Wall clock time and date at job start Tue Mar 31 2020 17:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00324 * 2 1 4 4 C 1.52999 * 109.47270 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47209 * 65.00281 * 4 3 2 6 6 C 1.34773 * 120.00342 * 179.97438 * 5 4 3 7 7 O 1.21594 * 119.99826 * 0.02562 * 6 5 4 8 8 C 1.47536 * 120.00396 * 179.97438 * 6 5 4 9 9 C 1.40350 * 120.47992 * 180.02562 * 8 6 5 10 10 C 1.36849 * 118.49998 * 180.02562 * 9 8 6 11 11 C 1.39404 * 119.37364 * 359.97438 * 10 9 8 12 12 N 1.38461 * 119.53589 * 179.97438 * 11 10 9 13 13 C 1.46843 * 111.00435 * 304.21280 * 12 11 10 14 14 C 1.53038 * 109.52415 * 174.16034 * 13 12 11 15 15 C 1.53116 * 109.28034 * 59.17999 * 14 13 12 16 16 C 1.53121 * 109.16058 * 302.34574 * 15 14 13 17 17 H 1.08997 * 109.53434 * 297.69454 * 16 15 14 18 18 C 1.50701 * 109.50138 * 177.59200 * 16 15 14 19 19 H 1.08002 * 119.99761 * 240.19217 * 18 16 15 20 20 C 1.37871 * 119.99694 * 60.47780 * 18 16 15 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 16 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 16 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47301 * 119.99669 * 22 20 18 25 25 H 1.48498 * 109.47430 * 239.99516 * 22 20 18 26 26 C 1.46851 * 110.99892 * 179.97438 * 12 11 10 27 27 N 1.32597 * 120.92677 * 0.26124 * 11 10 9 28 28 C 1.31678 * 121.63180 * 359.46982 * 27 11 10 29 29 H 1.09005 * 109.47318 * 299.99588 * 1 2 3 30 30 H 1.08994 * 109.47255 * 59.99704 * 1 2 3 31 31 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.00077 * 3 2 1 33 33 H 1.09000 * 109.46790 * 300.00339 * 3 2 1 34 34 H 1.08994 * 109.47121 * 304.99956 * 4 3 2 35 35 H 1.09004 * 109.46779 * 185.00372 * 4 3 2 36 36 H 0.97006 * 119.99768 * 359.97438 * 5 4 3 37 37 H 1.08008 * 120.75133 * 0.03377 * 9 8 6 38 38 H 1.07996 * 120.31700 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.46401 * 294.17923 * 13 12 11 40 40 H 1.09003 * 109.46079 * 54.14172 * 13 12 11 41 41 H 1.09007 * 109.50088 * 179.12496 * 14 13 12 42 42 H 1.09005 * 109.50208 * 299.23415 * 14 13 12 43 43 H 1.08998 * 109.52185 * 182.44141 * 15 14 13 44 44 H 1.08998 * 109.51986 * 62.24900 * 15 14 13 45 45 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.45689 * 65.82814 * 26 12 11 47 47 H 1.08994 * 109.46554 * 305.85895 * 26 12 11 48 48 H 1.08005 * 119.74155 * 180.24830 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 5.2883 0.3565 -1.4768 7 8 6.1072 0.6832 -0.6394 8 6 5.7316 -0.2686 -2.7375 9 6 7.0959 -0.4903 -2.9810 10 6 7.4619 -1.0724 -4.1642 11 6 6.4774 -1.4260 -5.0856 12 7 6.8440 -2.0146 -6.2840 13 6 7.8047 -1.1749 -7.0107 14 6 8.2967 -1.9194 -8.2540 15 6 7.1008 -2.2519 -9.1505 16 6 6.0930 -3.0861 -8.3550 17 1 6.5544 -4.0271 -8.0556 18 6 4.8856 -3.3678 -9.2117 19 1 3.9099 -3.0261 -8.8989 20 6 5.0257 -4.0667 -10.3918 21 7 6.2137 -4.4828 -10.7727 22 14 3.5279 -4.4227 -11.4499 23 1 2.3187 -3.8520 -10.8041 24 1 3.7108 -3.8083 -12.7894 25 1 3.3635 -5.8912 -11.5971 26 6 5.6648 -2.3083 -7.1085 27 7 5.1953 -1.2013 -4.8329 28 6 4.8002 -0.6484 -3.7050 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1764 0.0890 36 1 3.3223 0.3034 -1.9206 37 1 7.8401 -0.2080 -2.2509 38 1 8.5035 -1.2569 -4.3817 39 1 7.3204 -0.2460 -7.3116 40 1 8.6522 -0.9493 -6.3634 41 1 8.9981 -1.2896 -8.8015 42 1 8.7936 -2.8418 -7.9530 43 1 7.4413 -2.8201 -10.0161 44 1 6.6272 -1.3283 -9.4832 45 1 6.3121 -4.9749 -11.6027 46 1 5.1900 -1.3743 -7.4089 47 1 4.9583 -2.9057 -6.5322 48 1 3.7475 -0.4830 -3.5293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:52 Heat of formation + Delta-G solvation = -60.525459 kcal Electronic energy + Delta-G solvation = -28154.047809 eV Core-core repulsion = 24208.114067 eV Total energy + Delta-G solvation = -3945.933742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98780 -40.68571 -39.21251 -38.76631 -35.88491 -35.72862 -33.97523 -33.50221 -31.84037 -31.63081 -29.98140 -27.20795 -27.08175 -26.02548 -24.91200 -23.98914 -23.05510 -22.86776 -21.68288 -20.48904 -19.26650 -18.72368 -18.01888 -17.69486 -17.55210 -17.00634 -16.52831 -16.26614 -16.23612 -16.05107 -15.90237 -15.55845 -15.22964 -15.10285 -14.77457 -14.43927 -14.27646 -14.13626 -14.02061 -13.81068 -13.66027 -13.33740 -13.09671 -12.87153 -12.70240 -12.66576 -12.52523 -12.14412 -11.88505 -11.79588 -11.54867 -11.31718 -11.06177 -11.04854 -10.88925 -10.69993 -10.63321 -10.39982 -10.36483 -10.17443 -9.08862 -8.09029 -6.22255 -0.37126 0.29435 1.40680 1.42821 1.54131 1.76311 2.10999 2.40629 2.56821 2.81331 2.87297 3.18676 3.34049 3.72896 3.83117 3.92224 3.95202 4.06406 4.12954 4.16323 4.19716 4.37960 4.43150 4.53369 4.55387 4.59585 4.63957 4.64495 4.67742 4.76712 4.84067 4.86776 4.92306 4.95660 5.02956 5.07899 5.13438 5.30425 5.32750 5.38094 5.51646 5.63711 5.73575 6.00194 6.14389 6.19918 6.21386 6.38443 6.43210 6.87108 6.94185 7.12391 7.45462 8.96207 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.002520 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.170908 B =11106.924513 C =13079.320640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.713 5.713 6 C 0.574 3.426 7 O -0.577 6.577 8 C -0.238 4.238 9 C 0.007 3.993 10 C -0.195 4.195 11 C 0.331 3.669 12 N -0.485 5.485 13 C 0.070 3.930 14 C -0.111 4.111 15 C -0.107 4.107 16 C 0.048 3.952 17 H -0.002 1.002 18 C -0.533 4.533 19 H 0.049 0.951 20 C 0.016 3.984 21 N -0.914 5.914 22 Si 0.954 3.046 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.281 1.281 26 C 0.102 3.898 27 N -0.551 5.551 28 C 0.170 3.830 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.412 0.588 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.042 0.958 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.261 0.739 46 H 0.030 0.970 47 H 0.056 0.944 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 13.991 19.841 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.027 4.027 4 C -0.003 4.003 5 N -0.365 5.365 6 C 0.362 3.638 7 O -0.459 6.459 8 C -0.245 4.245 9 C -0.019 4.019 10 C -0.218 4.218 11 C 0.098 3.902 12 N -0.200 5.200 13 C -0.055 4.055 14 C -0.149 4.149 15 C -0.145 4.145 16 C 0.029 3.971 17 H 0.016 0.984 18 C -0.572 4.572 19 H 0.068 0.932 20 C -0.183 4.183 21 N -0.553 5.553 22 Si 0.779 3.221 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.207 1.207 26 C -0.025 4.025 27 N -0.266 5.266 28 C 0.010 3.990 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.249 0.751 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.060 0.940 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.846 13.263 19.688 24.229 hybrid contribution -1.067 0.169 -0.681 1.277 sum -5.913 13.432 19.007 24.013 Atomic orbital electron populations 1.22901 0.79376 1.03592 1.01121 1.87903 1.21488 1.28506 1.95698 1.22882 0.91345 0.85222 1.03208 1.21517 0.93539 0.99179 0.86070 1.45792 1.06711 1.62551 1.21431 1.17960 0.82684 0.77554 0.85626 1.90746 1.53880 1.53702 1.47526 1.20754 0.95858 1.10370 0.97523 1.21398 0.95216 0.90134 0.95202 1.21450 1.01244 1.04682 0.94390 1.20459 0.89326 0.87506 0.92877 1.58825 1.16356 1.40535 1.04295 1.22327 0.94574 0.93023 0.95558 1.21645 0.98041 1.00247 0.94977 1.21506 0.95564 0.97893 0.99568 1.18692 0.94378 0.93252 0.90744 0.98414 1.21455 0.94184 1.35463 1.06081 0.93226 1.25678 0.98467 0.95346 0.98808 1.70019 1.23402 1.38492 1.23399 0.85573 0.80068 0.77772 0.78649 1.19293 1.20426 1.20705 1.21804 0.89015 0.98401 0.93253 1.67795 1.18085 1.17750 1.22931 1.23106 1.00365 0.89122 0.86417 0.92769 0.92916 0.89370 0.89440 0.90892 0.91751 0.88903 0.75108 0.82406 0.81957 0.93978 0.87292 0.89620 0.92292 0.91834 0.95446 0.92983 0.95173 0.92579 0.80229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.00 10.65 -148.98 -1.59 -7.59 16 3 C 0.05 0.48 6.07 71.98 0.44 0.92 16 4 C 0.12 1.70 6.06 86.38 0.52 2.23 16 5 N -0.71 -12.43 5.45 -466.28 -2.54 -14.97 16 6 C 0.57 13.72 7.77 86.70 0.67 14.39 16 7 O -0.58 -17.26 16.41 -4.01 -0.07 -17.32 16 8 C -0.24 -5.82 5.89 -19.99 -0.12 -5.93 16 9 C 0.01 0.16 9.65 22.46 0.22 0.38 16 10 C -0.20 -5.01 9.10 22.22 0.20 -4.81 16 11 C 0.33 10.74 6.40 133.25 0.85 11.60 16 12 N -0.49 -17.80 4.66 -702.10 -3.27 -21.07 16 13 C 0.07 2.18 5.24 86.33 0.45 2.63 16 14 C -0.11 -3.94 6.09 30.65 0.19 -3.75 16 15 C -0.11 -4.97 5.03 30.67 0.15 -4.81 16 16 C 0.05 2.46 2.26 -11.49 -0.03 2.43 16 17 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 18 C -0.53 -29.76 8.56 25.60 0.22 -29.54 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.02 0.88 5.31 84.65 0.45 1.33 16 21 N -0.91 -52.54 11.37 21.45 0.24 -52.30 16 22 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.10 4.48 3.86 86.32 0.33 4.81 16 27 N -0.55 -17.97 8.64 -192.31 -1.66 -19.63 16 28 C 0.17 4.26 10.71 85.04 0.91 5.17 16 29 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.41 5.73 6.52 -92.70 -0.60 5.12 16 37 H 0.16 3.34 7.73 -2.91 -0.02 3.32 16 38 H 0.16 3.39 7.12 -2.91 -0.02 3.37 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 2.60 6.64 -2.39 -0.02 2.59 16 41 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.06 3.34 6.18 -2.39 -0.01 3.32 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 46 H 0.03 1.36 8.10 -2.39 -0.02 1.34 16 47 H 0.06 2.61 7.70 -2.39 -0.02 2.59 16 48 H 0.18 3.23 6.41 -2.91 -0.02 3.21 16 Total: -1.00 -71.05 387.21 0.21 -70.84 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.36 Total: 17.75 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.72 Total: -1.48 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -7.24 Total: -107.97 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.65 Total: -24.91 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -71.05 0.21 -70.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.311 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds