Wall clock time and date at job start Tue Mar 31 2020 17:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 117.00206 * 2 1 4 4 C 1.38740 * 120.05657 * 0.31516 * 3 2 1 5 5 C 1.38135 * 119.94448 * 180.25395 * 4 3 2 6 6 C 1.38270 * 120.05770 * 359.45575 * 5 4 3 7 7 C 1.50696 * 119.94540 * 180.27537 * 6 5 4 8 8 N 1.46500 * 109.47443 * 89.99557 * 7 6 5 9 9 C 1.34777 * 120.00526 * 179.97438 * 8 7 6 10 10 O 1.21592 * 119.99410 * 354.92373 * 9 8 7 11 11 N 1.34776 * 120.00225 * 174.91904 * 9 8 7 12 12 C 1.47077 * 120.87959 * 184.71680 * 11 9 8 13 13 C 1.53694 * 108.27538 * 128.75640 * 12 11 9 14 14 N 1.46899 * 109.25762 * 54.08094 * 13 12 11 15 15 C 1.46909 * 111.00224 * 172.60766 * 14 13 12 16 16 C 1.50699 * 109.46739 * 294.30717 * 15 14 13 17 17 H 1.07993 * 120.00177 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99530 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47132 * 89.99895 * 20 18 16 22 22 H 1.48493 * 109.47230 * 210.00167 * 20 18 16 23 23 H 1.48503 * 109.47019 * 330.00005 * 20 18 16 24 24 C 1.46896 * 111.26977 * 296.75633 * 14 13 12 25 25 C 1.47084 * 120.88168 * 4.99776 * 11 9 8 26 26 C 1.38266 * 120.10717 * 0.24738 * 6 5 4 27 27 C 1.38138 * 120.05941 * 0.02562 * 26 6 5 28 28 H 1.08996 * 109.47342 * 60.00092 * 1 2 3 29 29 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46812 * 300.00360 * 1 2 3 31 31 H 1.08004 * 120.02694 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97355 * 179.72684 * 5 4 3 33 33 H 1.08999 * 109.47316 * 210.00007 * 7 6 5 34 34 H 1.09001 * 109.47277 * 329.99526 * 7 6 5 35 35 H 0.97003 * 119.99792 * 359.97438 * 8 7 6 36 36 H 1.08993 * 109.63127 * 248.52375 * 12 11 9 37 37 H 1.09003 * 109.63189 * 9.10904 * 12 11 9 38 38 H 1.09003 * 109.64618 * 294.07994 * 13 12 11 39 39 H 1.08997 * 109.42324 * 173.94765 * 13 12 11 40 40 H 1.08998 * 109.46510 * 54.30551 * 15 14 13 41 41 H 1.08993 * 109.46997 * 174.30066 * 15 14 13 42 42 H 0.96995 * 119.99501 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.49389 * 303.14500 * 24 14 13 44 44 H 1.09005 * 109.49371 * 183.06144 * 24 14 13 45 45 H 1.09003 * 109.62260 * 350.89790 * 25 11 9 46 46 H 1.08996 * 109.62466 * 111.47226 * 25 11 9 47 47 H 1.08001 * 119.96615 * 180.02562 * 26 6 5 48 48 H 1.08002 * 120.03084 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3751 0.0066 5 6 1.9211 3.6047 0.0013 6 6 3.3020 3.6757 0.0008 7 6 3.9862 5.0184 0.0012 8 7 4.2084 5.4529 1.3826 9 6 4.8105 6.6332 1.6293 10 8 5.2519 7.2944 0.7093 11 7 4.9232 7.0805 2.8956 12 6 5.4832 8.4106 3.1793 13 6 4.5059 9.1587 4.0998 14 7 4.2302 8.3357 5.2850 15 6 3.4405 9.0832 6.2729 16 6 4.2593 10.2304 6.8063 17 1 5.2657 10.3882 6.4477 18 6 3.7239 11.0779 7.7530 19 7 2.4985 10.8853 8.1901 20 14 4.7390 12.4995 8.4148 21 1 4.5152 13.7018 7.5724 22 1 4.3303 12.7912 9.8123 23 1 6.1784 12.1356 8.3857 24 6 3.5620 7.0800 4.9181 25 6 4.4951 6.2491 4.0309 26 6 4.0561 2.5168 0.0004 27 6 3.4314 1.2848 0.0000 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2130 2.3202 0.0122 32 1 1.3343 4.5114 0.0020 33 1 4.9439 4.9385 -0.5130 34 1 3.3580 5.7465 -0.5120 35 1 3.9221 4.8910 2.1197 36 1 6.4482 8.3036 3.6746 37 1 5.6059 8.9626 2.2475 38 1 3.5750 9.3517 3.5665 39 1 4.9510 10.1043 4.4092 40 1 2.5383 9.4700 5.7992 41 1 3.1647 8.4210 7.0936 42 1 2.1221 11.4813 8.8563 43 1 2.6444 7.3020 4.3735 44 1 3.3228 6.5181 5.8210 45 1 3.9643 5.3714 3.6622 46 1 5.3670 5.9383 4.6064 47 1 5.1346 2.5750 0.0004 48 1 4.0209 0.3798 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601257241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:14 Heat of formation + Delta-G solvation = -43.573910 kcal Electronic energy + Delta-G solvation = -27989.379608 eV Core-core repulsion = 24044.180941 eV Total energy + Delta-G solvation = -3945.198668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53403 -41.02736 -39.24569 -38.58595 -35.97751 -35.75398 -34.36105 -32.35415 -32.06802 -31.48519 -29.91538 -28.47363 -27.31114 -26.23753 -24.52240 -23.91046 -23.62559 -22.36377 -22.03649 -20.56403 -19.31183 -19.05157 -18.48919 -17.44178 -17.31558 -16.80549 -16.64923 -16.58783 -16.31318 -16.00146 -15.70695 -15.38426 -15.31363 -15.19520 -15.01368 -14.75165 -14.53672 -14.32135 -14.02959 -13.63226 -13.52495 -13.37972 -13.07111 -12.82185 -12.74053 -12.58293 -12.49958 -12.37560 -12.30387 -12.14671 -11.99628 -11.75654 -11.73895 -11.38066 -11.16591 -10.61553 -10.26315 -9.99034 -9.58544 -9.19239 -9.03405 -8.20338 -6.29889 0.26144 0.36680 1.43119 1.43634 1.55413 1.66490 2.10575 2.36091 2.41172 2.67313 3.03905 3.12204 3.24077 3.70414 3.80855 3.93655 3.95447 4.06419 4.15629 4.20285 4.26373 4.37320 4.39151 4.40805 4.44681 4.56332 4.61021 4.70559 4.72543 4.76070 4.77455 4.86182 4.95835 5.02665 5.06790 5.17896 5.21922 5.24414 5.33987 5.44506 5.46000 5.61489 5.64675 5.76046 5.92693 6.04085 6.26664 6.41072 6.58795 6.85776 6.93009 7.39805 7.50890 8.90740 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.002067 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.972403 B =13543.148669 C =14522.694780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.123 3.877 4 C -0.213 4.213 5 C -0.063 4.063 6 C -0.149 4.149 7 C 0.188 3.812 8 N -0.731 5.731 9 C 0.705 3.295 10 O -0.633 6.633 11 N -0.629 5.629 12 C 0.145 3.855 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.209 3.791 16 C -0.522 4.522 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.038 3.962 25 C 0.128 3.872 26 C -0.057 4.057 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.010 0.990 39 H 0.080 0.920 40 H -0.042 1.042 41 H 0.011 0.989 42 H 0.264 0.736 43 H 0.018 0.982 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.145 0.855 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -22.657 -17.275 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.232 4.232 5 C -0.081 4.081 6 C -0.149 4.149 7 C 0.065 3.935 8 N -0.389 5.389 9 C 0.407 3.593 10 O -0.515 6.515 11 N -0.365 5.365 12 C 0.022 3.978 13 C -0.072 4.072 14 N -0.263 5.263 15 C 0.083 3.917 16 C -0.561 4.561 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.187 1.187 24 C -0.091 4.091 25 C 0.005 3.995 26 C -0.076 4.076 27 C -0.182 4.182 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.028 0.972 39 H 0.099 0.901 40 H -0.024 1.024 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.163 0.837 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.345 -22.443 -17.620 28.564 hybrid contribution -1.236 1.086 0.632 1.762 sum -2.581 -21.357 -16.988 27.411 Atomic orbital electron populations 1.23341 0.76487 1.05577 1.02249 1.86055 1.23420 1.26962 1.88425 1.19336 0.92851 0.84620 0.95446 1.21437 1.01145 0.91809 1.08772 1.21063 0.93865 0.97816 0.95370 1.19687 0.93863 0.94101 1.07299 1.19915 0.99899 0.91958 0.81709 1.45281 1.64100 1.20005 1.09552 1.15961 0.78891 0.81898 0.82566 1.90866 1.56384 1.59912 1.44292 1.47417 1.66160 1.18512 1.04458 1.21590 0.96003 0.81724 0.98496 1.22375 0.97312 0.97334 0.90206 1.61998 1.47316 1.05459 1.11502 1.19373 0.90463 0.92373 0.89519 1.21472 1.00628 1.11383 1.22592 0.91594 1.25906 0.96166 1.00824 0.96805 1.70080 1.16200 1.39701 1.31512 0.85390 0.79134 0.78793 0.77355 1.20074 1.20877 1.18736 1.22515 0.94944 0.92294 0.99345 1.21823 0.98853 0.92537 0.86290 1.21071 1.00751 0.90451 0.95309 1.20642 0.91581 0.99216 1.06788 0.91677 0.86408 0.91838 0.83661 0.84769 0.90991 0.91709 0.75543 0.90281 0.89555 0.97219 0.90140 1.02427 0.97103 0.92731 0.96326 0.89323 0.87602 0.89476 0.83725 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.08 10.50 -92.36 -0.97 -6.05 16 3 C 0.12 1.94 6.69 22.51 0.15 2.09 16 4 C -0.21 -2.98 9.04 22.37 0.20 -2.78 16 5 C -0.06 -0.93 9.69 22.25 0.22 -0.71 16 6 C -0.15 -2.31 5.25 -19.85 -0.10 -2.42 16 7 C 0.19 3.58 5.80 85.63 0.50 4.07 16 8 N -0.73 -15.68 5.46 -482.30 -2.63 -18.32 16 9 C 0.71 20.97 8.31 179.05 1.49 22.46 16 10 O -0.63 -23.53 15.83 -4.01 -0.06 -23.60 16 11 N -0.63 -18.45 3.00 -835.04 -2.51 -20.96 16 12 C 0.15 4.76 6.61 86.50 0.57 5.33 16 13 C 0.06 2.23 5.47 86.54 0.47 2.70 16 14 N -0.54 -22.37 4.62 -898.89 -4.15 -26.52 16 15 C 0.21 10.89 4.72 85.55 0.40 11.30 16 16 C -0.52 -29.05 8.41 25.60 0.22 -28.83 16 17 H 0.07 3.57 7.13 -2.91 -0.02 3.55 16 18 C 0.00 0.06 5.46 84.66 0.46 0.52 16 19 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 20 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.04 1.24 5.62 86.38 0.49 1.73 16 25 C 0.13 3.14 6.59 86.35 0.57 3.71 16 26 C -0.06 -0.81 9.69 22.25 0.22 -0.59 16 27 C -0.16 -2.43 9.99 22.36 0.22 -2.20 16 28 H 0.06 0.39 7.68 -2.39 -0.02 0.37 16 29 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.41 7.65 -2.38 -0.02 0.39 16 31 H 0.15 1.45 6.30 -2.91 -0.02 1.44 16 32 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 35 H 0.41 6.99 5.96 -92.71 -0.55 6.44 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 2.89 7.09 -2.39 -0.02 2.87 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 3.38 6.67 -2.39 -0.02 3.36 16 40 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 41 H 0.01 0.60 7.97 -2.39 -0.02 0.58 16 42 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 2.74 7.99 -2.38 -0.02 2.72 16 45 H 0.11 1.84 5.63 -2.39 -0.01 1.82 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -72.12 388.26 -0.42 -72.54 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.41 Total: 14.78 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 7.18 Total: 17.63 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -9.01 Total: -121.22 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.03 Total: -29.65 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.12 -0.42 -72.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.971 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds