Wall clock time and date at job start Tue Mar 31 2020 17:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 117.00206 * 2 1 4 4 C 1.38740 * 120.05657 * 0.31516 * 3 2 1 5 5 C 1.38135 * 119.94448 * 180.25395 * 4 3 2 6 6 C 1.38270 * 120.05770 * 359.45575 * 5 4 3 7 7 C 1.50696 * 119.94540 * 180.27537 * 6 5 4 8 8 N 1.46500 * 109.47443 * 89.99557 * 7 6 5 9 9 C 1.34777 * 120.00526 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99410 * 354.92373 * 9 8 7 11 11 N 1.34776 * 120.00225 * 174.91904 * 9 8 7 12 12 C 1.47077 * 120.87959 * 184.71680 * 11 9 8 13 13 C 1.53694 * 108.27538 * 128.75640 * 12 11 9 14 14 N 1.46899 * 109.25762 * 54.08094 * 13 12 11 15 15 C 1.46909 * 111.00224 * 172.60766 * 14 13 12 16 16 C 1.50699 * 109.46739 * 294.30717 * 15 14 13 17 17 H 1.07993 * 120.00177 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99530 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47132 * 89.99895 * 20 18 16 22 22 H 1.48493 * 109.47230 * 210.00167 * 20 18 16 23 23 H 1.48503 * 109.47019 * 330.00005 * 20 18 16 24 24 C 1.46896 * 111.26977 * 296.75633 * 14 13 12 25 25 C 1.47084 * 120.88168 * 4.99776 * 11 9 8 26 26 C 1.38266 * 120.10717 * 0.24738 * 6 5 4 27 27 C 1.38138 * 120.05941 * 0.02562 * 26 6 5 28 28 H 1.08996 * 109.47342 * 60.00092 * 1 2 3 29 29 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46812 * 300.00360 * 1 2 3 31 31 H 1.08004 * 120.02694 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97355 * 179.72684 * 5 4 3 33 33 H 1.08999 * 109.47316 * 210.00007 * 7 6 5 34 34 H 1.09001 * 109.47277 * 329.99526 * 7 6 5 35 35 H 0.97003 * 119.99792 * 359.97438 * 8 7 6 36 36 H 1.08993 * 109.63127 * 248.52375 * 12 11 9 37 37 H 1.09003 * 109.63189 * 9.10904 * 12 11 9 38 38 H 1.09003 * 109.64618 * 294.07994 * 13 12 11 39 39 H 1.08997 * 109.42324 * 173.94765 * 13 12 11 40 40 H 1.08998 * 109.46510 * 54.30551 * 15 14 13 41 41 H 1.08993 * 109.46997 * 174.30066 * 15 14 13 42 42 H 0.96995 * 119.99501 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.49389 * 303.14500 * 24 14 13 44 44 H 1.09005 * 109.49371 * 183.06144 * 24 14 13 45 45 H 1.09003 * 109.62260 * 350.89790 * 25 11 9 46 46 H 1.08996 * 109.62466 * 111.47226 * 25 11 9 47 47 H 1.08001 * 119.96615 * 180.02562 * 26 6 5 48 48 H 1.08002 * 120.03084 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3751 0.0066 5 6 1.9211 3.6047 0.0013 6 6 3.3020 3.6757 0.0008 7 6 3.9862 5.0184 0.0012 8 7 4.2084 5.4529 1.3826 9 6 4.8105 6.6332 1.6293 10 8 5.2519 7.2944 0.7093 11 7 4.9232 7.0805 2.8956 12 6 5.4832 8.4106 3.1793 13 6 4.5059 9.1587 4.0998 14 7 4.2302 8.3357 5.2850 15 6 3.4405 9.0832 6.2729 16 6 4.2593 10.2304 6.8063 17 1 5.2657 10.3882 6.4477 18 6 3.7239 11.0779 7.7530 19 7 2.4985 10.8853 8.1901 20 14 4.7390 12.4995 8.4148 21 1 4.5152 13.7018 7.5724 22 1 4.3303 12.7912 9.8123 23 1 6.1784 12.1356 8.3857 24 6 3.5620 7.0800 4.9181 25 6 4.4951 6.2491 4.0309 26 6 4.0561 2.5168 0.0004 27 6 3.4314 1.2848 0.0000 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2130 2.3202 0.0122 32 1 1.3343 4.5114 0.0020 33 1 4.9439 4.9385 -0.5130 34 1 3.3580 5.7465 -0.5120 35 1 3.9221 4.8910 2.1197 36 1 6.4482 8.3036 3.6746 37 1 5.6059 8.9626 2.2475 38 1 3.5750 9.3517 3.5665 39 1 4.9510 10.1043 4.4092 40 1 2.5383 9.4700 5.7992 41 1 3.1647 8.4210 7.0936 42 1 2.1221 11.4813 8.8563 43 1 2.6444 7.3020 4.3735 44 1 3.3228 6.5181 5.8210 45 1 3.9643 5.3714 3.6622 46 1 5.3670 5.9383 4.6064 47 1 5.1346 2.5750 0.0004 48 1 4.0209 0.3798 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601257241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:15 Heat of formation + Delta-G solvation = -21.337928 kcal Electronic energy + Delta-G solvation = -27988.415384 eV Core-core repulsion = 24044.180941 eV Total energy + Delta-G solvation = -3944.234443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.64261 -40.10759 -38.23899 -37.49397 -34.76714 -34.35805 -32.40593 -31.54868 -31.18135 -30.41164 -28.37262 -27.82132 -25.89262 -25.11248 -23.17369 -23.02683 -22.16130 -21.55240 -20.69487 -19.32907 -18.58919 -18.00431 -16.70966 -16.48201 -16.21620 -16.12571 -15.61968 -15.44807 -14.94347 -14.64157 -14.47746 -14.30779 -14.26589 -13.93349 -13.88901 -13.70325 -13.45837 -13.21620 -13.01070 -12.48812 -12.32494 -12.20511 -11.98038 -11.81832 -11.48218 -11.28920 -11.20631 -11.12502 -10.82339 -10.74499 -10.61686 -10.50309 -10.00622 -9.84943 -9.40232 -9.27386 -9.13514 -8.57174 -8.48564 -8.30386 -7.32083 -6.06372 -4.08008 0.90621 0.96441 2.76874 2.83790 3.30521 3.32878 3.36912 3.39438 3.41230 4.03564 4.36444 4.39120 4.42389 4.48741 4.65056 4.70572 4.79365 4.94569 4.98262 5.02869 5.20409 5.22882 5.28729 5.36469 5.39989 5.42510 5.55281 5.66059 5.67474 5.84302 5.84482 5.93336 5.95382 6.05390 6.20240 6.25408 6.33084 6.42527 6.45674 6.56972 6.70719 6.95130 7.08221 7.22213 7.28268 7.74554 8.00623 8.03582 8.12876 8.47824 8.70010 8.99421 9.56573 11.04472 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.002067 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.972403 B =13543.148669 C =14522.694780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.132 3.868 4 C -0.210 4.210 5 C -0.058 4.058 6 C -0.144 4.144 7 C 0.185 3.815 8 N -0.747 5.747 9 C 0.707 3.293 10 O -0.597 6.597 11 N -0.625 5.625 12 C 0.133 3.867 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.041 3.959 25 C 0.119 3.881 26 C -0.059 4.059 27 C -0.154 4.154 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.024 0.976 39 H 0.097 0.903 40 H -0.009 1.009 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.132 0.868 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -21.302 -16.891 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.087 3.913 4 C -0.229 4.229 5 C -0.076 4.076 6 C -0.145 4.145 7 C 0.061 3.939 8 N -0.406 5.406 9 C 0.409 3.591 10 O -0.476 6.476 11 N -0.362 5.362 12 C 0.010 3.990 13 C -0.078 4.078 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.547 4.547 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.089 4.089 25 C -0.005 4.005 26 C -0.078 4.078 27 C -0.173 4.173 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.042 0.958 39 H 0.115 0.885 40 H 0.008 0.992 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.150 0.850 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.921 -21.032 -17.226 27.254 hybrid contribution -0.962 0.768 0.562 1.353 sum -2.883 -20.264 -16.664 26.393 Atomic orbital electron populations 1.23088 0.78144 1.04097 1.01548 1.86075 1.21603 1.26965 1.88502 1.19118 0.92446 0.84194 0.95541 1.21257 1.00220 0.92229 1.09178 1.20932 0.93879 0.97310 0.95522 1.19835 0.93705 0.94859 1.06099 1.19901 0.99907 0.91257 0.82795 1.45358 1.65545 1.21298 1.08409 1.15833 0.78909 0.81222 0.83162 1.90889 1.54817 1.58606 1.43294 1.47411 1.66157 1.18820 1.03807 1.21831 0.96626 0.81110 0.99393 1.22455 0.97413 0.97508 0.90468 1.62075 1.47891 1.04601 1.11434 1.19723 0.91382 0.92780 0.89209 1.21146 1.00416 1.10648 1.22522 0.91738 1.25000 0.95069 0.98056 0.96511 1.69956 1.14526 1.38463 1.30847 0.86486 0.80501 0.82289 0.78082 1.20718 1.21287 1.19712 1.22376 0.94546 0.93715 0.98240 1.21763 0.98832 0.92574 0.87331 1.20942 1.00093 0.90798 0.95929 1.20443 0.91354 0.98736 1.06754 0.92536 0.88132 0.92436 0.85269 0.85398 0.90826 0.91066 0.76746 0.91156 0.89361 0.95758 0.88497 0.99157 0.95085 0.92898 0.95580 0.90168 0.91295 0.90632 0.84966 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.65 10.50 -19.41 -0.20 -2.85 16 3 C 0.13 1.15 6.69 -39.21 -0.26 0.88 16 4 C -0.21 -1.65 9.04 -39.43 -0.36 -2.01 16 5 C -0.06 -0.48 9.69 -39.61 -0.38 -0.86 16 6 C -0.14 -1.25 5.25 -104.60 -0.55 -1.79 16 7 C 0.19 1.89 5.80 -5.20 -0.03 1.86 16 8 N -0.75 -8.78 5.46 -66.42 -0.36 -9.14 16 9 C 0.71 11.04 8.31 -86.92 -0.72 10.32 16 10 O -0.60 -11.33 15.83 5.28 0.08 -11.24 16 11 N -0.62 -9.66 3.00 -177.91 -0.53 -10.20 16 12 C 0.13 2.23 6.61 -3.37 -0.02 2.20 16 13 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 14 N -0.53 -11.06 4.62 -235.47 -1.09 -12.15 16 15 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 16 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 17 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 20 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 24 C 0.04 0.69 5.62 -3.70 -0.02 0.66 16 25 C 0.12 1.60 6.59 -3.60 -0.02 1.58 16 26 C -0.06 -0.47 9.69 -39.61 -0.38 -0.86 16 27 C -0.15 -1.27 9.99 -39.43 -0.39 -1.66 16 28 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 31 H 0.13 0.78 6.30 -52.48 -0.33 0.45 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.40 3.99 5.96 -40.82 -0.24 3.74 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 40 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 41 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 45 H 0.07 0.72 5.63 -51.93 -0.29 0.43 16 46 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 48 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -33.18 388.26 -10.48 -43.66 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.36 Total: 0.82 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.59 Total: 4.51 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -1.25 Total: -57.08 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.12 Total: -14.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.18 -10.48 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.325 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds