Wall clock time and date at job start Tue Mar 31 2020 17:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99707 * 2 1 4 4 C 1.50696 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.38306 * 119.96896 * 270.02601 * 4 3 2 6 6 C 1.38258 * 120.14377 * 179.97438 * 5 4 3 7 7 C 1.38134 * 120.06817 * 359.74365 * 6 5 4 8 8 C 1.38843 * 119.92947 * 0.50793 * 7 6 5 9 9 N 1.39945 * 120.07387 * 179.76796 * 8 7 6 10 10 C 1.34784 * 119.99541 * 325.25168 * 9 8 7 11 11 O 1.21584 * 119.99815 * 4.87786 * 10 9 8 12 12 N 1.34770 * 119.99657 * 184.87791 * 10 9 8 13 13 C 1.46505 * 120.00071 * 179.97438 * 12 10 9 14 14 C 1.53346 * 109.41908 * 275.13209 * 13 12 10 15 15 C 1.53198 * 109.14861 * 178.67308 * 14 13 12 16 16 N 1.46927 * 108.89278 * 54.57439 * 15 14 13 17 17 C 1.36934 * 120.63091 * 126.30174 * 16 15 14 18 18 H 1.08004 * 119.99730 * 330.95909 * 17 16 15 19 19 C 1.38810 * 120.00473 * 150.96164 * 17 16 15 20 20 N 1.31617 * 120.00106 * 164.10770 * 19 17 16 21 21 Si 1.86800 * 119.99663 * 344.10970 * 19 17 16 22 22 H 1.48501 * 109.47200 * 90.90954 * 21 19 17 23 23 H 1.48501 * 109.46863 * 210.91025 * 21 19 17 24 24 H 1.48501 * 109.47021 * 330.90773 * 21 19 17 25 25 C 1.46924 * 118.74089 * 306.32234 * 16 15 14 26 26 C 1.53038 * 109.45978 * 154.99987 * 13 12 10 27 27 C 1.38095 * 119.96628 * 90.00673 * 4 3 2 28 28 H 1.08998 * 109.47402 * 299.99520 * 1 2 3 29 29 H 1.09003 * 109.47249 * 59.99997 * 1 2 3 30 30 H 1.09008 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46409 * 60.00546 * 3 2 1 32 32 H 1.08995 * 109.47716 * 300.00354 * 3 2 1 33 33 H 1.08003 * 119.92627 * 359.95948 * 5 4 3 34 34 H 1.07996 * 119.96254 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.03844 * 180.25786 * 7 6 5 36 36 H 0.96995 * 120.00535 * 145.24882 * 9 8 7 37 37 H 0.97001 * 120.00618 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.45397 * 35.03159 * 13 12 10 39 39 H 1.09001 * 109.68517 * 58.70603 * 14 13 12 40 40 H 1.09005 * 109.47667 * 298.50612 * 14 13 12 41 41 H 1.09000 * 109.58231 * 294.71820 * 15 14 13 42 42 H 1.09000 * 109.58878 * 174.43435 * 15 14 13 43 43 H 0.97004 * 119.99765 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58622 * 173.39332 * 25 16 15 45 45 H 1.09003 * 109.58558 * 293.67849 * 25 16 15 46 46 H 1.09003 * 109.49895 * 61.43811 * 26 13 12 47 47 H 1.08995 * 109.52816 * 301.35634 * 26 13 12 48 48 H 1.08001 * 120.03210 * 0.03875 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2016 1.1313 1.1972 6 6 5.5798 1.0217 1.2008 7 6 6.2725 0.9617 0.0072 8 6 5.5841 1.0222 -1.1970 9 7 6.2832 0.9666 -2.4080 10 6 7.5023 1.5324 -2.5089 11 8 8.0327 2.0129 -1.5260 12 7 8.1334 1.5655 -3.6992 13 6 9.4583 2.1810 -3.8091 14 6 9.3029 3.6931 -4.0113 15 6 10.6917 4.3347 -4.0921 16 7 11.4669 3.6603 -5.1423 17 6 12.0527 4.3808 -6.1487 18 1 11.6129 5.3127 -6.4722 19 6 13.2117 3.9136 -6.7531 20 7 13.6024 4.4172 -7.9046 21 14 14.2167 2.5699 -5.9321 22 1 13.7522 1.2426 -6.4094 23 1 15.6509 2.7451 -6.2749 24 1 14.0460 2.6540 -4.4593 25 6 11.6013 2.1980 -5.0925 26 6 10.2037 1.5772 -5.0016 27 6 4.1996 1.1325 -1.1973 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6885 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.6620 1.1741 2.1318 34 1 6.1150 0.9784 2.1379 35 1 7.3487 0.8719 0.0106 36 1 5.8905 0.5208 -3.1748 37 1 7.7102 1.1824 -4.4835 38 1 10.0226 1.9935 -2.8955 39 1 8.7526 4.1209 -3.1732 40 1 8.7604 3.8820 -4.9377 41 1 11.2010 4.2252 -3.1346 42 1 10.5919 5.3928 -4.3340 43 1 14.4126 4.0909 -8.3267 44 1 12.0995 1.8459 -5.9957 45 1 12.1870 1.9145 -4.2180 46 1 9.6526 1.7859 -5.9186 47 1 10.2925 0.4992 -4.8678 48 1 3.6609 1.1761 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609339317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:21 Heat of formation + Delta-G solvation = -16.466573 kcal Electronic energy + Delta-G solvation = -28036.930228 eV Core-core repulsion = 24092.907023 eV Total energy + Delta-G solvation = -3944.023205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.81366 -39.37599 -38.13210 -37.53825 -34.97012 -34.59370 -32.31063 -31.97573 -30.57436 -30.38611 -29.24839 -27.58570 -25.67057 -25.05689 -23.15866 -22.72399 -22.44561 -21.56696 -20.52667 -19.68165 -18.53458 -17.62722 -16.82353 -16.73903 -16.46128 -16.27998 -15.76726 -15.42955 -15.22910 -14.87655 -14.73631 -14.18022 -14.14605 -13.94273 -13.81111 -13.23442 -13.03218 -12.97549 -12.79268 -12.65055 -12.39431 -12.01853 -11.93119 -11.80798 -11.77978 -11.43147 -11.02155 -10.88987 -10.56951 -10.49559 -10.30497 -10.15849 -10.12731 -9.98194 -9.74910 -9.47934 -9.04764 -8.92263 -8.66974 -8.23360 -6.98079 -5.94808 -3.34916 1.09043 1.15549 2.50283 3.02720 3.28780 3.37518 3.47483 3.49683 3.83886 4.06204 4.50720 4.51069 4.56900 4.81567 4.87427 4.91924 4.94929 4.98330 5.05518 5.10669 5.19987 5.24121 5.30496 5.35063 5.39392 5.49366 5.63764 5.72981 5.80146 6.01296 6.04747 6.08331 6.14552 6.17546 6.29218 6.36669 6.37472 6.40476 6.52907 6.63124 6.63163 6.69140 6.70955 6.80141 6.88822 6.96605 7.85941 7.96481 8.32631 8.47282 8.92459 9.70256 10.07995 11.21259 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.001977 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.866175 B =14156.226707 C =14366.699717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.077 4.077 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.112 4.112 8 C 0.168 3.832 9 N -0.691 5.691 10 C 0.702 3.298 11 O -0.572 6.572 12 N -0.733 5.733 13 C 0.168 3.832 14 C -0.142 4.142 15 C 0.151 3.849 16 N -0.607 5.607 17 C -0.259 4.259 18 H 0.086 0.914 19 C 0.021 3.979 20 N -0.913 5.913 21 Si 0.889 3.111 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.269 1.269 25 C 0.126 3.874 26 C -0.140 4.140 27 C -0.129 4.129 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.406 0.594 37 H 0.394 0.606 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.777 -10.084 14.996 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.078 4.078 5 C -0.137 4.137 6 C -0.123 4.123 7 C -0.133 4.133 8 C 0.072 3.928 9 N -0.338 5.338 10 C 0.403 3.597 11 O -0.449 6.449 12 N -0.386 5.386 13 C 0.064 3.936 14 C -0.182 4.182 15 C 0.025 3.975 16 N -0.331 5.331 17 C -0.387 4.387 18 H 0.104 0.896 19 C -0.177 4.177 20 N -0.556 5.556 21 Si 0.720 3.280 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.194 1.194 25 C 0.000 4.000 26 C -0.180 4.180 27 C -0.150 4.150 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.241 0.759 37 H 0.228 0.772 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.954 -9.738 15.684 30.242 hybrid contribution -0.059 -0.929 -0.545 1.079 sum -24.013 -10.667 15.140 30.325 Atomic orbital electron populations 1.22767 0.80983 1.02887 1.00032 1.87984 1.19582 1.27479 1.95411 1.21332 0.89816 0.85049 1.00974 1.19238 0.93644 1.01953 0.92986 1.20981 0.94326 1.01171 0.97260 1.21058 0.93862 0.99381 0.97962 1.21457 1.01750 0.99366 0.90694 1.17452 0.90347 0.99694 0.85260 1.42658 1.18485 1.59557 1.13130 1.15972 0.80406 0.78912 0.84433 1.90921 1.65968 1.51921 1.36081 1.45507 1.21010 1.63391 1.08740 1.20984 0.80360 0.92701 0.99540 1.22463 0.99918 0.94622 1.01225 1.20897 0.89221 0.96247 0.91180 1.44387 1.60623 1.00437 1.27625 1.18943 1.04397 1.06364 1.09015 0.89637 1.25332 0.96987 0.98465 0.96947 1.69787 1.25241 1.44833 1.15724 0.86906 0.79188 0.81276 0.80629 1.21670 1.23229 1.19394 1.21380 0.93344 0.85074 1.00222 1.22356 0.99229 0.98998 0.97431 1.20701 0.92318 1.03765 0.98197 0.94001 0.94000 0.89526 0.92269 0.92403 0.86066 0.85549 0.83824 0.75929 0.77220 0.89736 0.92130 0.91920 0.95603 0.91567 0.92756 0.90500 0.95223 0.91136 0.92197 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.42 10.69 -35.23 -0.38 -3.80 16 3 C 0.10 0.80 6.06 36.00 0.22 1.02 16 4 C -0.08 -0.74 5.51 -104.65 -0.58 -1.32 16 5 C -0.12 -1.12 9.70 -39.55 -0.38 -1.50 16 6 C -0.10 -1.08 10.04 -39.61 -0.40 -1.47 16 7 C -0.11 -1.39 8.70 -39.40 -0.34 -1.73 16 8 C 0.17 1.93 6.31 -83.69 -0.53 1.41 16 9 N -0.69 -7.32 5.35 -14.22 -0.08 -7.39 16 10 C 0.70 9.66 8.38 -86.92 -0.73 8.93 16 11 O -0.57 -9.98 13.41 5.29 0.07 -9.91 16 12 N -0.73 -9.22 5.08 -58.48 -0.30 -9.52 16 13 C 0.17 2.64 2.42 -67.73 -0.16 2.48 16 14 C -0.14 -2.42 5.68 -26.45 -0.15 -2.57 16 15 C 0.15 3.02 6.50 -3.71 -0.02 3.00 16 16 N -0.61 -14.21 2.77 -172.31 -0.48 -14.69 16 17 C -0.26 -7.16 10.06 -15.06 -0.15 -7.31 16 18 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 19 C 0.02 0.61 5.31 -17.43 -0.09 0.52 16 20 N -0.91 -27.81 13.97 55.49 0.78 -27.04 16 21 Si 0.89 22.27 24.26 -169.99 -4.12 18.14 16 22 H -0.29 -6.89 6.58 56.52 0.37 -6.52 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.27 -6.63 6.41 56.52 0.36 -6.27 16 25 C 0.13 2.66 4.16 -3.71 -0.02 2.65 16 26 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 27 C -0.13 -1.28 9.62 -39.39 -0.38 -1.66 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.04 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.14 2.02 6.19 -52.49 -0.32 1.70 16 36 H 0.41 2.94 8.84 -40.82 -0.36 2.57 16 37 H 0.39 3.78 8.62 -40.82 -0.35 3.43 16 38 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.08 1.77 4.34 -51.93 -0.23 1.54 16 45 H 0.03 0.63 6.89 -51.93 -0.36 0.27 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -33.87 382.86 -9.03 -42.90 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.54 Total: 4.28 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.75 Total: 1.26 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.08 Total: -58.64 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.31 Total: -13.71 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.12 Total: 18.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.87 -9.03 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.428 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds