Wall clock time and date at job start Tue Mar 31 2020 17:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 116.99829 * 2 1 4 4 N 1.32271 * 119.68448 * 359.97438 * 3 2 1 5 5 C 1.31935 * 121.64778 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.83402 * 0.02562 * 5 4 3 7 7 C 1.38790 * 119.28606 * 359.72053 * 6 5 4 8 8 C 1.38418 * 118.48163 * 0.54487 * 7 6 5 9 9 C 1.50707 * 120.43994 * 179.73747 * 8 7 6 10 10 C 1.53006 * 109.46531 * 264.71999 * 9 8 7 11 11 N 1.46506 * 109.46605 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99459 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00473 * 355.02137 * 12 11 10 14 14 N 1.34783 * 119.99530 * 175.01528 * 12 11 10 15 15 C 1.46928 * 120.62606 * 184.94769 * 14 12 11 16 16 C 1.52760 * 109.00555 * 233.58435 * 15 14 12 17 17 C 1.53038 * 109.38634 * 305.59204 * 16 15 14 18 18 C 1.50701 * 109.45028 * 181.25857 * 17 16 15 19 19 H 1.08001 * 119.99703 * 239.93827 * 18 17 16 20 20 C 1.37876 * 120.00241 * 59.93618 * 18 17 16 21 21 N 1.31516 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99735 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47002 * 90.00200 * 22 20 18 24 24 H 1.48502 * 109.46769 * 209.99656 * 22 20 18 25 25 H 1.48495 * 109.47304 * 329.99703 * 22 20 18 26 26 C 1.53038 * 109.53709 * 61.23919 * 17 16 15 27 27 C 1.46924 * 120.63040 * 5.23044 * 14 12 11 28 28 H 1.09006 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46976 * 299.99771 * 1 2 3 30 30 H 1.08999 * 109.47421 * 60.00229 * 1 2 3 31 31 H 1.08004 * 119.58471 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.36125 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.75924 * 180.29991 * 7 6 5 34 34 H 1.08993 * 109.47361 * 24.71768 * 9 8 7 35 35 H 1.09002 * 109.47278 * 144.72035 * 9 8 7 36 36 H 1.09002 * 109.46999 * 299.99668 * 10 9 8 37 37 H 1.09002 * 109.47310 * 60.00056 * 10 9 8 38 38 H 0.96995 * 120.00104 * 0.02562 * 11 10 9 39 39 H 1.08997 * 109.58905 * 353.42490 * 15 14 12 40 40 H 1.09003 * 109.58296 * 113.84827 * 15 14 12 41 41 H 1.09007 * 109.56108 * 185.55733 * 16 15 14 42 42 H 1.08994 * 109.35753 * 65.50766 * 16 15 14 43 43 H 1.09002 * 109.46127 * 301.21952 * 17 16 15 44 44 H 0.96994 * 119.99458 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.49680 * 178.68435 * 26 17 16 46 46 H 1.08999 * 109.52570 * 58.60607 * 26 17 16 47 47 H 1.08998 * 109.58519 * 246.15143 * 27 14 12 48 48 H 1.08997 * 109.58951 * 6.43880 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3142 -0.0005 5 6 1.8767 3.5096 -0.0010 6 6 3.2505 3.6491 -0.0016 7 6 4.0482 2.5134 0.0043 8 6 3.4321 1.2739 -0.0010 9 6 4.2558 0.0119 -0.0009 10 6 4.4287 -0.4842 -1.4379 11 7 5.2288 -1.7115 -1.4378 12 6 5.5110 -2.3320 -2.6005 13 8 5.0273 -1.9258 -3.6394 14 7 6.3295 -3.4028 -2.6115 15 6 6.7328 -4.0236 -3.8806 16 6 6.4129 -5.5164 -3.8279 17 6 7.0681 -6.1330 -2.5899 18 6 6.7793 -7.6116 -2.5531 19 1 6.2473 -8.0371 -1.7150 20 6 7.1940 -8.4211 -3.5892 21 7 7.8414 -7.9028 -4.6100 22 14 6.8353 -10.2538 -3.5438 23 1 5.5252 -10.5179 -4.1912 24 1 7.9033 -10.9854 -4.2713 25 1 6.7922 -10.7149 -2.1329 26 6 6.5049 -5.4718 -1.3299 27 6 6.8304 -3.9750 -1.3544 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.2513 4.3902 -0.0019 32 1 3.6994 4.6314 -0.0024 33 1 5.1252 2.5949 0.0089 34 1 5.2344 0.2167 0.4330 35 1 3.7495 -0.7523 0.5889 36 1 3.4500 -0.6891 -1.8718 37 1 4.9349 0.2800 -2.0277 38 1 5.5549 -2.0778 -0.6009 39 1 6.1856 -3.5628 -4.7030 40 1 7.8039 -3.8873 -4.0299 41 1 6.7973 -6.0039 -4.7239 42 1 5.3329 -5.6528 -3.7740 43 1 8.1457 -5.9745 -2.6325 44 1 8.1334 -8.4724 -5.3387 45 1 6.9548 -5.9275 -0.4479 46 1 5.4240 -5.6086 -1.2988 47 1 7.9096 -3.8347 -1.2935 48 1 6.3495 -3.4805 -0.5105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576796732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:54 Heat of formation + Delta-G solvation = -33.865217 kcal Electronic energy + Delta-G solvation = -28318.302432 eV Core-core repulsion = 24373.524765 eV Total energy + Delta-G solvation = -3944.777667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04958 -39.87110 -38.14245 -37.05185 -35.63115 -33.68352 -33.20974 -31.66230 -30.99283 -30.17327 -28.68209 -27.50197 -26.10911 -24.26084 -23.29454 -22.92856 -22.20659 -21.70263 -20.17219 -18.87190 -18.60289 -17.62872 -17.43116 -16.43815 -16.29664 -15.98256 -15.66887 -15.37451 -14.71635 -14.57535 -14.53954 -14.17988 -13.98151 -13.69664 -13.60795 -13.35081 -13.14715 -12.78005 -12.65657 -12.39968 -12.23818 -12.14978 -11.94342 -11.73933 -11.52390 -11.35962 -11.08292 -10.91445 -10.64141 -10.40033 -10.10565 -10.02938 -9.97730 -9.71411 -9.52805 -9.15903 -8.92264 -8.84997 -8.72347 -8.34494 -7.84610 -5.99665 -4.06295 0.76303 0.94820 2.82319 3.03664 3.30270 3.37307 3.39680 3.43024 3.62199 3.95631 4.23493 4.42953 4.44603 4.62067 4.63232 4.85821 4.93368 4.98645 5.05946 5.07805 5.20884 5.30028 5.38429 5.40556 5.47972 5.61877 5.77164 5.79106 5.82987 5.95413 6.00132 6.08909 6.11029 6.30551 6.46208 6.53692 6.64943 6.70007 6.85531 6.93823 7.01655 7.18767 7.28418 7.50926 7.53404 7.73897 7.96221 8.09217 8.36317 8.42969 8.96943 9.00601 9.58596 11.05702 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002122 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.873071 B =13194.099516 C =13704.263175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.327 3.673 4 N -0.540 5.540 5 C 0.135 3.865 6 C -0.210 4.210 7 C -0.037 4.037 8 C -0.148 4.148 9 C -0.079 4.079 10 C 0.148 3.852 11 N -0.753 5.753 12 C 0.705 3.295 13 O -0.601 6.601 14 N -0.619 5.619 15 C 0.127 3.873 16 C -0.124 4.124 17 C 0.050 3.950 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.124 4.124 27 C 0.114 3.886 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.158 0.842 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.394 0.606 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 22.112 12.287 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.147 3.853 4 N -0.264 5.264 5 C -0.021 4.021 6 C -0.230 4.230 7 C -0.063 4.063 8 C -0.151 4.151 9 C -0.118 4.118 10 C 0.024 3.976 11 N -0.411 5.411 12 C 0.406 3.594 13 O -0.480 6.480 14 N -0.355 5.355 15 C 0.005 3.995 16 C -0.163 4.163 17 C 0.031 3.969 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.162 4.162 27 C -0.010 4.010 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.231 0.769 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.310 21.995 11.334 26.437 hybrid contribution 0.541 -0.968 0.431 1.189 sum -8.769 21.027 11.765 25.641 Atomic orbital electron populations 1.22883 0.77094 1.03220 1.02301 1.86288 1.22946 1.24171 1.87334 1.19702 0.88904 0.84876 0.91780 1.67345 1.40883 0.98850 1.19292 1.22408 0.92988 0.93625 0.93065 1.21983 0.94898 0.99816 1.06332 1.21404 1.00777 0.90706 0.93386 1.19693 0.91091 0.96426 1.07917 1.20573 0.99450 0.94316 0.97412 1.21014 0.95842 0.85551 0.95237 1.45244 1.59123 1.28571 1.08211 1.15850 0.79569 0.80274 0.83660 1.90865 1.56905 1.68577 1.31652 1.47453 1.49667 1.29778 1.08611 1.21670 0.98633 0.95575 0.83645 1.21949 0.99496 0.90634 1.04192 1.18621 0.95429 0.93994 0.88849 1.21185 1.36363 0.92315 1.05242 0.92771 1.24968 0.95012 0.98491 0.95546 1.69845 1.38769 1.35178 1.09085 0.86620 0.77928 0.85558 0.78029 1.20748 1.21274 1.20012 1.22012 1.00887 0.92084 1.01250 1.21700 0.98562 0.96059 0.84631 0.88427 0.92390 0.92241 0.82441 0.84455 0.83983 0.90121 0.89575 0.91569 0.92051 0.76919 0.90586 0.92618 0.87849 0.94390 0.95488 0.92966 0.92178 0.92898 0.91969 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.40 9.63 -18.73 -0.18 -3.58 16 3 C 0.33 3.60 7.47 -17.13 -0.13 3.47 16 4 N -0.54 -5.63 9.22 -13.33 -0.12 -5.76 16 5 C 0.13 1.05 11.18 -17.56 -0.20 0.85 16 6 C -0.21 -1.41 10.11 -39.43 -0.40 -1.81 16 7 C -0.04 -0.28 9.83 -39.31 -0.39 -0.67 16 8 C -0.15 -1.41 5.16 -104.32 -0.54 -1.95 16 9 C -0.08 -0.72 5.20 -27.88 -0.15 -0.86 16 10 C 0.15 1.84 5.66 -4.04 -0.02 1.82 16 11 N -0.75 -10.51 5.47 -65.21 -0.36 -10.86 16 12 C 0.70 13.14 8.30 -86.91 -0.72 12.42 16 13 O -0.60 -13.42 15.77 5.29 0.08 -13.34 16 14 N -0.62 -11.51 2.98 -178.76 -0.53 -12.04 16 15 C 0.13 2.62 6.41 -3.93 -0.03 2.60 16 16 C -0.12 -2.93 5.14 -26.83 -0.14 -3.06 16 17 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 18 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 21 N -0.89 -24.91 11.30 55.43 0.63 -24.29 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.12 -2.40 5.30 -26.61 -0.14 -2.55 16 27 C 0.11 1.83 6.39 -3.71 -0.02 1.81 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.09 0.80 7.71 -51.93 -0.40 0.40 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.39 4.51 5.96 -40.82 -0.24 4.26 16 39 H 0.08 1.63 6.99 -51.93 -0.36 1.26 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 2.71 6.03 -51.93 -0.31 2.39 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 0.75 5.64 -51.93 -0.29 0.45 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -33.08 387.78 -9.54 -42.62 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.49 Total: 3.34 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.39 Total: 1.99 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.39 Total: -52.95 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.10 Total: -16.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.08 -9.54 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.759 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds