Wall clock time and date at job start Tue Mar 31 2020 17:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 116.99829 * 2 1 4 4 N 1.32271 * 119.68448 * 359.97438 * 3 2 1 5 5 C 1.31935 * 121.64778 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.83402 * 0.02562 * 5 4 3 7 7 C 1.38790 * 119.28606 * 359.72053 * 6 5 4 8 8 C 1.38418 * 118.48163 * 0.54487 * 7 6 5 9 9 C 1.50707 * 120.43994 * 179.73747 * 8 7 6 10 10 C 1.53006 * 109.46531 * 264.71999 * 9 8 7 11 11 N 1.46506 * 109.46605 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99459 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00473 * 355.02137 * 12 11 10 14 14 N 1.34783 * 119.99530 * 175.01528 * 12 11 10 15 15 C 1.46928 * 120.62606 * 184.94769 * 14 12 11 16 16 C 1.52760 * 109.00555 * 233.58435 * 15 14 12 17 17 C 1.53038 * 109.38634 * 305.59204 * 16 15 14 18 18 C 1.50701 * 109.45028 * 181.25857 * 17 16 15 19 19 H 1.08001 * 119.99703 * 239.93827 * 18 17 16 20 20 C 1.37876 * 120.00241 * 59.93618 * 18 17 16 21 21 N 1.31516 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99735 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47002 * 90.00200 * 22 20 18 24 24 H 1.48502 * 109.46769 * 209.99656 * 22 20 18 25 25 H 1.48495 * 109.47304 * 329.99703 * 22 20 18 26 26 C 1.53038 * 109.53709 * 61.23919 * 17 16 15 27 27 C 1.46924 * 120.63040 * 5.23044 * 14 12 11 28 28 H 1.09006 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46976 * 299.99771 * 1 2 3 30 30 H 1.08999 * 109.47421 * 60.00229 * 1 2 3 31 31 H 1.08004 * 119.58471 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.36125 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.75924 * 180.29991 * 7 6 5 34 34 H 1.08993 * 109.47361 * 24.71768 * 9 8 7 35 35 H 1.09002 * 109.47278 * 144.72035 * 9 8 7 36 36 H 1.09002 * 109.46999 * 299.99668 * 10 9 8 37 37 H 1.09002 * 109.47310 * 60.00056 * 10 9 8 38 38 H 0.96995 * 120.00104 * 0.02562 * 11 10 9 39 39 H 1.08997 * 109.58905 * 353.42490 * 15 14 12 40 40 H 1.09003 * 109.58296 * 113.84827 * 15 14 12 41 41 H 1.09007 * 109.56108 * 185.55733 * 16 15 14 42 42 H 1.08994 * 109.35753 * 65.50766 * 16 15 14 43 43 H 1.09002 * 109.46127 * 301.21952 * 17 16 15 44 44 H 0.96994 * 119.99458 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.49680 * 178.68435 * 26 17 16 46 46 H 1.08999 * 109.52570 * 58.60607 * 26 17 16 47 47 H 1.08998 * 109.58519 * 246.15143 * 27 14 12 48 48 H 1.08997 * 109.58951 * 6.43880 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3142 -0.0005 5 6 1.8767 3.5096 -0.0010 6 6 3.2505 3.6491 -0.0016 7 6 4.0482 2.5134 0.0043 8 6 3.4321 1.2739 -0.0010 9 6 4.2558 0.0119 -0.0009 10 6 4.4287 -0.4842 -1.4379 11 7 5.2288 -1.7115 -1.4378 12 6 5.5110 -2.3320 -2.6005 13 8 5.0273 -1.9258 -3.6394 14 7 6.3295 -3.4028 -2.6115 15 6 6.7328 -4.0236 -3.8806 16 6 6.4129 -5.5164 -3.8279 17 6 7.0681 -6.1330 -2.5899 18 6 6.7793 -7.6116 -2.5531 19 1 6.2473 -8.0371 -1.7150 20 6 7.1940 -8.4211 -3.5892 21 7 7.8414 -7.9028 -4.6100 22 14 6.8353 -10.2538 -3.5438 23 1 5.5252 -10.5179 -4.1912 24 1 7.9033 -10.9854 -4.2713 25 1 6.7922 -10.7149 -2.1329 26 6 6.5049 -5.4718 -1.3299 27 6 6.8304 -3.9750 -1.3544 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.2513 4.3902 -0.0019 32 1 3.6994 4.6314 -0.0024 33 1 5.1252 2.5949 0.0089 34 1 5.2344 0.2167 0.4330 35 1 3.7495 -0.7523 0.5889 36 1 3.4500 -0.6891 -1.8718 37 1 4.9349 0.2800 -2.0277 38 1 5.5549 -2.0778 -0.6009 39 1 6.1856 -3.5628 -4.7030 40 1 7.8039 -3.8873 -4.0299 41 1 6.7973 -6.0039 -4.7239 42 1 5.3329 -5.6528 -3.7740 43 1 8.1457 -5.9745 -2.6325 44 1 8.1334 -8.4724 -5.3387 45 1 6.9548 -5.9275 -0.4479 46 1 5.4240 -5.6086 -1.2988 47 1 7.9096 -3.8347 -1.2935 48 1 6.3495 -3.4805 -0.5105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576796732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:53 Heat of formation + Delta-G solvation = -55.986527 kcal Electronic energy + Delta-G solvation = -28319.261684 eV Core-core repulsion = 24373.524765 eV Total energy + Delta-G solvation = -3945.736919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72231 -41.30633 -38.82368 -38.61421 -36.74246 -35.38529 -34.33473 -32.86984 -32.27977 -31.67805 -29.64696 -28.19699 -27.85585 -25.34430 -24.50610 -23.92487 -23.71947 -22.55862 -21.75691 -20.38070 -19.30273 -19.08686 -18.30614 -18.09390 -17.43100 -16.93727 -16.68541 -16.53732 -16.33773 -15.71111 -15.35035 -15.27015 -15.06621 -14.92479 -14.89058 -14.50799 -14.40192 -14.20479 -13.92477 -13.85893 -13.43221 -13.02380 -13.00579 -12.95870 -12.80698 -12.69449 -12.45753 -12.21928 -12.14923 -12.11609 -11.91985 -11.42374 -11.34069 -10.93228 -10.78215 -10.71334 -10.58761 -10.39859 -10.20762 -9.37553 -9.36520 -8.06362 -6.20068 0.14983 0.35341 1.41491 1.43299 1.52160 1.71079 2.14953 2.18689 2.44614 2.78726 2.97171 3.20161 3.39007 3.86658 3.94415 4.03440 4.11950 4.12538 4.22802 4.28495 4.35653 4.40107 4.40915 4.43543 4.51274 4.56559 4.62499 4.70643 4.74385 4.75178 4.92442 4.94305 5.00010 5.07783 5.18250 5.21025 5.25545 5.32550 5.48020 5.51104 5.52149 5.56600 5.67386 5.99787 6.08451 6.13649 6.26892 6.40051 6.88742 6.91503 7.02440 7.47846 7.57672 8.97029 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002122 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.873071 B =13194.099516 C =13704.263175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.299 3.701 4 N -0.564 5.564 5 C 0.123 3.877 6 C -0.203 4.203 7 C -0.037 4.037 8 C -0.165 4.165 9 C -0.065 4.065 10 C 0.152 3.848 11 N -0.731 5.731 12 C 0.701 3.299 13 O -0.643 6.643 14 N -0.621 5.621 15 C 0.139 3.861 16 C -0.112 4.112 17 C 0.045 3.955 18 C -0.531 4.531 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.915 5.915 22 Si 0.950 3.050 23 H -0.282 1.282 24 H -0.284 1.284 25 H -0.267 1.267 26 C -0.117 4.117 27 C 0.118 3.882 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.184 0.816 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.017 0.983 43 H 0.007 0.993 44 H 0.260 0.740 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.079 0.921 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.631 23.711 14.591 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.229 6.229 3 C 0.121 3.879 4 N -0.287 5.287 5 C -0.032 4.032 6 C -0.222 4.222 7 C -0.062 4.062 8 C -0.168 4.168 9 C -0.103 4.103 10 C 0.028 3.972 11 N -0.390 5.390 12 C 0.402 3.598 13 O -0.525 6.525 14 N -0.358 5.358 15 C 0.016 3.984 16 C -0.151 4.151 17 C 0.027 3.973 18 C -0.569 4.569 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.555 5.555 22 Si 0.776 3.224 23 H -0.208 1.208 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.155 4.155 27 C -0.005 4.005 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.201 0.799 32 H 0.187 0.813 33 H 0.187 0.813 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.036 0.964 43 H 0.025 0.975 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.695 23.604 13.705 28.646 hybrid contribution 0.315 -1.381 -0.291 1.446 sum -8.380 22.223 13.415 27.277 Atomic orbital electron populations 1.22965 0.76365 1.04120 1.02092 1.86243 1.23895 1.24994 1.87745 1.20015 0.89744 0.84949 0.93232 1.67336 1.41720 0.99611 1.20082 1.22990 0.94283 0.93563 0.92396 1.22373 0.94390 1.01104 1.04370 1.21809 1.02267 0.90063 0.92102 1.19853 0.90612 0.97391 1.08951 1.20460 1.00907 0.94121 0.94796 1.21051 0.93943 0.84605 0.97589 1.45082 1.58203 1.28435 1.07326 1.16038 0.79206 0.80258 0.84291 1.90838 1.58380 1.69709 1.33616 1.47403 1.49818 1.29921 1.08612 1.21324 0.98844 0.93447 0.84820 1.21715 0.97749 0.92646 1.03025 1.18605 0.94327 0.93262 0.91125 1.21593 1.36093 0.94120 1.05142 0.92933 1.25718 0.95060 1.02530 0.95387 1.69977 1.39574 1.36401 1.09537 0.85679 0.77536 0.80866 0.78292 1.20782 1.20984 1.19106 1.21877 0.99981 0.94316 0.99350 1.21833 1.00056 0.93840 0.84729 0.86991 0.92058 0.92946 0.79928 0.81279 0.81294 0.87218 0.89839 0.94378 0.92304 0.75065 0.91766 0.91863 0.90885 0.96420 0.97536 0.93086 0.90598 0.93874 0.90316 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 113.37 1.18 1.87 16 2 O -0.32 -7.37 9.63 -89.94 -0.87 -8.23 16 3 C 0.30 6.49 7.47 84.78 0.63 7.12 16 4 N -0.56 -11.45 9.22 -308.94 -2.85 -14.29 16 5 C 0.12 1.68 11.18 84.64 0.95 2.63 16 6 C -0.20 -2.10 10.11 22.37 0.23 -1.87 16 7 C -0.04 -0.45 9.83 22.44 0.22 -0.23 16 8 C -0.16 -2.88 5.16 -19.67 -0.10 -2.98 16 9 C -0.06 -1.03 5.20 29.85 0.16 -0.87 16 10 C 0.15 3.59 5.66 86.38 0.49 4.07 16 11 N -0.73 -18.85 5.47 -478.50 -2.62 -21.47 16 12 C 0.70 25.41 8.30 179.05 1.49 26.90 16 13 O -0.64 -28.95 15.77 -4.00 -0.06 -29.02 16 14 N -0.62 -22.40 2.98 -837.74 -2.50 -24.89 16 15 C 0.14 5.81 6.41 86.22 0.55 6.37 16 16 C -0.11 -5.46 5.14 30.53 0.16 -5.31 16 17 C 0.05 2.18 2.07 -11.51 -0.02 2.16 16 18 C -0.53 -28.68 8.56 25.60 0.22 -28.46 16 19 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 20 C 0.01 0.64 5.30 84.65 0.45 1.09 16 21 N -0.92 -52.38 11.30 21.45 0.24 -52.13 16 22 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 C -0.12 -4.36 5.30 30.67 0.16 -4.20 16 27 C 0.12 3.45 6.39 86.36 0.55 4.00 16 28 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.11 1.11 8.06 -2.39 -0.02 1.09 16 35 H 0.08 1.39 7.71 -2.39 -0.02 1.37 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 7.86 5.96 -92.71 -0.55 7.31 16 39 H 0.06 2.83 6.99 -2.39 -0.02 2.81 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.07 3.99 6.03 -2.38 -0.01 3.98 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.10 2.13 5.64 -2.39 -0.01 2.12 16 Total: -1.00 -74.72 387.78 1.09 -73.63 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.41 Total: 18.58 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 7.30 Total: 12.28 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -7.72 Total: -112.79 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.93 Total: -37.25 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.72 1.09 -73.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.645 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds