Wall clock time and date at job start Tue Mar 31 2020 17:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00368 * 2 1 4 4 C 1.38750 * 120.05341 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94410 * 180.02562 * 4 3 2 6 6 C 1.38278 * 120.05541 * 0.02881 * 5 4 3 7 7 C 1.38247 * 120.11346 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05620 * 359.67712 * 7 6 5 9 9 C 1.50697 * 120.03168 * 180.29843 * 8 7 6 10 10 H 1.08995 * 109.47030 * 210.91106 * 9 8 7 11 11 N 1.46901 * 109.47171 * 330.91265 * 9 8 7 12 12 C 1.50706 * 109.46953 * 90.91367 * 9 8 7 13 13 O 1.21278 * 119.99559 * 274.23586 * 12 9 8 14 14 N 1.34772 * 120.00049 * 94.24157 * 12 9 8 15 15 C 1.47080 * 120.87988 * 6.45023 * 14 12 9 16 16 C 1.53695 * 108.27693 * 128.75407 * 15 14 12 17 17 N 1.46908 * 109.25803 * 54.08192 * 16 15 14 18 18 C 1.46891 * 111.00325 * 172.60820 * 17 16 15 19 19 C 1.50703 * 109.47158 * 59.34905 * 18 17 16 20 20 H 1.08000 * 120.00269 * 5.70713 * 19 18 17 21 21 C 1.37878 * 120.00154 * 185.70118 * 19 18 17 22 22 N 1.31512 * 119.99771 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47114 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47278 * 119.99991 * 23 21 19 26 26 H 1.48493 * 109.47502 * 240.00234 * 23 21 19 27 27 C 1.46903 * 111.26541 * 296.75928 * 17 16 15 28 28 C 1.47073 * 120.88079 * 186.72723 * 14 12 9 29 29 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.46906 * 60.00211 * 1 2 3 31 31 H 1.09008 * 109.46758 * 300.00220 * 1 2 3 32 32 H 1.08003 * 120.02842 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.97098 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.94667 * 179.97438 * 6 5 4 35 35 H 1.08005 * 119.97098 * 179.97438 * 7 6 5 36 36 H 1.00902 * 110.99893 * 296.05126 * 11 9 8 37 37 H 1.00909 * 110.99639 * 59.99738 * 11 9 8 38 38 H 1.08997 * 109.63163 * 248.51959 * 15 14 12 39 39 H 1.08996 * 109.62944 * 9.10573 * 15 14 12 40 40 H 1.09006 * 109.65170 * 294.07846 * 16 15 14 41 41 H 1.08997 * 109.42291 * 173.94319 * 16 15 14 42 42 H 1.09002 * 109.47630 * 179.34820 * 18 17 16 43 43 H 1.09001 * 109.47264 * 299.35531 * 18 17 16 44 44 H 0.97008 * 119.99616 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.49524 * 303.14109 * 27 17 16 46 46 H 1.09006 * 109.48810 * 183.06318 * 27 17 16 47 47 H 1.09004 * 109.63033 * 350.89757 * 28 14 12 48 48 H 1.08998 * 109.62972 * 111.47957 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0017 7 6 4.0560 2.5170 -0.0012 8 6 3.4312 1.2847 0.0066 9 6 4.2537 0.0220 0.0139 10 1 3.7131 -0.7668 -0.5089 11 7 5.5348 0.2682 -0.6615 12 6 4.5096 -0.4025 1.4371 13 8 5.4499 0.0596 2.0480 14 7 3.6937 -1.2959 2.0309 15 6 2.6345 -1.9740 1.2684 16 6 2.7614 -3.4869 1.5079 17 7 2.7520 -3.7511 2.9530 18 6 2.6950 -5.1937 3.2240 19 6 3.8909 -5.8691 2.6039 20 1 4.6670 -5.2763 2.1427 21 6 3.9945 -7.2438 2.6253 22 7 3.0493 -7.9657 3.1866 23 14 5.4773 -8.0809 1.8572 24 1 6.3908 -7.0530 1.2967 25 1 6.1939 -8.8671 2.8935 26 1 5.0264 -8.9880 0.7715 27 6 3.9108 -3.1366 3.6145 28 6 3.8349 -1.6139 3.4598 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 0.2129 2.3203 -0.0014 33 1 1.3341 4.5114 -0.0011 34 1 3.7923 4.6380 -0.0025 35 1 5.1345 2.5751 -0.0021 36 1 5.3931 0.4920 -1.6352 37 1 6.0553 0.9962 -0.1953 38 1 1.6588 -1.6270 1.6087 39 1 2.7528 -1.7590 0.2064 40 1 3.6953 -3.8490 1.0780 41 1 1.9217 -3.9998 1.0390 42 1 2.7009 -5.3616 4.3010 43 1 1.7818 -5.6079 2.7967 44 1 3.1223 -8.9329 3.2020 45 1 4.8287 -3.5035 3.1553 46 1 3.9047 -3.3955 4.6734 47 1 4.7473 -1.1606 3.8474 48 1 2.9725 -1.2329 4.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602603625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:46 Heat of formation + Delta-G solvation = -45.752341 kcal Electronic energy + Delta-G solvation = -30148.302607 eV Core-core repulsion = 26203.009476 eV Total energy + Delta-G solvation = -3945.293131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85751 -40.67412 -39.17900 -38.31862 -36.02059 -35.90860 -34.30267 -32.13792 -31.36620 -31.12712 -29.96174 -28.04384 -27.66584 -26.63785 -24.48553 -24.22083 -22.99536 -22.90599 -21.58513 -20.00481 -19.06869 -18.87225 -18.35239 -17.31263 -17.20531 -16.90044 -16.73789 -16.57910 -16.10459 -15.99344 -15.90628 -15.47325 -15.35105 -15.26643 -14.84579 -14.64846 -14.46738 -14.19508 -13.93978 -13.65060 -13.47479 -13.25260 -12.96779 -12.92791 -12.80689 -12.54358 -12.44283 -12.36712 -12.15947 -11.99605 -11.94029 -11.85899 -11.79648 -11.63122 -11.02499 -10.62389 -9.97524 -9.77673 -9.71903 -9.12599 -9.05263 -8.18355 -6.36894 0.22925 0.45249 1.32592 1.35269 1.46451 1.56280 1.96643 2.35069 2.37409 2.75315 3.06692 3.29571 3.43565 3.63064 3.70805 3.82940 3.98986 4.07081 4.11289 4.14235 4.29668 4.35490 4.37640 4.47654 4.49149 4.52880 4.56555 4.64444 4.70392 4.79212 4.86091 4.91330 4.95657 5.03442 5.19871 5.22027 5.30604 5.31767 5.40836 5.48650 5.53707 5.72131 5.80111 5.94872 6.00247 6.17647 6.43066 6.43562 6.43641 6.46691 6.83301 7.10928 7.34514 8.84073 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003252 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.515642 B = 8609.262110 C = 9162.796414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.132 3.868 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.161 4.161 7 C -0.083 4.083 8 C -0.170 4.170 9 C 0.131 3.869 10 H 0.115 0.885 11 N -0.831 5.831 12 C 0.525 3.475 13 O -0.579 6.579 14 N -0.604 5.604 15 C 0.134 3.866 16 C 0.050 3.950 17 N -0.532 5.532 18 C 0.201 3.799 19 C -0.557 4.557 20 H 0.047 0.953 21 C 0.017 3.983 22 N -0.921 5.921 23 Si 0.951 3.049 24 H -0.276 1.276 25 H -0.277 1.277 26 H -0.273 1.273 27 C 0.056 3.944 28 C 0.125 3.875 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.363 0.637 37 H 0.351 0.649 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.014 0.986 41 H 0.082 0.918 42 H 0.006 0.994 43 H 0.017 0.983 44 H 0.266 0.734 45 H 0.010 0.990 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 24.283 -10.074 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.086 3.914 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.179 4.179 7 C -0.101 4.101 8 C -0.173 4.173 9 C 0.016 3.984 10 H 0.133 0.867 11 N -0.365 5.365 12 C 0.313 3.687 13 O -0.459 6.459 14 N -0.336 5.336 15 C 0.012 3.988 16 C -0.080 4.080 17 N -0.256 5.256 18 C 0.074 3.926 19 C -0.596 4.596 20 H 0.065 0.935 21 C -0.183 4.183 22 N -0.561 5.561 23 Si 0.777 3.223 24 H -0.201 1.201 25 H -0.203 1.203 26 H -0.198 1.198 27 C -0.074 4.074 28 C 0.003 3.997 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.148 0.852 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.024 0.976 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.029 0.971 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.365 23.584 -9.338 26.152 hybrid contribution 0.993 -0.496 -0.506 1.220 sum -5.371 23.088 -9.844 25.667 Atomic orbital electron populations 1.23339 0.76560 1.05573 1.02287 1.86166 1.23288 1.26081 1.88121 1.18974 0.91353 0.85611 0.95472 1.21547 1.01265 0.91876 1.08224 1.21371 0.94727 0.97962 0.95411 1.21310 0.94419 0.98590 1.03579 1.20980 1.00522 0.91319 0.97285 1.19729 0.91628 0.95614 1.10327 1.20050 0.90820 0.95975 0.91534 0.86716 1.58614 1.16880 1.53579 1.07401 1.20798 0.80764 0.78035 0.89067 1.90598 1.30758 1.57668 1.66842 1.48192 1.33625 1.41135 1.10687 1.22155 0.90580 0.89441 0.96669 1.22422 1.00374 0.95796 0.89374 1.62444 1.39290 1.13711 1.10138 1.19440 0.95153 0.82901 0.95061 1.21961 1.07335 0.92379 1.37897 0.93513 1.25704 0.98738 0.98204 0.95606 1.70043 1.34621 1.06324 1.45091 0.85614 0.79719 0.78461 0.78528 1.20057 1.20302 1.19837 1.22203 0.92077 0.93602 0.99474 1.21651 1.02695 0.94072 0.81330 0.86794 0.91092 0.91939 0.83097 0.82982 0.83691 0.85207 0.82136 0.83343 0.89207 0.87746 0.96745 0.89970 0.97565 0.96453 0.92495 0.97120 0.90451 0.90040 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.71 113.37 1.10 1.29 16 2 O -0.32 -6.03 5.77 -92.42 -0.53 -6.56 16 3 C 0.13 2.63 6.66 22.51 0.15 2.78 16 4 C -0.21 -3.24 9.04 22.37 0.20 -3.04 16 5 C -0.08 -1.05 10.04 22.25 0.22 -0.83 16 6 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 7 C -0.08 -1.61 9.28 22.26 0.21 -1.40 16 8 C -0.17 -3.78 5.02 -19.77 -0.10 -3.88 16 9 C 0.13 3.40 2.83 43.42 0.12 3.53 16 10 H 0.12 2.93 5.16 -2.39 -0.01 2.92 16 11 N -0.83 -19.65 8.79 -174.95 -1.54 -21.18 16 12 C 0.52 17.64 6.81 87.66 0.60 18.23 16 13 O -0.58 -22.89 15.88 -3.02 -0.05 -22.94 16 14 N -0.60 -19.96 3.00 -817.08 -2.45 -22.42 16 15 C 0.13 3.93 4.88 86.50 0.42 4.36 16 16 C 0.05 1.88 5.17 86.54 0.45 2.33 16 17 N -0.53 -22.59 4.83 -898.85 -4.34 -26.93 16 18 C 0.20 10.44 5.11 85.56 0.44 10.88 16 19 C -0.56 -31.22 7.75 25.60 0.20 -31.02 16 20 H 0.05 2.68 5.89 -2.91 -0.02 2.67 16 21 C 0.02 0.98 5.46 84.66 0.46 1.45 16 22 N -0.92 -54.38 13.29 21.45 0.28 -54.10 16 23 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.06 2.26 5.24 86.38 0.45 2.72 16 28 C 0.13 4.30 6.61 86.35 0.57 4.88 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.06 0.65 7.66 -2.38 -0.02 0.63 16 32 H 0.15 1.58 6.30 -2.91 -0.02 1.56 16 33 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.13 2.35 6.35 -2.91 -0.02 2.33 16 36 H 0.36 6.45 9.06 -89.69 -0.81 5.64 16 37 H 0.35 8.20 6.75 -89.69 -0.61 7.59 16 38 H 0.09 2.38 7.17 -2.39 -0.02 2.37 16 39 H 0.10 2.73 4.23 -2.39 -0.01 2.72 16 40 H 0.01 0.63 6.80 -2.38 -0.02 0.61 16 41 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 42 H 0.01 0.35 8.07 -2.39 -0.02 0.33 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 45 H 0.01 0.49 6.91 -2.39 -0.02 0.48 16 46 H 0.08 3.07 8.05 -2.38 -0.02 3.06 16 47 H 0.08 2.89 7.04 -2.39 -0.02 2.87 16 48 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -71.39 372.15 -1.29 -72.69 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.41 Total: 24.60 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.72 Total: 9.98 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -8.05 Total: -124.63 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.58 Total: -29.50 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.39 -1.29 -72.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.934 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds