Wall clock time and date at job start Tue Mar 31 2020 17:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99815 * 2 1 4 4 C 1.38751 * 120.05618 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94156 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05722 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11036 * 0.02562 * 6 5 4 8 8 C 1.38161 * 120.05613 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.02803 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47608 * 148.37956 * 9 8 7 11 11 N 1.46891 * 109.47187 * 28.37524 * 9 8 7 12 12 C 1.50707 * 109.46855 * 268.37445 * 9 8 7 13 13 O 1.21277 * 119.99594 * 72.75541 * 12 9 8 14 14 N 1.34777 * 120.00052 * 252.75128 * 12 9 8 15 15 C 1.47073 * 120.87938 * 4.59669 * 14 12 9 16 16 C 1.53698 * 108.27539 * 128.75529 * 15 14 12 17 17 N 1.46898 * 109.25866 * 54.08144 * 16 15 14 18 18 C 1.46895 * 111.00249 * 172.61189 * 17 16 15 19 19 C 1.50696 * 109.47013 * 294.29833 * 18 17 16 20 20 H 1.08002 * 120.00091 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00479 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00190 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99844 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47127 * 89.99510 * 23 21 19 25 25 H 1.48491 * 109.47136 * 209.99965 * 23 21 19 26 26 H 1.48506 * 109.47001 * 329.99602 * 23 21 19 27 27 C 1.46902 * 111.26704 * 296.75715 * 17 16 15 28 28 C 1.47073 * 120.87775 * 184.87377 * 14 12 9 29 29 H 1.08998 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46958 * 299.99601 * 1 2 3 31 31 H 1.09001 * 109.47109 * 59.99838 * 1 2 3 32 32 H 1.07994 * 120.02632 * 359.95576 * 4 3 2 33 33 H 1.08000 * 119.97061 * 179.72632 * 5 4 3 34 34 H 1.07999 * 119.93948 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.97179 * 179.97438 * 7 6 5 36 36 H 1.00901 * 111.00369 * 300.00331 * 11 9 8 37 37 H 1.00899 * 111.00164 * 63.95562 * 11 9 8 38 38 H 1.09005 * 109.62936 * 248.51774 * 15 14 12 39 39 H 1.09001 * 109.63453 * 9.10089 * 15 14 12 40 40 H 1.08995 * 109.64586 * 294.07497 * 16 15 14 41 41 H 1.09000 * 109.42486 * 173.94447 * 16 15 14 42 42 H 1.08997 * 109.47562 * 54.29772 * 18 17 16 43 43 H 1.09001 * 109.47368 * 174.29995 * 18 17 16 44 44 H 0.97001 * 119.99455 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.49410 * 303.14279 * 27 17 16 46 46 H 1.08999 * 109.51657 * 183.07937 * 27 17 16 47 47 H 1.08996 * 109.63212 * 350.89726 * 28 14 12 48 48 H 1.08999 * 109.62827 * 111.47731 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0016 7 6 4.0560 2.5171 0.0011 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0222 -0.0006 10 1 3.7191 -0.7603 0.5379 11 7 5.5423 0.2766 0.6572 12 6 4.4935 -0.4198 -1.4213 13 8 5.2674 0.1942 -2.1249 14 7 3.8481 -1.4973 -1.9100 15 6 2.8319 -2.1961 -1.1086 16 6 1.5605 -2.3384 -1.9604 17 7 1.9005 -2.9871 -3.2338 18 6 0.6900 -3.3010 -4.0045 19 6 -0.1182 -4.3391 -3.2695 20 1 0.2321 -4.7266 -2.3242 21 6 -1.3055 -4.7936 -3.8033 22 7 -2.0105 -5.6999 -3.1621 23 14 -1.9119 -4.1230 -5.4379 24 1 -1.3816 -4.9602 -6.5438 25 1 -3.3964 -4.1505 -5.4641 26 1 -1.4398 -2.7249 -5.6052 27 6 2.8267 -2.1624 -4.0213 28 6 4.1456 -2.0092 -3.2563 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3203 0.0002 33 1 1.3340 4.5114 -0.0030 34 1 3.7922 4.6381 0.0016 35 1 5.1344 2.5752 0.0011 36 1 6.0574 0.9988 0.1763 37 1 5.4116 0.5121 1.6295 38 1 3.2011 -3.1828 -0.8288 39 1 2.6106 -1.6170 -0.2120 40 1 1.1380 -1.3528 -2.1557 41 1 0.8319 -2.9474 -1.4253 42 1 0.0936 -2.3972 -4.1286 43 1 0.9726 -3.6871 -4.9839 44 1 -2.8460 -6.0193 -3.5375 45 1 2.3865 -1.1792 -4.1879 46 1 3.0165 -2.6432 -4.9809 47 1 4.7933 -1.3064 -3.7803 48 1 4.6387 -2.9781 -3.1789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602603624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:43 Heat of formation + Delta-G solvation = -40.808144 kcal Electronic energy + Delta-G solvation = -30457.583674 eV Core-core repulsion = 26512.504939 eV Total energy + Delta-G solvation = -3945.078735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90874 -40.70067 -39.23761 -38.33047 -35.99875 -35.92298 -34.40165 -32.21941 -31.40698 -31.18091 -30.47062 -28.15785 -27.96273 -26.56527 -24.65348 -23.67472 -23.03837 -22.74885 -21.76481 -19.86931 -19.13708 -18.96168 -18.78238 -17.37344 -17.14442 -17.07089 -16.69941 -16.56409 -16.16843 -16.02215 -15.81399 -15.69746 -15.39532 -15.21571 -14.95328 -14.73806 -14.51236 -14.43289 -14.09601 -13.89127 -13.54851 -13.32762 -13.10470 -12.95984 -12.83519 -12.50527 -12.38060 -12.27565 -12.20490 -12.04984 -11.98172 -11.87900 -11.84259 -11.40076 -11.04455 -10.76506 -10.01609 -9.81276 -9.75823 -9.17601 -9.05564 -8.26561 -6.29098 0.19723 0.41137 1.34889 1.36285 1.45540 1.52630 1.92214 2.25509 2.34481 2.71516 3.05734 3.16060 3.41267 3.60256 3.70656 3.81430 3.97362 3.99876 4.05070 4.07019 4.22785 4.23905 4.34095 4.36555 4.39165 4.41821 4.47943 4.60380 4.65174 4.72247 4.77620 4.82931 4.86502 4.91589 4.93704 5.05256 5.12681 5.27800 5.36480 5.43879 5.49804 5.53573 5.76209 5.91598 5.95190 6.29106 6.35421 6.38635 6.44672 6.61146 6.76891 7.06986 7.34380 8.89198 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.003799 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.691130 B = 7368.357507 C = 8323.191448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.321 6.321 3 C 0.125 3.875 4 C -0.216 4.216 5 C -0.078 4.078 6 C -0.160 4.160 7 C -0.077 4.077 8 C -0.170 4.170 9 C 0.130 3.870 10 H 0.115 0.885 11 N -0.824 5.824 12 C 0.530 3.470 13 O -0.576 6.576 14 N -0.604 5.604 15 C 0.116 3.884 16 C 0.066 3.934 17 N -0.539 5.539 18 C 0.173 3.827 19 C -0.510 4.510 20 H 0.047 0.953 21 C 0.016 3.984 22 N -0.943 5.943 23 Si 0.938 3.062 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.257 1.257 27 C 0.044 3.956 28 C 0.122 3.878 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.351 0.649 37 H 0.364 0.636 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.024 0.976 41 H 0.077 0.923 42 H -0.017 1.017 43 H 0.028 0.972 44 H 0.266 0.734 45 H 0.018 0.982 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 19.295 9.142 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.235 6.235 3 C 0.079 3.921 4 C -0.234 4.234 5 C -0.096 4.096 6 C -0.178 4.178 7 C -0.095 4.095 8 C -0.173 4.173 9 C 0.016 3.984 10 H 0.133 0.867 11 N -0.358 5.358 12 C 0.318 3.682 13 O -0.455 6.455 14 N -0.337 5.337 15 C -0.007 4.007 16 C -0.062 4.062 17 N -0.264 5.264 18 C 0.046 3.954 19 C -0.549 4.549 20 H 0.065 0.935 21 C -0.182 4.182 22 N -0.583 5.583 23 Si 0.763 3.237 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.181 1.181 27 C -0.085 4.085 28 C -0.001 4.001 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.001 0.999 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.767 18.095 8.696 22.326 hybrid contribution -1.823 1.463 -0.895 2.503 sum 7.944 19.558 7.800 22.505 Atomic orbital electron populations 1.23253 0.76928 1.05037 1.02080 1.86049 1.22798 1.26370 1.88249 1.19086 0.91769 0.85381 0.95849 1.21532 1.01091 0.92267 1.08544 1.21359 0.95022 0.97653 0.95539 1.21343 0.94146 0.98892 1.03384 1.20997 1.00698 0.91029 0.96818 1.19809 0.91231 0.96260 1.10044 1.20078 0.90948 0.95559 0.91865 0.86744 1.58663 1.16131 1.53423 1.07581 1.20726 0.79012 0.78925 0.89492 1.90601 1.38444 1.55449 1.61038 1.48210 1.39552 1.28971 1.16932 1.22228 0.86488 0.97560 0.94376 1.22278 0.96694 0.96230 0.91025 1.61821 1.15548 1.43912 1.05115 1.19928 0.87443 0.94135 0.93917 1.21178 1.04636 1.21782 1.07269 0.93499 1.25690 0.96710 0.94986 1.00812 1.70027 1.15699 1.31613 1.41004 0.85850 0.77617 0.79865 0.80388 1.19283 1.20762 1.18101 1.22461 0.93316 0.95081 0.97618 1.21673 0.96186 0.99916 0.82317 0.87800 0.90433 0.92810 0.83848 0.83133 0.83349 0.84511 0.83323 0.81972 0.90840 0.86514 0.95755 0.90432 0.99910 0.95427 0.92462 0.96361 0.89008 0.89188 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.38 113.37 1.06 1.48 16 2 O -0.32 -7.60 5.97 -92.47 -0.55 -8.15 16 3 C 0.13 2.92 6.66 22.51 0.15 3.07 16 4 C -0.22 -4.20 9.04 22.36 0.20 -4.00 16 5 C -0.08 -1.28 10.04 22.26 0.22 -1.06 16 6 C -0.16 -2.67 10.04 22.28 0.22 -2.44 16 7 C -0.08 -1.53 9.28 22.25 0.21 -1.32 16 8 C -0.17 -3.96 5.02 -19.77 -0.10 -4.06 16 9 C 0.13 3.19 2.82 43.43 0.12 3.31 16 10 H 0.11 2.74 5.30 -2.39 -0.01 2.73 16 11 N -0.82 -16.68 8.86 -174.96 -1.55 -18.23 16 12 C 0.53 16.53 6.71 87.66 0.59 17.12 16 13 O -0.58 -20.82 16.12 -3.02 -0.05 -20.87 16 14 N -0.60 -18.90 3.00 -817.06 -2.45 -21.35 16 15 C 0.12 3.50 5.95 86.50 0.51 4.01 16 16 C 0.07 2.41 5.07 86.54 0.44 2.85 16 17 N -0.54 -21.74 4.62 -898.90 -4.15 -25.89 16 18 C 0.17 8.06 3.79 85.56 0.32 8.38 16 19 C -0.51 -28.13 8.96 25.60 0.23 -27.90 16 20 H 0.05 2.85 7.37 -2.91 -0.02 2.83 16 21 C 0.02 0.89 5.47 84.65 0.46 1.36 16 22 N -0.94 -56.71 13.96 21.45 0.30 -56.41 16 23 Si 0.94 42.88 27.47 68.60 1.88 44.76 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.26 -11.14 6.54 99.48 0.65 -10.49 16 27 C 0.04 1.51 5.62 86.38 0.49 2.00 16 28 C 0.12 3.81 6.61 86.35 0.57 4.38 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.15 7.66 -2.38 -0.02 1.13 16 31 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 32 H 0.14 2.29 6.30 -2.91 -0.02 2.28 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.33 6.34 -2.91 -0.02 2.31 16 36 H 0.35 7.02 6.86 -89.69 -0.62 6.40 16 37 H 0.36 5.44 9.06 -89.69 -0.81 4.62 16 38 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.12 3.12 3.00 -2.39 -0.01 3.11 16 40 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 41 H 0.08 3.13 6.67 -2.39 -0.02 3.12 16 42 H -0.02 -0.79 7.18 -2.39 -0.02 -0.81 16 43 H 0.03 1.28 7.40 -2.39 -0.02 1.26 16 44 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.09 2.91 7.99 -2.39 -0.02 2.89 16 47 H 0.09 2.80 7.04 -2.39 -0.02 2.78 16 48 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -69.72 371.26 -1.34 -71.07 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.48 Total: 27.91 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.71 Total: 7.17 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -7.86 Total: -121.88 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.60 Total: -29.02 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Total: -69.72 -1.34 -71.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.257 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds