Wall clock time and date at job start Tue Mar 31 2020 17:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47094 * 64.99896 * 4 3 2 6 6 C 1.42896 * 114.00028 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.50628 * 330.00914 * 6 5 4 8 8 C 1.53119 * 109.50504 * 209.92142 * 6 5 4 9 9 C 1.53106 * 109.16392 * 297.71755 * 8 6 5 10 10 H 1.08996 * 109.50539 * 62.31895 * 9 8 6 11 11 C 1.53006 * 109.50635 * 182.40363 * 9 8 6 12 12 O 1.42896 * 109.47126 * 184.99890 * 11 9 8 13 13 C 1.53041 * 109.27878 * 302.34516 * 9 8 6 14 14 N 1.46843 * 109.52411 * 59.17511 * 13 9 8 15 15 C 1.46900 * 110.99874 * 174.16122 * 14 13 9 16 16 C 1.53007 * 109.47178 * 190.00039 * 15 14 13 17 17 C 1.52998 * 109.47050 * 179.97438 * 16 15 14 18 18 S 1.81001 * 109.47043 * 180.02562 * 17 16 15 19 19 C 1.76198 * 100.00335 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99740 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00174 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99629 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99846 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46858 * 90.00168 * 23 21 19 25 25 H 1.48497 * 109.47199 * 209.99705 * 23 21 19 26 26 H 1.48497 * 109.47373 * 330.00191 * 23 21 19 27 27 C 1.46926 * 111.22417 * 298.26232 * 14 13 9 28 28 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 32 32 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 33 33 H 1.08995 * 109.47203 * 184.99963 * 4 3 2 34 34 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 35 35 H 1.09004 * 109.52161 * 57.62682 * 8 6 5 36 36 H 1.09005 * 109.52214 * 177.80642 * 8 6 5 37 37 H 1.09001 * 109.46785 * 304.99954 * 11 9 8 38 38 H 1.08998 * 109.46689 * 64.99957 * 11 9 8 39 39 H 0.96699 * 114.00093 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.46519 * 179.19813 * 13 9 8 41 41 H 1.09001 * 109.46202 * 299.16201 * 13 9 8 42 42 H 1.09004 * 109.47274 * 310.00164 * 15 14 13 43 43 H 1.09004 * 109.47305 * 70.00520 * 15 14 13 44 44 H 1.08992 * 109.47178 * 300.00603 * 16 15 14 45 45 H 1.09004 * 109.46609 * 60.00055 * 16 15 14 46 46 H 1.08995 * 109.47517 * 299.99879 * 17 16 15 47 47 H 1.09003 * 109.46792 * 60.00508 * 17 16 15 48 48 H 0.97009 * 119.99705 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.44879 * 301.73324 * 27 14 13 50 50 H 1.08998 * 109.51895 * 181.74086 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3822 0.4196 -1.3220 7 1 5.8790 1.2114 -0.7613 8 6 5.8007 0.4948 -2.7930 9 6 5.1453 -0.6559 -3.5615 10 1 4.0613 -0.5508 -3.5196 11 6 5.6057 -0.6236 -5.0203 12 8 4.9060 -1.6241 -5.7628 13 6 5.5553 -1.9862 -2.9257 14 7 5.1323 -2.0092 -1.5197 15 6 5.3855 -3.3239 -0.9152 16 6 4.7128 -3.3922 0.4574 17 6 4.9761 -4.7617 1.0867 18 16 4.1797 -4.8428 2.7101 19 6 4.6323 -6.4762 3.1917 20 1 5.2309 -7.0873 2.5323 21 6 4.2186 -6.9779 4.4179 22 7 3.4886 -6.2332 5.2212 23 14 4.6978 -8.7097 4.9281 24 1 5.9894 -8.6706 5.6600 25 1 3.6457 -9.2747 5.8108 26 1 4.8394 -9.5606 3.7194 27 6 5.7855 -0.9415 -0.7502 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8463 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 3.9785 2.1764 0.0902 34 1 3.8508 0.5684 0.8427 35 1 5.4770 1.4461 -3.2156 36 1 6.8850 0.4122 -2.8680 37 1 5.3961 0.3578 -5.4458 38 1 6.6770 -0.8188 -5.0675 39 1 5.1480 -1.6608 -6.6984 40 1 5.0789 -2.8071 -3.4618 41 1 6.6383 -2.0967 -2.9809 42 1 4.9786 -4.1041 -1.5585 43 1 6.4596 -3.4705 -0.8011 44 1 5.1197 -2.6120 1.1006 45 1 3.6388 -3.2456 0.3432 46 1 4.5688 -5.5416 0.4433 47 1 6.0501 -4.9087 1.2007 48 1 3.1998 -6.5838 6.0784 49 1 6.8674 -1.0568 -0.8157 50 1 5.4763 -1.0032 0.2932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576459186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:13 Heat of formation + Delta-G solvation = -179.143857 kcal Electronic energy + Delta-G solvation = -27493.074795 eV Core-core repulsion = 23645.148574 eV Total energy + Delta-G solvation = -3847.926221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76663 -38.97884 -37.89045 -37.60149 -35.46813 -34.60719 -32.99919 -31.97165 -30.26723 -27.99823 -27.21867 -27.12305 -26.72312 -24.06965 -23.43233 -23.12036 -21.57523 -20.63106 -19.55257 -18.27357 -17.66332 -17.49853 -17.25896 -16.90080 -16.64469 -16.41827 -16.25050 -16.08023 -15.90506 -15.63650 -15.23636 -14.96100 -14.65020 -14.46614 -14.17693 -14.10551 -13.68160 -13.48309 -13.32846 -13.09924 -13.01414 -12.91683 -12.81414 -12.73153 -12.49334 -12.39970 -12.22225 -11.94534 -11.78267 -11.68484 -11.54118 -11.31959 -11.16966 -11.12068 -10.78819 -10.55667 -10.35355 -10.28077 -9.12578 -8.67136 -8.37212 -6.13910 1.30529 1.39066 1.48242 1.73538 2.28049 2.71689 2.96289 2.96564 3.02652 3.32922 3.36704 3.76017 3.85629 3.99499 4.04222 4.12480 4.17159 4.27123 4.33027 4.36963 4.39723 4.41311 4.43520 4.48634 4.49747 4.56378 4.60678 4.61384 4.65903 4.67972 4.72757 4.77280 4.80585 4.82889 4.88801 4.90692 4.96193 5.02955 5.17432 5.27643 5.32095 5.39040 5.48611 6.13190 6.18000 6.21185 6.33890 6.53045 6.99346 7.04341 8.72438 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002813 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.630617 B = 9949.932863 C =11544.393608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.060 3.940 4 C 0.058 3.942 5 O -0.375 6.375 6 C 0.092 3.908 7 H 0.088 0.912 8 C -0.103 4.103 9 C -0.077 4.077 10 H 0.061 0.939 11 C 0.085 3.915 12 O -0.596 6.596 13 C 0.071 3.929 14 N -0.538 5.538 15 C 0.074 3.926 16 C -0.074 4.074 17 C -0.086 4.086 18 S -0.196 6.196 19 C -0.539 4.539 20 H 0.072 0.928 21 C 0.014 3.986 22 N -0.908 5.908 23 Si 0.996 3.004 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.263 1.263 27 C 0.028 3.972 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.395 0.605 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.272 0.728 49 H 0.050 0.950 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 19.835 -19.951 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.016 4.016 4 C -0.018 4.018 5 O -0.294 6.294 6 C 0.034 3.966 7 H 0.106 0.894 8 C -0.140 4.140 9 C -0.096 4.096 10 H 0.080 0.920 11 C 0.007 3.993 12 O -0.404 6.404 13 C -0.057 4.057 14 N -0.262 5.262 15 C -0.056 4.056 16 C -0.113 4.113 17 C -0.236 4.236 18 S 0.032 5.968 19 C -0.687 4.687 20 H 0.090 0.910 21 C -0.190 4.190 22 N -0.544 5.544 23 Si 0.818 3.182 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.188 1.188 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.262 20.381 -18.779 27.904 hybrid contribution 1.627 -1.879 -0.209 2.495 sum 4.890 18.501 -18.988 26.958 Atomic orbital electron populations 1.22830 0.80182 1.03030 1.00721 1.88030 1.20882 1.28859 1.95508 1.22696 0.92472 0.84860 1.01552 1.22678 0.93729 0.97854 0.87571 1.88046 1.21969 1.82011 1.37359 1.22236 0.82171 0.94831 0.97380 0.89418 1.21658 1.00950 0.98726 0.92705 1.21016 1.01080 0.94219 0.93290 0.92012 1.22226 0.95373 0.91192 0.90547 1.86494 1.68400 1.58700 1.26837 1.22017 0.97490 0.98570 0.87601 1.61704 1.59433 1.02759 1.02327 1.21944 0.97886 0.91201 0.94567 1.21067 1.00947 0.93939 0.95324 1.23144 1.01876 1.00560 0.97973 1.84697 1.71477 1.22327 1.18280 1.23044 1.39160 0.99752 1.06709 0.90992 1.26096 0.94305 1.03407 0.95225 1.70169 1.35111 1.38800 1.10341 0.84990 0.78339 0.76511 0.78396 1.19111 1.19806 1.18764 1.22727 0.96527 0.92733 0.98034 0.92946 0.92952 0.90281 0.91963 0.90338 0.89131 0.94266 0.89477 0.88746 0.91877 0.92243 0.75503 0.91935 0.94509 0.91074 0.94392 0.92225 0.92648 0.92180 0.91853 0.91945 0.93201 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -12.37 10.67 -144.34 -1.54 -13.91 16 3 C 0.06 1.30 6.32 71.98 0.45 1.75 16 4 C 0.06 1.24 6.13 71.98 0.44 1.68 16 5 O -0.37 -9.32 9.28 -144.34 -1.34 -10.66 16 6 C 0.09 1.79 2.94 30.65 0.09 1.88 16 7 H 0.09 1.27 7.79 -2.39 -0.02 1.25 16 8 C -0.10 -1.57 5.01 30.67 0.15 -1.41 16 9 C -0.08 -1.55 2.43 -10.74 -0.03 -1.58 16 10 H 0.06 1.69 7.80 -2.39 -0.02 1.67 16 11 C 0.08 1.23 6.43 71.98 0.46 1.69 16 12 O -0.60 -10.55 13.22 -148.98 -1.97 -12.52 16 13 C 0.07 1.70 4.63 86.33 0.40 2.10 16 14 N -0.54 -15.27 4.54 -896.12 -4.07 -19.34 16 15 C 0.07 2.27 4.96 86.31 0.43 2.69 16 16 C -0.07 -2.78 5.15 30.60 0.16 -2.62 16 17 C -0.09 -3.79 5.67 71.98 0.41 -3.38 16 18 S -0.20 -11.11 21.44 -56.49 -1.21 -12.33 16 19 C -0.54 -32.43 9.50 67.95 0.65 -31.78 16 20 H 0.07 4.17 7.80 -2.91 -0.02 4.15 16 21 C 0.01 0.85 5.49 84.86 0.47 1.31 16 22 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 23 Si 1.00 45.17 29.55 68.60 2.03 47.20 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.03 0.68 4.95 86.31 0.43 1.11 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.04 0.98 7.87 -2.39 -0.02 0.96 16 35 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.40 3.04 9.12 -74.06 -0.68 2.37 16 40 H 0.06 1.71 7.73 -2.39 -0.02 1.69 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 2.20 7.99 -2.38 -0.02 2.18 16 43 H 0.04 1.09 8.12 -2.38 -0.02 1.07 16 44 H 0.06 2.26 6.43 -2.39 -0.02 2.24 16 45 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.06 2.62 8.14 -2.40 -0.02 2.61 16 47 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 49 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.06 1.80 5.94 -2.39 -0.01 1.78 16 Total: -1.00 -78.79 410.85 -1.84 -80.62 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.22 Total: 21.72 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.76 Total: -24.66 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -3.78 Total: -75.47 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -4.85 Total: -37.09 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -1.21 Total: -12.33 kcal Total: -78.79 -1.84 -80.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576459186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.519 kcal (2) G-P(sol) polarization free energy of solvation -78.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds