Wall clock time and date at job start Tue Mar 31 2020 17:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 116.99708 * 2 1 4 4 N 1.32277 * 119.68625 * 359.97438 * 3 2 1 5 5 C 1.31927 * 121.64802 * 179.97438 * 4 3 2 6 6 C 1.38094 * 120.83158 * 0.02562 * 5 4 3 7 7 C 1.38784 * 119.29187 * 359.97438 * 6 5 4 8 8 C 1.38427 * 118.48046 * 359.74578 * 7 6 5 9 9 C 1.50697 * 120.44284 * 180.24756 * 8 7 6 10 10 N 1.46505 * 109.47134 * 260.25497 * 9 8 7 11 11 C 1.34777 * 120.00038 * 179.97438 * 10 9 8 12 12 O 1.21590 * 119.99947 * 355.01987 * 11 10 9 13 13 N 1.34776 * 120.00115 * 175.01068 * 11 10 9 14 14 C 1.46926 * 120.62518 * 4.94996 * 13 11 10 15 15 C 1.53626 * 108.54059 * 126.36707 * 14 13 11 16 16 C 1.53043 * 109.24350 * 54.85498 * 15 14 13 17 17 C 1.52995 * 109.46170 * 178.48792 * 16 15 14 18 18 C 1.50697 * 109.47256 * 295.06796 * 17 16 15 19 19 H 1.07999 * 120.00276 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99827 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99975 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99682 * 179.97438 * 20 18 17 23 23 H 1.48488 * 109.47504 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46797 * 120.00437 * 22 20 18 25 25 H 1.48507 * 109.47032 * 239.99955 * 22 20 18 26 26 C 1.53045 * 109.53579 * 298.51266 * 16 15 14 27 27 C 1.46925 * 120.63241 * 185.22881 * 13 11 10 28 28 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47902 * 300.00345 * 1 2 3 30 30 H 1.09008 * 109.46604 * 60.00403 * 1 2 3 31 31 H 1.07999 * 119.58642 * 179.97438 * 5 4 3 32 32 H 1.08005 * 120.35381 * 180.02562 * 6 5 4 33 33 H 1.07996 * 120.75782 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46935 * 20.25378 * 9 8 7 35 35 H 1.08999 * 109.47454 * 140.25309 * 9 8 7 36 36 H 0.96993 * 119.99730 * 0.02562 * 10 9 8 37 37 H 1.09004 * 109.58490 * 246.19429 * 14 13 11 38 38 H 1.08998 * 109.59242 * 6.62195 * 14 13 11 39 39 H 1.08995 * 109.63454 * 294.86006 * 15 14 13 40 40 H 1.09007 * 109.43135 * 174.71937 * 15 14 13 41 41 H 1.09005 * 109.44934 * 58.51855 * 16 15 14 42 42 H 1.09000 * 109.46940 * 55.06761 * 17 16 15 43 43 H 1.09005 * 109.47068 * 175.06163 * 17 16 15 44 44 H 0.96998 * 119.99532 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.49360 * 301.41403 * 26 16 15 46 46 H 1.08998 * 109.51967 * 181.33234 * 26 16 15 47 47 H 1.09005 * 109.58388 * 353.37069 * 27 13 11 48 48 H 1.08996 * 109.58673 * 113.65949 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8766 3.5097 0.0000 6 6 3.2505 3.6491 0.0005 7 6 4.0483 2.5135 0.0011 8 6 3.4321 1.2739 0.0065 9 6 4.2557 0.0119 0.0129 10 7 4.3276 -0.5312 -1.3458 11 6 5.0174 -1.6646 -1.5829 12 8 5.6545 -2.1868 -0.6886 13 7 5.0009 -2.2191 -2.8112 14 6 4.3259 -1.5442 -3.9281 15 6 5.3209 -1.4096 -5.0907 16 6 5.8812 -2.7909 -5.4377 17 6 6.8445 -2.6680 -6.6199 18 6 6.0842 -2.2257 -7.8435 19 1 5.0202 -2.0501 -7.7841 20 6 6.7469 -2.0450 -9.0390 21 7 8.0425 -2.2593 -9.1116 22 14 5.8043 -1.4974 -10.5559 23 1 4.3698 -1.3265 -10.2125 24 1 6.3540 -0.2059 -11.0408 25 1 5.9400 -2.5239 -11.6205 26 6 6.6278 -3.3588 -4.2284 27 6 5.6524 -3.5128 -3.0573 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.2514 4.3902 -0.0009 32 1 3.6994 4.6315 0.0013 33 1 5.1252 2.5950 0.0019 34 1 5.2614 0.2362 0.3683 35 1 3.7921 -0.7211 0.6731 36 1 3.8795 -0.0747 -2.0749 37 1 3.4662 -2.1343 -4.2457 38 1 3.9956 -0.5548 -3.6115 39 1 6.1371 -0.7485 -4.7996 40 1 4.8093 -0.9958 -5.9598 41 1 5.0618 -3.4583 -5.7047 42 1 7.6151 -1.9336 -6.3858 43 1 7.3101 -3.6348 -6.8112 44 1 8.5086 -2.1325 -9.9527 45 1 7.4318 -2.6793 -3.9453 46 1 7.0469 -4.3321 -4.4833 47 1 6.1978 -3.8227 -2.1658 48 1 4.8985 -4.2607 -3.3029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567746309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:12 Heat of formation + Delta-G solvation = -58.713200 kcal Electronic energy + Delta-G solvation = -28637.864938 eV Core-core repulsion = 24692.009782 eV Total energy + Delta-G solvation = -3945.855156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86149 -41.27002 -38.92237 -38.80530 -36.34764 -35.68302 -34.11586 -33.33648 -32.14123 -31.59679 -29.80464 -28.29979 -27.47837 -26.07137 -24.21218 -23.97642 -23.63622 -22.95416 -21.44914 -20.55118 -19.39900 -19.13249 -18.39193 -18.12323 -17.46385 -16.90789 -16.63048 -16.51191 -16.41272 -15.67953 -15.40868 -15.23524 -15.16805 -15.05723 -14.73001 -14.53556 -14.34827 -14.29732 -14.01392 -13.89628 -13.60129 -13.33817 -13.00576 -12.95861 -12.72695 -12.54214 -12.48180 -12.30095 -12.17388 -12.15491 -11.72420 -11.45200 -11.26835 -11.00528 -10.84163 -10.81822 -10.66272 -10.51759 -10.22212 -9.48910 -9.42943 -8.15239 -6.24693 0.00573 0.29782 1.41644 1.42602 1.54841 1.72134 2.11916 2.14561 2.43678 2.71224 3.02560 3.18674 3.28036 3.71735 3.82690 3.91773 4.02557 4.06410 4.09247 4.21292 4.26173 4.41839 4.42486 4.42915 4.51602 4.52995 4.61137 4.68283 4.76234 4.78052 4.83042 4.91080 4.98509 5.08711 5.10713 5.23586 5.32155 5.33975 5.39195 5.44019 5.49660 5.56471 5.60964 5.82812 5.91233 5.97254 6.22563 6.30655 6.82214 6.92517 6.93571 7.44115 7.53054 8.97031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002586 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.513653 B =10825.257975 C =11760.558644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.319 6.319 3 C 0.319 3.681 4 N -0.559 5.559 5 C 0.139 3.861 6 C -0.204 4.204 7 C -0.023 4.023 8 C -0.191 4.191 9 C 0.201 3.799 10 N -0.730 5.730 11 C 0.706 3.294 12 O -0.634 6.634 13 N -0.625 5.625 14 C 0.121 3.879 15 C -0.111 4.111 16 C -0.072 4.072 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.068 0.932 20 C -0.005 4.005 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.257 1.257 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.121 4.121 27 C 0.137 3.863 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.189 0.811 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.064 0.936 42 H -0.016 1.016 43 H -0.014 1.014 44 H 0.260 0.740 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.569 11.687 20.254 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.225 6.225 3 C 0.140 3.860 4 N -0.283 5.283 5 C -0.016 4.016 6 C -0.224 4.224 7 C -0.049 4.049 8 C -0.194 4.194 9 C 0.076 3.924 10 N -0.388 5.388 11 C 0.407 3.593 12 O -0.516 6.516 13 N -0.361 5.361 14 C -0.002 4.002 15 C -0.150 4.150 16 C -0.090 4.090 17 C -0.005 4.005 18 C -0.562 4.562 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.160 4.160 27 C 0.014 3.986 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.206 0.794 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.240 0.760 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.826 10.942 20.807 28.339 hybrid contribution 0.651 0.434 -1.447 1.645 sum -15.175 11.376 19.360 27.102 Atomic orbital electron populations 1.23008 0.76026 1.04232 1.02343 1.86295 1.24153 1.24693 1.87389 1.19885 0.89151 0.85163 0.91793 1.67425 1.41244 0.99392 1.20256 1.23092 0.94057 0.93749 0.90707 1.22369 0.94483 1.00859 1.04643 1.21766 1.02081 0.90175 0.90842 1.19867 0.90944 0.96595 1.12032 1.19660 0.98744 0.91246 0.82709 1.45210 1.56361 1.25991 1.11195 1.15937 0.79812 0.80878 0.82637 1.90851 1.49247 1.66005 1.45483 1.47361 1.58111 1.22958 1.07667 1.21846 0.94977 0.97629 0.85752 1.21847 0.98410 0.97118 0.97594 1.21020 0.97788 0.96426 0.93791 1.19022 0.94104 0.94341 0.93002 1.21703 0.95271 1.44294 0.94965 0.91411 1.25978 0.95686 0.95941 1.02553 1.70125 1.09714 1.51139 1.26951 0.85465 0.79386 0.77617 0.78986 1.18027 1.20848 1.20943 1.21922 0.97861 1.01240 0.94955 1.21445 0.95576 0.83502 0.98060 0.86938 0.92217 0.92316 0.79377 0.81185 0.82100 0.90591 0.91932 0.75981 0.89810 0.89210 0.93716 0.90601 0.91756 0.99809 0.99533 0.93084 0.93725 0.90886 0.90114 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -6.64 9.73 -90.01 -0.88 -7.52 16 3 C 0.32 6.37 7.47 84.78 0.63 7.00 16 4 N -0.56 -10.03 9.22 -308.93 -2.85 -12.87 16 5 C 0.14 1.66 11.18 84.64 0.95 2.61 16 6 C -0.20 -2.01 10.11 22.37 0.23 -1.78 16 7 C -0.02 -0.30 9.81 22.45 0.22 -0.08 16 8 C -0.19 -3.46 5.28 -19.67 -0.10 -3.57 16 9 C 0.20 4.38 5.49 85.63 0.47 4.86 16 10 N -0.73 -17.73 5.46 -482.28 -2.63 -20.36 16 11 C 0.71 22.00 8.30 179.05 1.49 23.49 16 12 O -0.63 -24.23 15.77 -4.00 -0.06 -24.29 16 13 N -0.62 -18.39 2.97 -836.06 -2.48 -20.87 16 14 C 0.12 3.12 6.42 86.51 0.56 3.67 16 15 C -0.11 -3.77 5.21 30.82 0.16 -3.61 16 16 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 17 C 0.03 1.66 4.45 29.85 0.13 1.80 16 18 C -0.52 -28.50 8.39 25.60 0.21 -28.29 16 19 H 0.07 3.46 7.06 -2.91 -0.02 3.43 16 20 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 21 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 22 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C -0.12 -4.20 5.36 30.67 0.16 -4.03 16 27 C 0.14 4.13 6.44 86.36 0.56 4.69 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.06 0.86 8.10 -2.38 -0.02 0.84 16 31 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.08 1.64 8.03 -2.39 -0.02 1.62 16 35 H 0.06 1.55 7.87 -2.39 -0.02 1.53 16 36 H 0.40 8.51 5.95 -92.71 -0.55 7.96 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.09 1.89 5.64 -2.39 -0.01 1.88 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 2.68 6.91 -2.38 -0.02 2.66 16 41 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.08 2.57 7.00 -2.38 -0.02 2.55 16 48 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -74.28 389.53 1.10 -73.18 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.41 Total: 18.20 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 7.28 Total: 5.91 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.67 Total: -110.87 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.94 Total: -31.81 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -74.28 1.10 -73.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567746309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.465 kcal (2) G-P(sol) polarization free energy of solvation -74.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds