Wall clock time and date at job start Tue Mar 31 2020 17:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99707 * 2 1 4 4 C 1.50696 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.38306 * 119.96896 * 270.02601 * 4 3 2 6 6 C 1.38258 * 120.14377 * 179.97438 * 5 4 3 7 7 C 1.38134 * 120.06817 * 359.74365 * 6 5 4 8 8 C 1.38843 * 119.92947 * 0.50793 * 7 6 5 9 9 N 1.39945 * 120.07387 * 179.76796 * 8 7 6 10 10 C 1.34784 * 119.99541 * 325.25168 * 9 8 7 11 11 O 1.21584 * 119.99815 * 4.87786 * 10 9 8 12 12 N 1.34770 * 119.99657 * 184.87791 * 10 9 8 13 13 C 1.46505 * 120.00071 * 179.97438 * 12 10 9 14 14 C 1.53346 * 109.41908 * 275.13209 * 13 12 10 15 15 C 1.53198 * 109.14861 * 178.67308 * 14 13 12 16 16 N 1.46927 * 108.89278 * 54.57439 * 15 14 13 17 17 C 1.36934 * 120.63091 * 126.30174 * 16 15 14 18 18 H 1.08004 * 119.99730 * 330.95909 * 17 16 15 19 19 C 1.38810 * 120.00473 * 150.96164 * 17 16 15 20 20 N 1.31617 * 120.00106 * 164.10770 * 19 17 16 21 21 Si 1.86800 * 119.99663 * 344.10970 * 19 17 16 22 22 H 1.48501 * 109.47200 * 90.90954 * 21 19 17 23 23 H 1.48501 * 109.46863 * 210.91025 * 21 19 17 24 24 H 1.48501 * 109.47021 * 330.90773 * 21 19 17 25 25 C 1.46924 * 118.74089 * 306.32234 * 16 15 14 26 26 C 1.53038 * 109.45978 * 154.99987 * 13 12 10 27 27 C 1.38095 * 119.96628 * 90.00673 * 4 3 2 28 28 H 1.08998 * 109.47402 * 299.99520 * 1 2 3 29 29 H 1.09003 * 109.47249 * 59.99997 * 1 2 3 30 30 H 1.09008 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46409 * 60.00546 * 3 2 1 32 32 H 1.08995 * 109.47716 * 300.00354 * 3 2 1 33 33 H 1.08003 * 119.92627 * 359.95948 * 5 4 3 34 34 H 1.07996 * 119.96254 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.03844 * 180.25786 * 7 6 5 36 36 H 0.96995 * 120.00535 * 145.24882 * 9 8 7 37 37 H 0.97001 * 120.00618 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.45397 * 35.03159 * 13 12 10 39 39 H 1.09001 * 109.68517 * 58.70603 * 14 13 12 40 40 H 1.09005 * 109.47667 * 298.50612 * 14 13 12 41 41 H 1.09000 * 109.58231 * 294.71820 * 15 14 13 42 42 H 1.09000 * 109.58878 * 174.43435 * 15 14 13 43 43 H 0.97004 * 119.99765 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58622 * 173.39332 * 25 16 15 45 45 H 1.09003 * 109.58558 * 293.67849 * 25 16 15 46 46 H 1.09003 * 109.49895 * 61.43811 * 26 13 12 47 47 H 1.08995 * 109.52816 * 301.35634 * 26 13 12 48 48 H 1.08001 * 120.03210 * 0.03875 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2016 1.1313 1.1972 6 6 5.5798 1.0217 1.2008 7 6 6.2725 0.9617 0.0072 8 6 5.5841 1.0222 -1.1970 9 7 6.2832 0.9666 -2.4080 10 6 7.5023 1.5324 -2.5089 11 8 8.0327 2.0129 -1.5260 12 7 8.1334 1.5655 -3.6992 13 6 9.4583 2.1810 -3.8091 14 6 9.3029 3.6931 -4.0113 15 6 10.6917 4.3347 -4.0921 16 7 11.4669 3.6603 -5.1423 17 6 12.0527 4.3808 -6.1487 18 1 11.6129 5.3127 -6.4722 19 6 13.2117 3.9136 -6.7531 20 7 13.6024 4.4172 -7.9046 21 14 14.2167 2.5699 -5.9321 22 1 13.7522 1.2426 -6.4094 23 1 15.6509 2.7451 -6.2749 24 1 14.0460 2.6540 -4.4593 25 6 11.6013 2.1980 -5.0925 26 6 10.2037 1.5772 -5.0016 27 6 4.1996 1.1325 -1.1973 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6885 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.6620 1.1741 2.1318 34 1 6.1150 0.9784 2.1379 35 1 7.3487 0.8719 0.0106 36 1 5.8905 0.5208 -3.1748 37 1 7.7102 1.1824 -4.4835 38 1 10.0226 1.9935 -2.8955 39 1 8.7526 4.1209 -3.1732 40 1 8.7604 3.8820 -4.9377 41 1 11.2010 4.2252 -3.1346 42 1 10.5919 5.3928 -4.3340 43 1 14.4126 4.0909 -8.3267 44 1 12.0995 1.8459 -5.9957 45 1 12.1870 1.9145 -4.2180 46 1 9.6526 1.7859 -5.9186 47 1 10.2925 0.4992 -4.8678 48 1 3.6609 1.1761 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609339317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:20 Heat of formation + Delta-G solvation = -40.288636 kcal Electronic energy + Delta-G solvation = -28037.963230 eV Core-core repulsion = 24092.907023 eV Total energy + Delta-G solvation = -3945.056207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79920 -40.28613 -39.30884 -38.40268 -36.20006 -35.77453 -34.08319 -32.79563 -32.03026 -31.93055 -30.28546 -28.11474 -26.81026 -26.22343 -24.67061 -23.97941 -23.31358 -22.89933 -21.52226 -21.15701 -19.61278 -18.87589 -18.28013 -17.50558 -17.28725 -17.15912 -16.92411 -16.43528 -16.34936 -15.95948 -15.75643 -15.70001 -15.38650 -15.26639 -14.77354 -14.59985 -14.53772 -14.25735 -13.87146 -13.76134 -13.54456 -13.46091 -13.12505 -12.65115 -12.61721 -12.52830 -12.30143 -12.25119 -12.16999 -12.00382 -11.78882 -11.54792 -11.44171 -11.35232 -11.06586 -10.72494 -10.62276 -10.11753 -9.82130 -9.07120 -8.94236 -8.15011 -5.51770 0.30018 0.38007 1.29373 1.43394 1.50108 1.52904 2.02165 2.41473 2.67528 3.09310 3.10506 3.21312 3.32027 3.75801 3.88388 3.93692 3.97102 4.17517 4.21751 4.31541 4.32275 4.40615 4.43806 4.47793 4.54332 4.58761 4.62033 4.63051 4.66810 4.75998 4.84668 4.90801 4.90998 5.00940 5.02485 5.06849 5.16092 5.31720 5.38228 5.38891 5.48966 5.59489 5.62200 5.87791 5.94859 6.07784 6.13502 6.23101 6.90818 6.96691 7.45891 7.60670 8.01417 9.04776 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.001977 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.866175 B =14156.226707 C =14366.699717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.104 3.896 4 C -0.083 4.083 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.136 4.136 8 C 0.150 3.850 9 N -0.674 5.674 10 C 0.701 3.299 11 O -0.611 6.611 12 N -0.720 5.720 13 C 0.179 3.821 14 C -0.128 4.128 15 C 0.147 3.853 16 N -0.619 5.619 17 C -0.248 4.248 18 H 0.052 0.948 19 C -0.036 4.036 20 N -0.960 5.960 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.314 1.314 24 H -0.263 1.263 25 C 0.118 3.882 26 C -0.126 4.126 27 C -0.127 4.127 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.423 0.577 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.057 0.943 43 H 0.262 0.738 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.374 -11.988 16.218 34.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.028 3.972 4 C -0.084 4.084 5 C -0.138 4.138 6 C -0.129 4.129 7 C -0.157 4.157 8 C 0.055 3.945 9 N -0.323 5.323 10 C 0.402 3.598 11 O -0.491 6.491 12 N -0.374 5.374 13 C 0.074 3.926 14 C -0.168 4.168 15 C 0.022 3.978 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.069 0.931 19 C -0.230 4.230 20 N -0.606 5.606 21 Si 0.781 3.219 22 H -0.194 1.194 23 H -0.243 1.243 24 H -0.187 1.187 25 C -0.008 4.008 26 C -0.166 4.166 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.261 0.739 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.636 -11.695 16.909 33.648 hybrid contribution 0.601 -0.277 -0.846 1.074 sum -26.035 -11.972 16.063 32.851 Atomic orbital electron populations 1.22940 0.79359 1.03773 1.01084 1.87934 1.21420 1.28113 1.95646 1.21391 0.88383 0.85004 1.02377 1.19600 0.95025 1.00929 0.92860 1.21277 0.93983 1.00158 0.98381 1.21261 0.94560 0.99096 0.97942 1.21416 1.00864 1.01274 0.92124 1.17616 0.91095 1.00711 0.85101 1.42399 1.17348 1.58888 1.13665 1.16066 0.81025 0.78754 0.83973 1.90909 1.67123 1.53594 1.37431 1.45103 1.19922 1.63097 1.09292 1.20624 0.81652 0.91754 0.98575 1.22271 0.97637 0.95614 1.01295 1.20999 0.90568 0.96034 0.90224 1.44479 1.60788 1.01629 1.27508 1.18859 1.04166 1.05457 1.09261 0.93065 1.25964 0.98157 1.01512 0.97402 1.69924 1.25935 1.47349 1.17427 0.85886 0.76724 0.79604 0.79719 1.19359 1.24281 1.18747 1.21449 0.96271 0.83655 0.99403 1.22158 0.96208 1.00430 0.97810 1.20920 0.91588 1.02931 0.99378 0.92872 0.93004 0.88834 0.90773 0.91147 0.83920 0.84176 0.86176 0.73889 0.75086 0.91159 0.91859 0.91866 0.95269 0.92434 0.92939 0.92246 0.94821 0.90699 0.89081 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.30 10.69 -148.98 -1.59 -7.89 16 3 C 0.10 1.31 6.06 71.23 0.43 1.74 16 4 C -0.08 -1.41 5.51 -19.88 -0.11 -1.52 16 5 C -0.12 -2.03 9.70 22.29 0.22 -1.81 16 6 C -0.11 -2.18 10.04 22.25 0.22 -1.96 16 7 C -0.14 -3.34 8.70 22.39 0.19 -3.15 16 8 C 0.15 3.26 6.31 38.15 0.24 3.50 16 9 N -0.67 -13.04 5.35 -317.18 -1.70 -14.74 16 10 C 0.70 18.20 8.38 179.05 1.50 19.70 16 11 O -0.61 -21.05 13.41 -3.98 -0.05 -21.10 16 12 N -0.72 -16.30 5.08 -457.19 -2.32 -18.63 16 13 C 0.18 5.27 2.42 45.12 0.11 5.38 16 14 C -0.13 -4.20 5.68 30.78 0.17 -4.02 16 15 C 0.15 5.87 6.50 86.36 0.56 6.43 16 16 N -0.62 -28.82 2.77 -699.08 -1.94 -30.76 16 17 C -0.25 -14.00 10.06 84.03 0.85 -13.16 16 18 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 19 C -0.04 -2.08 5.31 84.86 0.45 -1.63 16 20 N -0.96 -60.12 13.97 21.65 0.30 -59.81 16 21 Si 0.95 46.24 24.26 68.60 1.66 47.90 16 22 H -0.27 -11.94 6.58 99.48 0.65 -11.29 16 23 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 24 H -0.26 -12.35 6.41 99.48 0.64 -11.72 16 25 C 0.12 4.76 4.16 86.36 0.36 5.12 16 26 C -0.13 -3.80 5.55 30.67 0.17 -3.63 16 27 C -0.13 -2.26 9.62 22.39 0.22 -2.04 16 28 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.70 8.09 -2.38 -0.02 0.68 16 32 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 33 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.12 3.50 6.19 -2.91 -0.02 3.48 16 36 H 0.42 4.99 8.84 -92.71 -0.82 4.17 16 37 H 0.41 6.51 8.62 -92.71 -0.80 5.71 16 38 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 43 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 44 H 0.06 2.62 4.34 -2.39 -0.01 2.61 16 45 H 0.03 1.35 6.89 -2.39 -0.02 1.33 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -75.13 382.86 0.44 -74.70 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.76 Total: 19.95 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.83 Total: 10.39 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -5.65 Total: -123.94 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.65 Total: -29.00 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.66 Total: 47.90 kcal Total: -75.13 0.44 -74.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.409 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds