Wall clock time and date at job start Tue Mar 31 2020 17:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99815 * 2 1 4 4 C 1.38751 * 120.05618 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94156 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05722 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11036 * 0.02562 * 6 5 4 8 8 C 1.38161 * 120.05613 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.02803 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47608 * 148.37956 * 9 8 7 11 11 N 1.46891 * 109.47187 * 28.37524 * 9 8 7 12 12 C 1.50707 * 109.46855 * 268.37445 * 9 8 7 13 13 O 1.21277 * 119.99594 * 72.75541 * 12 9 8 14 14 N 1.34777 * 120.00052 * 252.75128 * 12 9 8 15 15 C 1.47073 * 120.87938 * 4.59669 * 14 12 9 16 16 C 1.53698 * 108.27539 * 128.75529 * 15 14 12 17 17 N 1.46898 * 109.25866 * 54.08144 * 16 15 14 18 18 C 1.46895 * 111.00249 * 172.61189 * 17 16 15 19 19 C 1.50696 * 109.47013 * 294.29833 * 18 17 16 20 20 H 1.08002 * 120.00091 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00479 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00190 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99844 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47127 * 89.99510 * 23 21 19 25 25 H 1.48491 * 109.47136 * 209.99965 * 23 21 19 26 26 H 1.48506 * 109.47001 * 329.99602 * 23 21 19 27 27 C 1.46902 * 111.26704 * 296.75715 * 17 16 15 28 28 C 1.47073 * 120.87775 * 184.87377 * 14 12 9 29 29 H 1.08998 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46958 * 299.99601 * 1 2 3 31 31 H 1.09001 * 109.47109 * 59.99838 * 1 2 3 32 32 H 1.07994 * 120.02632 * 359.95576 * 4 3 2 33 33 H 1.08000 * 119.97061 * 179.72632 * 5 4 3 34 34 H 1.07999 * 119.93948 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.97179 * 179.97438 * 7 6 5 36 36 H 1.00901 * 111.00369 * 300.00331 * 11 9 8 37 37 H 1.00899 * 111.00164 * 63.95562 * 11 9 8 38 38 H 1.09005 * 109.62936 * 248.51774 * 15 14 12 39 39 H 1.09001 * 109.63453 * 9.10089 * 15 14 12 40 40 H 1.08995 * 109.64586 * 294.07497 * 16 15 14 41 41 H 1.09000 * 109.42486 * 173.94447 * 16 15 14 42 42 H 1.08997 * 109.47562 * 54.29772 * 18 17 16 43 43 H 1.09001 * 109.47368 * 174.29995 * 18 17 16 44 44 H 0.97001 * 119.99455 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.49410 * 303.14279 * 27 17 16 46 46 H 1.08999 * 109.51657 * 183.07937 * 27 17 16 47 47 H 1.08996 * 109.63212 * 350.89726 * 28 14 12 48 48 H 1.08999 * 109.62827 * 111.47731 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0016 7 6 4.0560 2.5171 0.0011 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0222 -0.0006 10 1 3.7191 -0.7603 0.5379 11 7 5.5423 0.2766 0.6572 12 6 4.4935 -0.4198 -1.4213 13 8 5.2674 0.1942 -2.1249 14 7 3.8481 -1.4973 -1.9100 15 6 2.8319 -2.1961 -1.1086 16 6 1.5605 -2.3384 -1.9604 17 7 1.9005 -2.9871 -3.2338 18 6 0.6900 -3.3010 -4.0045 19 6 -0.1182 -4.3391 -3.2695 20 1 0.2321 -4.7266 -2.3242 21 6 -1.3055 -4.7936 -3.8033 22 7 -2.0105 -5.6999 -3.1621 23 14 -1.9119 -4.1230 -5.4379 24 1 -1.3816 -4.9602 -6.5438 25 1 -3.3964 -4.1505 -5.4641 26 1 -1.4398 -2.7249 -5.6052 27 6 2.8267 -2.1624 -4.0213 28 6 4.1456 -2.0092 -3.2563 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3203 0.0002 33 1 1.3340 4.5114 -0.0030 34 1 3.7922 4.6381 0.0016 35 1 5.1344 2.5752 0.0011 36 1 6.0574 0.9988 0.1763 37 1 5.4116 0.5121 1.6295 38 1 3.2011 -3.1828 -0.8288 39 1 2.6106 -1.6170 -0.2120 40 1 1.1380 -1.3528 -2.1557 41 1 0.8319 -2.9474 -1.4253 42 1 0.0936 -2.3972 -4.1286 43 1 0.9726 -3.6871 -4.9839 44 1 -2.8460 -6.0193 -3.5375 45 1 2.3865 -1.1792 -4.1879 46 1 3.0165 -2.6432 -4.9809 47 1 4.7933 -1.3064 -3.7803 48 1 4.6387 -2.9781 -3.1789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602603624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:43 Heat of formation + Delta-G solvation = -17.018887 kcal Electronic energy + Delta-G solvation = -30456.552094 eV Core-core repulsion = 26512.504939 eV Total energy + Delta-G solvation = -3944.047155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91611 -39.58595 -38.00779 -37.28262 -34.99414 -34.41464 -32.40453 -30.83735 -30.59030 -30.38270 -28.75023 -27.35601 -26.61291 -25.21899 -23.28089 -22.31655 -22.24933 -21.35009 -20.37714 -18.66108 -18.26067 -17.69440 -16.85069 -16.41000 -16.24842 -15.93832 -15.71271 -15.25353 -14.82281 -14.63195 -14.55965 -14.44403 -14.17161 -13.96405 -13.83111 -13.55658 -13.41975 -12.93483 -12.63507 -12.54045 -12.42909 -12.17521 -11.90120 -11.60548 -11.49262 -11.28206 -11.23178 -11.14301 -10.91823 -10.73807 -10.56381 -10.33083 -9.93710 -9.87984 -9.35308 -9.07879 -8.98711 -8.62958 -8.42034 -8.32779 -7.42544 -6.11627 -4.09189 1.00327 1.20634 2.73677 3.06556 3.13831 3.23553 3.31363 3.33349 3.54392 4.36231 4.39500 4.46677 4.59950 4.67767 4.71689 4.78595 4.92528 5.01790 5.11637 5.14463 5.20707 5.25908 5.35804 5.41714 5.43600 5.55780 5.63433 5.67489 5.69454 5.80827 5.88587 6.03260 6.09200 6.12455 6.22735 6.26013 6.43887 6.48714 6.51249 6.66510 6.78141 6.82029 6.92756 7.17712 7.18600 7.52645 7.59815 7.84340 7.97369 8.32472 8.58684 8.96121 9.50373 11.01102 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.003799 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.691130 B = 7368.357507 C = 8323.191448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.144 3.856 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.158 4.158 7 C -0.069 4.069 8 C -0.152 4.152 9 C 0.121 3.879 10 H 0.115 0.885 11 N -0.824 5.824 12 C 0.534 3.466 13 O -0.549 6.549 14 N -0.600 5.600 15 C 0.104 3.896 16 C 0.058 3.942 17 N -0.527 5.527 18 C 0.163 3.837 19 C -0.509 4.509 20 H 0.082 0.918 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.873 3.127 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.269 1.269 27 C 0.040 3.960 28 C 0.118 3.882 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.349 0.651 37 H 0.350 0.650 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.026 0.974 41 H 0.098 0.902 42 H -0.013 1.013 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.025 0.975 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.553 17.087 9.398 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.097 3.903 4 C -0.226 4.226 5 C -0.096 4.096 6 C -0.176 4.176 7 C -0.088 4.088 8 C -0.155 4.155 9 C 0.006 3.994 10 H 0.133 0.867 11 N -0.356 5.356 12 C 0.321 3.679 13 O -0.427 6.427 14 N -0.333 5.333 15 C -0.018 4.018 16 C -0.071 4.071 17 N -0.252 5.252 18 C 0.037 3.963 19 C -0.548 4.548 20 H 0.100 0.900 21 C -0.131 4.131 22 N -0.538 5.538 23 Si 0.700 3.300 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.090 4.090 28 C -0.004 4.004 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.005 0.995 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.289 15.875 8.927 20.445 hybrid contribution -1.717 2.118 -1.053 2.923 sum 7.572 17.993 7.874 21.049 Atomic orbital electron populations 1.23190 0.77585 1.05182 1.01126 1.86118 1.22003 1.25840 1.87976 1.18873 0.91493 0.84964 0.94965 1.21274 1.00300 0.92270 1.08730 1.20979 0.94666 0.97052 0.96880 1.20991 0.93920 0.98205 1.04506 1.20765 0.99937 0.91055 0.97030 1.19759 0.91127 0.96116 1.08541 1.20250 0.90041 0.95065 0.94027 0.86714 1.58685 1.17060 1.53164 1.06708 1.20118 0.79820 0.79630 0.88312 1.90624 1.37304 1.54771 1.59977 1.48123 1.39481 1.28779 1.16932 1.22320 0.87935 0.97135 0.94424 1.22383 0.95707 0.97199 0.91781 1.61889 1.16549 1.42313 1.04438 1.20165 0.86641 0.95525 0.94009 1.21008 1.04141 1.21337 1.08284 0.90015 1.24877 0.96494 0.94726 0.97049 1.69889 1.15002 1.29907 1.38967 0.86905 0.78086 0.79978 0.85039 1.20083 1.21217 1.19400 1.22433 0.93467 0.95890 0.97161 1.21722 0.97096 0.99440 0.82166 0.87068 0.92667 0.92519 0.85146 0.85770 0.85804 0.85510 0.83494 0.83642 0.90871 0.88402 0.95558 0.88356 0.99548 0.95720 0.92636 0.95705 0.90176 0.89475 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.38 101.05 0.95 1.19 16 2 O -0.31 -3.70 5.97 -19.44 -0.12 -3.82 16 3 C 0.14 1.75 6.66 -39.22 -0.26 1.49 16 4 C -0.21 -2.21 9.04 -39.43 -0.36 -2.56 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 6 C -0.16 -1.53 10.04 -39.56 -0.40 -1.93 16 7 C -0.07 -0.75 9.28 -39.61 -0.37 -1.12 16 8 C -0.15 -1.86 5.02 -104.47 -0.52 -2.39 16 9 C 0.12 1.54 2.82 -70.02 -0.20 1.34 16 10 H 0.12 1.42 5.30 -51.93 -0.28 1.15 16 11 N -0.82 -8.88 8.86 -6.65 -0.06 -8.94 16 12 C 0.53 8.55 6.71 -10.98 -0.07 8.48 16 13 O -0.55 -10.15 16.12 5.56 0.09 -10.06 16 14 N -0.60 -9.59 3.00 -172.19 -0.52 -10.11 16 15 C 0.10 1.59 5.95 -3.37 -0.02 1.57 16 16 C 0.06 1.04 5.07 -3.46 -0.02 1.03 16 17 N -0.53 -10.66 4.62 -235.47 -1.09 -11.75 16 18 C 0.16 3.82 3.79 -4.98 -0.02 3.80 16 19 C -0.51 -13.78 8.96 -34.44 -0.31 -14.09 16 20 H 0.08 2.39 7.37 -52.49 -0.39 2.00 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 23 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 27 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 28 C 0.12 1.90 6.61 -3.60 -0.02 1.88 16 29 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 32 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.19 6.34 -52.49 -0.33 0.86 16 36 H 0.35 3.73 6.86 -39.29 -0.27 3.46 16 37 H 0.35 2.88 9.06 -39.29 -0.36 2.53 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.32 3.00 -51.93 -0.16 1.16 16 40 H 0.03 0.48 7.20 -51.93 -0.37 0.10 16 41 H 0.10 1.91 6.67 -51.93 -0.35 1.56 16 42 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 43 H 0.02 0.59 7.40 -51.93 -0.38 0.20 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 47 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -32.50 371.26 -8.99 -41.50 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.86 Total: 6.99 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.14 Total: 0.09 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.89 Total: -56.54 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.03 Total: -13.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.50 -8.99 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.477 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds