Wall clock time and date at job start Tue Mar 31 2020 17:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 116.99708 * 2 1 4 4 N 1.32277 * 119.68625 * 359.97438 * 3 2 1 5 5 C 1.31927 * 121.64802 * 179.97438 * 4 3 2 6 6 C 1.38094 * 120.83158 * 0.02562 * 5 4 3 7 7 C 1.38784 * 119.29187 * 359.97438 * 6 5 4 8 8 C 1.38427 * 118.48046 * 359.74578 * 7 6 5 9 9 C 1.50697 * 120.44284 * 180.24756 * 8 7 6 10 10 N 1.46505 * 109.47134 * 260.25497 * 9 8 7 11 11 C 1.34777 * 120.00038 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99947 * 355.01987 * 11 10 9 13 13 N 1.34776 * 120.00115 * 175.01068 * 11 10 9 14 14 C 1.46926 * 120.62518 * 4.94996 * 13 11 10 15 15 C 1.53626 * 108.54059 * 126.36707 * 14 13 11 16 16 C 1.53043 * 109.24350 * 54.85498 * 15 14 13 17 17 C 1.52995 * 109.46170 * 178.48792 * 16 15 14 18 18 C 1.50697 * 109.47256 * 295.06796 * 17 16 15 19 19 H 1.07999 * 120.00276 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99827 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99975 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99682 * 179.97438 * 20 18 17 23 23 H 1.48488 * 109.47504 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46797 * 120.00437 * 22 20 18 25 25 H 1.48507 * 109.47032 * 239.99955 * 22 20 18 26 26 C 1.53045 * 109.53579 * 298.51266 * 16 15 14 27 27 C 1.46925 * 120.63241 * 185.22881 * 13 11 10 28 28 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47902 * 300.00345 * 1 2 3 30 30 H 1.09008 * 109.46604 * 60.00403 * 1 2 3 31 31 H 1.07999 * 119.58642 * 179.97438 * 5 4 3 32 32 H 1.08005 * 120.35381 * 180.02562 * 6 5 4 33 33 H 1.07996 * 120.75782 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46935 * 20.25378 * 9 8 7 35 35 H 1.08999 * 109.47454 * 140.25309 * 9 8 7 36 36 H 0.96993 * 119.99730 * 0.02562 * 10 9 8 37 37 H 1.09004 * 109.58490 * 246.19429 * 14 13 11 38 38 H 1.08998 * 109.59242 * 6.62195 * 14 13 11 39 39 H 1.08995 * 109.63454 * 294.86006 * 15 14 13 40 40 H 1.09007 * 109.43135 * 174.71937 * 15 14 13 41 41 H 1.09005 * 109.44934 * 58.51855 * 16 15 14 42 42 H 1.09000 * 109.46940 * 55.06761 * 17 16 15 43 43 H 1.09005 * 109.47068 * 175.06163 * 17 16 15 44 44 H 0.96998 * 119.99532 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.49360 * 301.41403 * 26 16 15 46 46 H 1.08998 * 109.51967 * 181.33234 * 26 16 15 47 47 H 1.09005 * 109.58388 * 353.37069 * 27 13 11 48 48 H 1.08996 * 109.58673 * 113.65949 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8766 3.5097 0.0000 6 6 3.2505 3.6491 0.0005 7 6 4.0483 2.5135 0.0011 8 6 3.4321 1.2739 0.0065 9 6 4.2557 0.0119 0.0129 10 7 4.3276 -0.5312 -1.3458 11 6 5.0174 -1.6646 -1.5829 12 8 5.6545 -2.1868 -0.6886 13 7 5.0009 -2.2191 -2.8112 14 6 4.3259 -1.5442 -3.9281 15 6 5.3209 -1.4096 -5.0907 16 6 5.8812 -2.7909 -5.4377 17 6 6.8445 -2.6680 -6.6199 18 6 6.0842 -2.2257 -7.8435 19 1 5.0202 -2.0501 -7.7841 20 6 6.7469 -2.0450 -9.0390 21 7 8.0425 -2.2593 -9.1116 22 14 5.8043 -1.4974 -10.5559 23 1 4.3698 -1.3265 -10.2125 24 1 6.3540 -0.2059 -11.0408 25 1 5.9400 -2.5239 -11.6205 26 6 6.6278 -3.3588 -4.2284 27 6 5.6524 -3.5128 -3.0573 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.2514 4.3902 -0.0009 32 1 3.6994 4.6315 0.0013 33 1 5.1252 2.5950 0.0019 34 1 5.2614 0.2362 0.3683 35 1 3.7921 -0.7211 0.6731 36 1 3.8795 -0.0747 -2.0749 37 1 3.4662 -2.1343 -4.2457 38 1 3.9956 -0.5548 -3.6115 39 1 6.1371 -0.7485 -4.7996 40 1 4.8093 -0.9958 -5.9598 41 1 5.0618 -3.4583 -5.7047 42 1 7.6151 -1.9336 -6.3858 43 1 7.3101 -3.6348 -6.8112 44 1 8.5086 -2.1325 -9.9527 45 1 7.4318 -2.6793 -3.9453 46 1 7.0469 -4.3321 -4.4833 47 1 6.1978 -3.8227 -2.1658 48 1 4.8985 -4.2607 -3.3029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567746309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:13 Heat of formation + Delta-G solvation = -36.286577 kcal Electronic energy + Delta-G solvation = -28636.892447 eV Core-core repulsion = 24692.009782 eV Total energy + Delta-G solvation = -3944.882665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.15116 -40.09228 -38.21581 -37.47719 -35.32776 -33.98051 -32.79438 -32.02823 -31.25506 -30.46745 -28.11942 -27.64010 -26.49649 -24.43547 -23.36582 -22.90520 -22.49155 -21.69857 -20.02450 -19.24370 -18.70871 -17.94235 -17.46198 -16.51282 -16.28357 -16.05826 -15.77464 -15.42065 -14.76841 -14.56403 -14.52764 -14.36125 -13.98503 -13.72641 -13.58013 -13.48015 -13.37392 -13.10511 -12.76568 -12.57748 -12.35907 -12.15969 -11.86497 -11.77077 -11.55999 -11.18439 -10.95108 -10.82194 -10.68635 -10.47584 -10.31425 -10.08220 -10.04302 -9.90222 -9.62103 -9.25494 -9.08079 -8.94355 -8.84898 -8.36180 -8.17999 -6.00429 -4.02330 0.62819 0.89042 2.74499 2.83006 3.29095 3.37132 3.37746 3.39489 3.39939 3.87691 4.07679 4.41626 4.43665 4.44512 4.58044 4.85016 4.96981 5.00742 5.07558 5.13896 5.29199 5.33040 5.34730 5.39573 5.51406 5.56427 5.61985 5.67435 5.71803 5.78790 5.85299 6.01992 6.04151 6.14421 6.38565 6.43861 6.48075 6.53721 6.69058 6.85880 6.99029 7.01840 7.12477 7.14612 7.43236 7.67602 7.82440 7.99895 8.08320 8.42207 8.74862 9.04594 9.61463 11.10879 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002586 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.513653 B =10825.257975 C =11760.558644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.299 6.299 3 C 0.336 3.664 4 N -0.542 5.542 5 C 0.145 3.855 6 C -0.213 4.213 7 C -0.021 4.021 8 C -0.179 4.179 9 C 0.196 3.804 10 N -0.743 5.743 11 C 0.710 3.290 12 O -0.599 6.599 13 N -0.622 5.622 14 C 0.111 3.889 15 C -0.118 4.118 16 C -0.079 4.079 17 C 0.027 3.973 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.130 4.130 27 C 0.130 3.870 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 9.909 20.075 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.205 6.205 3 C 0.157 3.843 4 N -0.266 5.266 5 C -0.011 4.011 6 C -0.233 4.233 7 C -0.047 4.047 8 C -0.182 4.182 9 C 0.071 3.929 10 N -0.402 5.402 11 C 0.411 3.589 12 O -0.478 6.478 13 N -0.359 5.359 14 C -0.012 4.012 15 C -0.156 4.156 16 C -0.098 4.098 17 C -0.010 4.010 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.168 4.168 27 C 0.008 3.992 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.178 0.822 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.572 9.137 20.623 26.325 hybrid contribution -0.071 0.922 -1.421 1.695 sum -13.642 10.059 19.202 25.613 Atomic orbital electron populations 1.22894 0.77071 1.03192 1.02394 1.86331 1.22941 1.24052 1.87131 1.19726 0.88805 0.84936 0.90850 1.67389 1.40771 0.98811 1.19616 1.22484 0.93029 0.93670 0.91913 1.22025 0.94868 0.99940 1.06477 1.21481 1.01017 0.90561 0.91663 1.19965 0.91291 0.96682 1.10270 1.19698 0.98524 0.90746 0.83900 1.45259 1.57501 1.27154 1.10252 1.15774 0.79808 0.80354 0.82936 1.90876 1.47675 1.64859 1.44402 1.47321 1.58133 1.23009 1.07418 1.21865 0.95900 0.95889 0.87576 1.21972 0.98145 0.99068 0.96394 1.21172 0.98836 0.94620 0.95176 1.19129 0.93880 0.97114 0.90867 1.21280 0.94615 1.45136 0.94315 0.92573 1.25029 0.94821 0.95740 0.98931 1.69977 1.07815 1.49644 1.26029 0.86598 0.80121 0.78282 0.83355 1.19776 1.21123 1.21089 1.22039 0.98026 1.01679 0.95061 1.21538 0.95543 0.82748 0.99414 0.88478 0.92315 0.92177 0.82228 0.84206 0.83717 0.90658 0.90466 0.76837 0.91596 0.91749 0.92300 0.89885 0.92377 0.96662 0.96564 0.93112 0.92080 0.91160 0.89573 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.19 9.73 -18.75 -0.18 -3.37 16 3 C 0.34 3.52 7.47 -17.12 -0.13 3.39 16 4 N -0.54 -5.29 9.22 -13.33 -0.12 -5.41 16 5 C 0.14 1.06 11.18 -17.56 -0.20 0.86 16 6 C -0.21 -1.38 10.11 -39.43 -0.40 -1.78 16 7 C -0.02 -0.16 9.81 -39.31 -0.39 -0.55 16 8 C -0.18 -1.73 5.28 -104.32 -0.55 -2.28 16 9 C 0.20 2.20 5.49 -5.19 -0.03 2.17 16 10 N -0.74 -9.46 5.46 -66.41 -0.36 -9.83 16 11 C 0.71 11.38 8.30 -86.92 -0.72 10.66 16 12 O -0.60 -11.48 15.77 5.29 0.08 -11.40 16 13 N -0.62 -9.59 2.97 -178.23 -0.53 -10.12 16 14 C 0.11 1.56 6.42 -3.48 -0.02 1.54 16 15 C -0.12 -2.04 5.21 -26.38 -0.14 -2.18 16 16 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 17 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16 18 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 19 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.13 -2.23 5.36 -26.61 -0.14 -2.38 16 27 C 0.13 2.03 6.44 -3.71 -0.02 2.00 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16 31 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 36 H 0.40 4.56 5.95 -40.82 -0.24 4.31 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.77 5.64 -51.93 -0.29 0.48 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -33.63 389.53 -9.42 -43.04 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.50 Total: 2.01 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.39 Total: -1.12 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.28 Total: -51.22 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.10 Total: -14.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.63 -9.42 -43.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567746309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.756 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds