.83661 -21.69531 -20.48457 -19.24374 -18.52321 -18.14327 -17.97164 -17.56908 -17.01614 -16.55288 -16.26052 -16.20346 -16.04771 -15.88354 -15.53008 -15.20736 -14.96596 -14.87088 -14.45952 -14.34711 -14.15724 -13.96326 -13.81229 -13.65766 -13.11289 -13.08515 -12.91048 -12.79739 -12.65643 -12.31910 -12.13536 -12.11245 -11.96963 -11.52201 -11.37141 -11.02894 -10.99177 -10.85651 -10.66446 -10.63535 -10.44190 -10.39374 -10.17671 -9.12075 -8.08204 -6.20414 -0.38928 0.26936 1.41245 1.44112 1.54668 1.74977 2.10472 2.44521 2.49142 2.81883 2.86254 3.19537 3.31352 3.71866 3.82402 3.91271 3.93620 4.06623 4.17192 4.20201 4.22344 4.33922 4.44148 4.46030 4.56779 4.60799 4.62254 4.65362 4.66123 4.75032 4.82123 4.86894 4.93706 4.95888 5.03274 5.06508 5.16747 5.24316 5.33698 5.39393 5.52115 5.61419 5.72979 5.98413 6.12498 6.20568 6.20698 6.39782 6.44222 6.86270 6.90435 7.13004 7.47426 8.96916 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.002020 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.602484 B =13858.868991 C =14639.762451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.051 3.949 4 C 0.120 3.880 5 N -0.711 5.711 6 C 0.573 3.427 7 O -0.579 6.579 8 C -0.237 4.237 9 C 0.006 3.994 10 C -0.199 4.199 11 C 0.332 3.668 12 N -0.478 5.478 13 C 0.074 3.926 14 C -0.097 4.097 15 C 0.042 3.958 16 C -0.530 4.530 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.103 4.103 25 C 0.083 3.917 26 N -0.543 5.543 27 C 0.173 3.827 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.031 0.969 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.073 0.927 42 H -0.007 1.007 43 H 0.261 0.739 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.037 0.963 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 6.372 22.167 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.026 4.026 4 C -0.003 4.003 5 N -0.363 5.363 6 C 0.361 3.639 7 O -0.460 6.460 8 C -0.244 4.244 9 C -0.020 4.020 10 C -0.222 4.222 11 C 0.100 3.900 12 N -0.193 5.193 13 C -0.050 4.050 14 C -0.135 4.135 15 C 0.023 3.977 16 C -0.568 4.568 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.141 4.141 25 C -0.043 4.043 26 N -0.258 5.258 27 C 0.013 3.987 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.250 0.750 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.011 0.989 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.055 0.945 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.242 5.851 22.074 26.913 hybrid contribution 0.337 0.439 -0.910 1.066 sum -13.905 6.291 21.163 26.092 Atomic orbital electron populations 1.22906 0.79346 1.03642 1.01110 1.87901 1.21505 1.28420 1.95700 1.22870 0.91251 0.85253 1.03216 1.21515 0.93587 0.99122 0.86120 1.45757 1.06634 1.62444 1.21466 1.17973 0.82733 0.77612 0.85593 1.90754 1.54003 1.53760 1.47472 1.20749 0.95681 1.10230 0.97779 1.21373 0.95449 0.90094 0.95104 1.21432 1.01238 1.04823 0.94695 1.20377 0.89420 0.87597 0.92629 1.58811 1.15685 1.40619 1.04180 1.22309 0.94007 0.93104 0.95619 1.21501 1.00111 0.98960 0.92963 1.18701 0.92324 0.93931 0.92717 1.21565 1.24254 1.01584 1.09378 0.93012 1.25704 0.96549 0.95880 1.00378 1.69983 1.31459 1.15963 1.38182 0.85598 0.78003 0.79047 0.79543 1.19335 1.20845 1.20654 1.21646 0.99088 0.98669 0.94724 1.21897 0.89810 0.99354 0.93279 1.67770 1.17312 1.17950 1.22718 1.23155 1.00432 0.88877 0.86260 0.92832 0.89237 0.92929 0.89566 0.90787 0.91779 0.89086 0.74979 0.82809 0.82860 0.95064 0.88932 0.94177 0.90865 0.98887 0.93023 0.92766 0.92065 0.89603 0.94454 0.79566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -5.23 10.65 -148.98 -1.59 -6.81 16 3 C 0.05 0.42 6.07 71.98 0.44 0.85 16 4 C 0.12 1.57 6.06 86.38 0.52 2.09 16 5 N -0.71 -11.31 5.46 -466.25 -2.54 -13.85 16 6 C 0.57 13.17 7.77 86.70 0.67 13.84 16 7 O -0.58 -17.17 16.41 -4.01 -0.07 -17.24 16 8 C -0.24 -5.53 5.89 -19.99 -0.12 -5.65 16 9 C 0.01 0.14 9.65 22.46 0.22 0.36 16 10 C -0.20 -5.30 9.11 22.22 0.20 -5.10 16 11 C 0.33 10.28 6.40 133.25 0.85 11.13 16 12 N -0.48 -16.76 4.66 -702.07 -3.28 -20.04 16 13 C 0.07 2.76 5.24 86.33 0.45 3.21 16 14 C -0.10 -4.43 5.12 30.65 0.16 -4.28 16 15 C 0.04 2.06 2.16 -11.46 -0.02 2.03 16 16 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 17 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 18 C 0.01 0.73 5.31 84.66 0.45 1.18 16 19 N -0.92 -51.78 11.37 21.45 0.24 -51.54 16 20 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C -0.10 -4.26 5.32 30.65 0.16 -4.10 16 25 C 0.08 2.99 4.64 86.33 0.40 3.39 16 26 N -0.54 -15.60 8.64 -192.33 -1.66 -17.26 16 27 C 0.17 3.83 10.71 85.04 0.91 4.74 16 28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.41 4.80 6.52 -92.71 -0.60 4.20 16 36 H 0.15 3.43 7.73 -2.91 -0.02 3.41 16 37 H 0.15 3.68 7.12 -2.91 -0.02 3.66 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 2.96 6.64 -2.39 -0.02 2.94 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 3.76 6.18 -2.38 -0.01 3.75 16 42 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 43 H 0.26 14.02 8.31 -92.72 -0.77 13.25 16 44 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.09 2.86 7.69 -2.39 -0.02 2.85 16 47 H 0.04 1.39 8.11 -2.39 -0.02 1.37 16 48 H 0.19 2.63 6.41 -2.91 -0.02 2.61 16 Total: -1.00 -68.12 387.21 0.26 -67.86 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.36 Total: 17.06 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 6.76 Total: -3.46 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -7.24 Total: -102.69 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.65 Total: -24.05 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.12 0.26 -67.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567419901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.463 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds