Wall clock time and date at job start Tue Mar 31 2020 17:29:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35683 * 116.99708 * 2 1
4 4 N 1.32277 * 119.68625 * 359.97438 * 3 2 1
5 5 C 1.31927 * 121.64802 * 179.97438 * 4 3 2
6 6 C 1.38094 * 120.83158 * 0.02562 * 5 4 3
7 7 C 1.38784 * 119.29187 * 359.97438 * 6 5 4
8 8 C 1.38427 * 118.48046 * 359.74578 * 7 6 5
9 9 C 1.50697 * 120.44284 * 180.24756 * 8 7 6
10 10 N 1.46505 * 109.47134 * 260.25497 * 9 8 7
11 11 C 1.34777 * 120.00038 * 179.97438 * 10 9 8
12 12 O 1.21590 * 119.99947 * 355.01987 * 11 10 9
13 13 N 1.34776 * 120.00115 * 175.01068 * 11 10 9
14 14 C 1.46926 * 120.62518 * 4.94996 * 13 11 10
15 15 C 1.53626 * 108.54059 * 126.36707 * 14 13 11
16 16 C 1.53043 * 109.24350 * 54.85498 * 15 14 13
17 17 C 1.52995 * 109.46170 * 178.48792 * 16 15 14
18 18 C 1.50697 * 109.47256 * 295.06796 * 17 16 15
19 19 H 1.07999 * 120.00276 * 359.97438 * 18 17 16
20 20 C 1.37879 * 119.99827 * 179.97438 * 18 17 16
21 21 N 1.31517 * 119.99975 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 119.99682 * 179.97438 * 20 18 17
23 23 H 1.48488 * 109.47504 * 0.02562 * 22 20 18
24 24 H 1.48504 * 109.46797 * 120.00437 * 22 20 18
25 25 H 1.48507 * 109.47032 * 239.99955 * 22 20 18
26 26 C 1.53045 * 109.53579 * 298.51266 * 16 15 14
27 27 C 1.46925 * 120.63241 * 185.22881 * 13 11 10
28 28 H 1.09003 * 109.47107 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47902 * 300.00345 * 1 2 3
30 30 H 1.09008 * 109.46604 * 60.00403 * 1 2 3
31 31 H 1.07999 * 119.58642 * 179.97438 * 5 4 3
32 32 H 1.08005 * 120.35381 * 180.02562 * 6 5 4
33 33 H 1.07996 * 120.75782 * 180.02562 * 7 6 5
34 34 H 1.09003 * 109.46935 * 20.25378 * 9 8 7
35 35 H 1.08999 * 109.47454 * 140.25309 * 9 8 7
36 36 H 0.96993 * 119.99730 * 0.02562 * 10 9 8
37 37 H 1.09004 * 109.58490 * 246.19429 * 14 13 11
38 38 H 1.08998 * 109.59242 * 6.62195 * 14 13 11
39 39 H 1.08995 * 109.63454 * 294.86006 * 15 14 13
40 40 H 1.09007 * 109.43135 * 174.71937 * 15 14 13
41 41 H 1.09005 * 109.44934 * 58.51855 * 16 15 14
42 42 H 1.09000 * 109.46940 * 55.06761 * 17 16 15
43 43 H 1.09005 * 109.47068 * 175.06163 * 17 16 15
44 44 H 0.96998 * 119.99532 * 179.97438 * 21 20 18
45 45 H 1.09006 * 109.49360 * 301.41403 * 26 16 15
46 46 H 1.08998 * 109.51967 * 181.33234 * 26 16 15
47 47 H 1.09005 * 109.58388 * 353.37069 * 27 13 11
48 48 H 1.08996 * 109.58673 * 113.65949 * 27 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2090 0.0000
4 7 1.3184 2.3143 -0.0005
5 6 1.8766 3.5097 0.0000
6 6 3.2505 3.6491 0.0005
7 6 4.0483 2.5135 0.0011
8 6 3.4321 1.2739 0.0065
9 6 4.2557 0.0119 0.0129
10 7 4.3276 -0.5312 -1.3458
11 6 5.0174 -1.6646 -1.5829
12 8 5.6545 -2.1868 -0.6886
13 7 5.0009 -2.2191 -2.8112
14 6 4.3259 -1.5442 -3.9281
15 6 5.3209 -1.4096 -5.0907
16 6 5.8812 -2.7909 -5.4377
17 6 6.8445 -2.6680 -6.6199
18 6 6.0842 -2.2257 -7.8435
19 1 5.0202 -2.0501 -7.7841
20 6 6.7469 -2.0450 -9.0390
21 7 8.0425 -2.2593 -9.1116
22 14 5.8043 -1.4974 -10.5559
23 1 4.3698 -1.3265 -10.2125
24 1 6.3540 -0.2059 -11.0408
25 1 5.9400 -2.5239 -11.6205
26 6 6.6278 -3.3588 -4.2284
27 6 5.6524 -3.5128 -3.0573
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3635 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 1.2514 4.3902 -0.0009
32 1 3.6994 4.6315 0.0013
33 1 5.1252 2.5950 0.0019
34 1 5.2614 0.2362 0.3683
35 1 3.7921 -0.7211 0.6731
36 1 3.8795 -0.0747 -2.0749
37 1 3.4662 -2.1343 -4.2457
38 1 3.9956 -0.5548 -3.6115
39 1 6.1371 -0.7485 -4.7996
40 1 4.8093 -0.9958 -5.9598
41 1 5.0618 -3.4583 -5.7047
42 1 7.6151 -1.9336 -6.3858
43 1 7.3101 -3.6348 -6.8112
44 1 8.5086 -2.1325 -9.9527
45 1 7.4318 -2.6793 -3.9453
46 1 7.0469 -4.3321 -4.4833
47 1 6.1978 -3.8227 -2.1658
48 1 4.8985 -4.2607 -3.3029
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000567746309.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:29:13
Heat of formation + Delta-G solvation = -36.286577 kcal
Electronic energy + Delta-G solvation = -28636.892447 eV
Core-core repulsion = 24692.009782 eV
Total energy + Delta-G solvation = -3944.882665 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.15116 -40.09228 -38.21581 -37.47719 -35.32776 -33.98051 -32.79438 -32.02823
-31.25506 -30.46745 -28.11942 -27.64010 -26.49649 -24.43547 -23.36582 -22.90520
-22.49155 -21.69857 -20.02450 -19.24370 -18.70871 -17.94235 -17.46198 -16.51282
-16.28357 -16.05826 -15.77464 -15.42065 -14.76841 -14.56403 -14.52764 -14.36125
-13.98503 -13.72641 -13.58013 -13.48015 -13.37392 -13.10511 -12.76568 -12.57748
-12.35907 -12.15969 -11.86497 -11.77077 -11.55999 -11.18439 -10.95108 -10.82194
-10.68635 -10.47584 -10.31425 -10.08220 -10.04302 -9.90222 -9.62103 -9.25494
-9.08079 -8.94355 -8.84898 -8.36180 -8.17999 -6.00429 -4.02330 0.62819
0.89042 2.74499 2.83006 3.29095 3.37132 3.37746 3.39489 3.39939
3.87691 4.07679 4.41626 4.43665 4.44512 4.58044 4.85016 4.96981
5.00742 5.07558 5.13896 5.29199 5.33040 5.34730 5.39573 5.51406
5.56427 5.61985 5.67435 5.71803 5.78790 5.85299 6.01992 6.04151
6.14421 6.38565 6.43861 6.48075 6.53721 6.69058 6.85880 6.99029
7.01840 7.12477 7.14612 7.43236 7.67602 7.82440 7.99895 8.08320
8.42207 8.74862 9.04594 9.61463 11.10879
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.013133 B = 0.002586 C = 0.002380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2131.513653 B =10825.257975 C =11760.558644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 O -0.299 6.299
3 C 0.336 3.664
4 N -0.542 5.542
5 C 0.145 3.855
6 C -0.213 4.213
7 C -0.021 4.021
8 C -0.179 4.179
9 C 0.196 3.804
10 N -0.743 5.743
11 C 0.710 3.290
12 O -0.599 6.599
13 N -0.622 5.622
14 C 0.111 3.889
15 C -0.118 4.118
16 C -0.079 4.079
17 C 0.027 3.973
18 C -0.515 4.515
19 H 0.056 0.944
20 C 0.056 3.944
21 N -0.895 5.895
22 Si 0.888 3.112
23 H -0.273 1.273
24 H -0.285 1.285
25 H -0.285 1.285
26 C -0.130 4.130
27 C 0.130 3.870
28 H 0.097 0.903
29 H 0.058 0.942
30 H 0.059 0.941
31 H 0.161 0.839
32 H 0.140 0.860
33 H 0.145 0.855
34 H 0.075 0.925
35 H 0.077 0.923
36 H 0.395 0.605
37 H 0.066 0.934
38 H 0.064 0.936
39 H 0.058 0.942
40 H 0.083 0.917
41 H 0.058 0.942
42 H 0.015 0.985
43 H 0.016 0.984
44 H 0.259 0.741
45 H 0.060 0.940
46 H 0.070 0.930
47 H 0.086 0.914
48 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.354 9.909 20.075 26.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.205 6.205
3 C 0.157 3.843
4 N -0.266 5.266
5 C -0.011 4.011
6 C -0.233 4.233
7 C -0.047 4.047
8 C -0.182 4.182
9 C 0.071 3.929
10 N -0.402 5.402
11 C 0.411 3.589
12 O -0.478 6.478
13 N -0.359 5.359
14 C -0.012 4.012
15 C -0.156 4.156
16 C -0.098 4.098
17 C -0.010 4.010
18 C -0.553 4.553
19 H 0.074 0.926
20 C -0.145 4.145
21 N -0.535 5.535
22 Si 0.716 3.284
23 H -0.198 1.198
24 H -0.211 1.211
25 H -0.211 1.211
26 C -0.168 4.168
27 C 0.008 3.992
28 H 0.115 0.885
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.178 0.822
32 H 0.158 0.842
33 H 0.163 0.837
34 H 0.093 0.907
35 H 0.095 0.905
36 H 0.232 0.768
37 H 0.084 0.916
38 H 0.083 0.917
39 H 0.077 0.923
40 H 0.101 0.899
41 H 0.076 0.924
42 H 0.033 0.967
43 H 0.034 0.966
44 H 0.069 0.931
45 H 0.079 0.921
46 H 0.088 0.912
47 H 0.104 0.896
48 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -13.572 9.137 20.623 26.325
hybrid contribution -0.071 0.922 -1.421 1.695
sum -13.642 10.059 19.202 25.613
Atomic orbital electron populations
1.22894 0.77071 1.03192 1.02394 1.86331 1.22941 1.24052 1.87131
1.19726 0.88805 0.84936 0.90850 1.67389 1.40771 0.98811 1.19616
1.22484 0.93029 0.93670 0.91913 1.22025 0.94868 0.99940 1.06477
1.21481 1.01017 0.90561 0.91663 1.19965 0.91291 0.96682 1.10270
1.19698 0.98524 0.90746 0.83900 1.45259 1.57501 1.27154 1.10252
1.15774 0.79808 0.80354 0.82936 1.90876 1.47675 1.64859 1.44402
1.47321 1.58133 1.23009 1.07418 1.21865 0.95900 0.95889 0.87576
1.21972 0.98145 0.99068 0.96394 1.21172 0.98836 0.94620 0.95176
1.19129 0.93880 0.97114 0.90867 1.21280 0.94615 1.45136 0.94315
0.92573 1.25029 0.94821 0.95740 0.98931 1.69977 1.07815 1.49644
1.26029 0.86598 0.80121 0.78282 0.83355 1.19776 1.21123 1.21089
1.22039 0.98026 1.01679 0.95061 1.21538 0.95543 0.82748 0.99414
0.88478 0.92315 0.92177 0.82228 0.84206 0.83717 0.90658 0.90466
0.76837 0.91596 0.91749 0.92300 0.89885 0.92377 0.96662 0.96564
0.93112 0.92080 0.91160 0.89573 0.92111
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.31 10.38 101.05 1.05 1.36 16
2 O -0.30 -3.19 9.73 -18.75 -0.18 -3.37 16
3 C 0.34 3.52 7.47 -17.12 -0.13 3.39 16
4 N -0.54 -5.29 9.22 -13.33 -0.12 -5.41 16
5 C 0.14 1.06 11.18 -17.56 -0.20 0.86 16
6 C -0.21 -1.38 10.11 -39.43 -0.40 -1.78 16
7 C -0.02 -0.16 9.81 -39.31 -0.39 -0.55 16
8 C -0.18 -1.73 5.28 -104.32 -0.55 -2.28 16
9 C 0.20 2.20 5.49 -5.19 -0.03 2.17 16
10 N -0.74 -9.46 5.46 -66.41 -0.36 -9.83 16
11 C 0.71 11.38 8.30 -86.92 -0.72 10.66 16
12 O -0.60 -11.48 15.77 5.29 0.08 -11.40 16
13 N -0.62 -9.59 2.97 -178.23 -0.53 -10.12 16
14 C 0.11 1.56 6.42 -3.48 -0.02 1.54 16
15 C -0.12 -2.04 5.21 -26.38 -0.14 -2.18 16
16 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16
17 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16
18 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16
19 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16
20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16
21 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16
22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16
23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
26 C -0.13 -2.23 5.36 -26.61 -0.14 -2.38 16
27 C 0.13 2.03 6.44 -3.71 -0.02 2.00 16
28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16
30 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16
31 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16
32 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16
33 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16
34 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16
35 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16
36 H 0.40 4.56 5.95 -40.82 -0.24 4.31 16
37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.06 0.77 5.64 -51.93 -0.29 0.48 16
39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
40 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16
41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16
46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
47 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16
48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
LS Contribution 389.53 15.07 5.87 5.87
Total: -1.00 -33.63 389.53 -9.42 -43.04
By element:
Atomic # 1 Polarization: 9.51 SS G_CDS: -7.50 Total: 2.01 kcal
Atomic # 6 Polarization: 1.26 SS G_CDS: -2.39 Total: -1.12 kcal
Atomic # 7 Polarization: -50.94 SS G_CDS: -0.28 Total: -51.22 kcal
Atomic # 8 Polarization: -14.68 SS G_CDS: -0.10 Total: -14.77 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -33.63 -9.42 -43.04 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000567746309.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.756 kcal
(2) G-P(sol) polarization free energy of solvation -33.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.869 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds