Wall clock time and date at job start Tue Mar 31 2020 17:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.53007 * 109.47018 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47326 * 64.99366 * 4 3 2 6 6 C 1.46496 * 119.99749 * 270.00413 * 5 4 3 7 7 C 1.50708 * 109.46849 * 269.99643 * 6 5 4 8 8 H 1.08003 * 119.99900 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99822 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00416 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99761 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47168 * 60.00882 * 11 9 7 13 13 H 1.48504 * 109.46851 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47448 * 300.00385 * 11 9 7 15 15 C 1.34775 * 119.99934 * 90.00049 * 5 4 3 16 16 O 1.21595 * 119.99952 * 0.02562 * 15 5 4 17 17 N 1.34769 * 119.99995 * 179.97438 * 15 5 4 18 18 C 1.40201 * 120.00034 * 184.59506 * 17 15 5 19 19 C 1.38860 * 119.99479 * 324.91180 * 18 17 15 20 20 C 1.37975 * 119.83620 * 180.02562 * 19 18 17 21 21 C 1.39058 * 120.13182 * 359.94941 * 20 19 18 22 22 C 1.38592 * 120.13810 * 359.95954 * 21 20 19 23 23 C 1.38484 * 119.62360 * 359.86891 * 22 21 20 24 24 C 1.50609 * 121.50528 * 180.24533 * 22 21 20 25 25 C 1.52851 * 110.50302 * 339.32532 * 24 22 21 26 26 C 1.53431 * 108.84830 * 51.42314 * 25 24 22 27 27 N 1.40196 * 119.06763 * 179.78810 * 21 20 19 28 28 H 1.09004 * 109.47230 * 300.00241 * 1 2 3 29 29 H 1.09003 * 109.47470 * 60.00126 * 1 2 3 30 30 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47494 * 59.99375 * 3 2 1 32 32 H 1.09008 * 109.47055 * 299.99683 * 3 2 1 33 33 H 1.09003 * 109.46426 * 304.99153 * 4 3 2 34 34 H 1.09001 * 109.46972 * 184.99779 * 4 3 2 35 35 H 1.08996 * 109.47812 * 29.99673 * 6 5 4 36 36 H 1.09003 * 109.47092 * 150.00651 * 6 5 4 37 37 H 0.97000 * 120.00556 * 179.97438 * 10 9 7 38 38 H 0.96999 * 119.99893 * 4.60188 * 17 15 5 39 39 H 1.08003 * 120.08278 * 0.06383 * 19 18 17 40 40 H 1.07999 * 119.93734 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.87101 * 180.15118 * 23 22 21 42 42 H 1.08990 * 109.26977 * 219.05711 * 24 22 21 43 43 H 1.09008 * 109.24144 * 99.56463 * 24 22 21 44 44 H 1.09007 * 109.57204 * 291.61356 * 25 24 22 45 45 H 1.08994 * 109.67847 * 171.30107 * 25 24 22 46 46 H 1.08997 * 109.79401 * 177.17565 * 26 25 24 47 47 H 1.09004 * 109.79133 * 56.32138 * 26 25 24 48 48 H 0.97002 * 120.54787 * 346.76335 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3425 7 6 5.5010 -1.2978 -0.9446 8 1 6.2196 -0.5459 -0.6535 9 6 5.8603 -2.6289 -0.9512 10 7 4.9852 -3.5445 -1.3052 11 14 7.5902 -3.1317 -0.4573 12 1 7.8530 -2.6962 0.9379 13 1 7.7215 -4.6081 -0.5485 14 1 8.5714 -2.4907 -1.3691 15 6 4.2615 1.3336 -2.3218 16 8 4.1544 2.5425 -2.2470 17 7 4.6670 0.7630 -3.4734 18 6 5.0566 1.5661 -4.5545 19 6 4.4140 2.7746 -4.7885 20 6 4.7997 3.5622 -5.8538 21 6 5.8299 3.1481 -6.6910 22 6 6.4739 1.9432 -6.4585 23 6 6.0875 1.1562 -5.3865 24 6 7.5969 1.4676 -7.3423 25 6 7.5441 2.1692 -8.6992 26 6 7.4609 3.6842 -8.4709 27 7 6.2006 3.9637 -7.7695 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8901 33 1 3.8514 0.5684 0.8411 34 1 3.9785 2.1766 0.0889 35 1 3.3853 -1.3629 -0.6731 36 1 3.9121 -1.2116 -2.3666 37 1 5.2381 -4.4810 -1.3102 38 1 4.6893 -0.2034 -3.5543 39 1 3.6148 3.0977 -4.1379 40 1 4.3008 4.5022 -6.0375 41 1 6.5883 0.2177 -5.2001 42 1 7.5072 0.3915 -7.4900 43 1 8.5502 1.6864 -6.8610 44 1 6.6651 1.8340 -9.2497 45 1 8.4432 1.9346 -9.2689 46 1 7.4729 4.2031 -9.4294 47 1 8.3031 4.0125 -7.8619 48 1 5.6345 4.7006 -8.0477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591309803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:42 Heat of formation + Delta-G solvation = -41.540409 kcal Electronic energy + Delta-G solvation = -29079.684311 eV Core-core repulsion = 25134.573822 eV Total energy + Delta-G solvation = -3945.110488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.21312 -39.24072 -37.53034 -36.36015 -34.80378 -33.68271 -33.05047 -32.55542 -30.03706 -29.62113 -28.24511 -26.96989 -25.83956 -24.56457 -23.29296 -22.85918 -22.45642 -21.95492 -19.91132 -18.73214 -17.57079 -17.13478 -16.64975 -16.34783 -16.04733 -15.78936 -15.56068 -14.92142 -14.66236 -14.53521 -14.43644 -14.01054 -13.80939 -13.66513 -13.41616 -13.19535 -13.13196 -12.79682 -12.49571 -12.33616 -12.02013 -11.78872 -11.67099 -11.42684 -11.40253 -11.11404 -10.95421 -10.91323 -10.82966 -10.60461 -10.49546 -10.23910 -10.12128 -9.70420 -9.37696 -9.21406 -8.70555 -8.50371 -8.35179 -7.66254 -6.75864 -6.11793 -4.19581 1.75313 1.92328 3.27910 3.32511 3.34943 3.44621 3.58691 3.84911 4.19962 4.31372 4.37447 4.70073 4.78900 4.86721 4.94315 5.20645 5.21785 5.34679 5.43410 5.45046 5.52755 5.57727 5.67031 5.70109 5.70746 5.75224 5.77804 5.82009 5.88795 5.93080 6.07487 6.12139 6.13057 6.39685 6.42905 6.43336 6.63402 6.83819 6.90495 7.02486 7.29898 7.37073 7.49349 7.52884 7.65624 7.83012 7.88638 7.94288 8.13406 8.66789 8.92367 9.35924 9.48981 10.94038 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.003719 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.120766 B = 7527.074594 C = 9772.689348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.604 5.604 6 C 0.243 3.757 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.708 3.292 16 O -0.613 6.613 17 N -0.681 5.681 18 C 0.135 3.865 19 C -0.082 4.082 20 C -0.172 4.172 21 C 0.186 3.814 22 C -0.136 4.136 23 C -0.109 4.109 24 C -0.070 4.070 25 C -0.137 4.137 26 C 0.127 3.873 27 N -0.760 5.760 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.415 0.585 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 10.816 -10.393 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.032 4.032 4 C 0.016 3.984 5 N -0.337 5.337 6 C 0.123 3.877 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.410 3.590 16 O -0.495 6.495 17 N -0.329 5.329 18 C 0.038 3.962 19 C -0.103 4.103 20 C -0.195 4.195 21 C 0.086 3.914 22 C -0.140 4.140 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.175 4.175 26 C 0.002 3.998 27 N -0.394 5.394 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.255 0.745 39 H 0.157 0.843 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.125 11.149 -10.323 15.236 hybrid contribution 0.536 -0.480 0.250 0.762 sum -0.589 10.669 -10.073 14.685 Atomic orbital electron populations 1.22671 0.82294 1.02313 0.99108 1.88058 1.18552 1.27540 1.95193 1.23084 0.95541 0.84841 0.99697 1.21207 0.90723 0.99415 0.87066 1.47311 1.67640 1.09160 1.09564 1.19357 0.97386 0.73104 0.97822 1.21538 0.97339 0.92375 1.46557 0.92238 1.24924 0.97452 0.96344 0.94999 1.69925 1.34336 1.01190 1.47381 0.86598 0.84533 0.77271 0.79282 1.20183 1.21221 1.20206 1.15826 0.77892 0.84827 0.80433 1.90777 1.62051 1.12632 1.83994 1.42774 1.68847 1.10353 1.10956 1.17359 0.95670 0.93476 0.89691 1.21091 0.99579 0.93720 0.95888 1.20501 1.00922 1.01093 0.96998 1.17470 0.95159 0.90150 0.88642 1.18952 1.01627 0.94279 0.99190 1.20671 0.95695 1.00847 0.95798 1.20255 0.96594 1.00125 0.93726 1.21867 1.02363 0.95748 0.97517 1.21425 0.86767 0.95634 0.96012 1.44550 1.24415 1.35497 1.34897 0.94774 0.94712 0.89944 0.93285 0.93371 0.89499 0.89406 0.92912 0.95707 0.92557 0.74546 0.84307 0.86550 0.85777 0.90769 0.91254 0.91355 0.90928 0.90894 0.92814 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.78 9.53 -35.23 -0.34 -7.12 16 3 C 0.05 0.77 6.28 37.16 0.23 1.01 16 4 C 0.14 2.65 5.81 -4.04 -0.02 2.62 16 5 N -0.60 -13.11 2.42 -180.80 -0.44 -13.55 16 6 C 0.24 5.90 4.79 -5.19 -0.02 5.88 16 7 C -0.54 -14.21 9.39 -34.44 -0.32 -14.53 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 11 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.71 15.52 8.12 -86.93 -0.71 14.81 16 16 O -0.61 -14.01 13.36 5.28 0.07 -13.94 16 17 N -0.68 -13.84 5.22 -14.21 -0.07 -13.91 16 18 C 0.13 2.51 6.30 -83.64 -0.53 1.98 16 19 C -0.08 -1.45 8.69 -39.45 -0.34 -1.79 16 20 C -0.17 -2.59 9.87 -39.37 -0.39 -2.98 16 21 C 0.19 2.64 6.48 -83.60 -0.54 2.10 16 22 C -0.14 -1.99 5.76 -104.45 -0.60 -2.59 16 23 C -0.11 -1.81 9.58 -39.33 -0.38 -2.19 16 24 C -0.07 -0.81 5.77 -28.00 -0.16 -0.97 16 25 C -0.14 -1.26 6.11 -26.58 -0.16 -1.42 16 26 C 0.13 1.13 7.11 -3.59 -0.03 1.10 16 27 N -0.76 -8.25 5.81 -58.02 -0.34 -8.59 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 34 H 0.09 1.59 7.42 -51.93 -0.39 1.21 16 35 H 0.05 1.38 7.11 -51.93 -0.37 1.02 16 36 H 0.03 0.62 6.30 -51.93 -0.33 0.30 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.42 8.53 6.52 -40.82 -0.27 8.26 16 39 H 0.14 2.65 6.22 -52.48 -0.33 2.32 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.40 3.52 8.86 -40.82 -0.36 3.16 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -30.86 389.30 -9.98 -40.84 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -7.50 Total: 12.27 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.96 Total: 6.24 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.11 Total: -59.98 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.27 Total: -21.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.86 -9.98 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591309803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.697 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds