Wall clock time and date at job start Tue Mar 31 2020 17:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 116.99973 * 2 1 4 4 C 1.38803 * 120.02247 * 359.73203 * 3 2 1 5 5 C 1.38166 * 120.08919 * 179.74239 * 4 3 2 6 6 C 1.38165 * 120.12208 * 0.50974 * 5 4 3 7 7 C 1.38892 * 120.04228 * 359.76848 * 6 5 4 8 8 N 1.39915 * 120.04629 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00406 * 144.92662 * 8 7 6 10 10 O 1.21292 * 119.99587 * 4.62040 * 9 8 7 11 11 C 1.50694 * 120.00360 * 184.61909 * 9 8 7 12 12 N 1.46896 * 109.47223 * 179.97438 * 11 9 8 13 13 C 1.46952 * 111.00296 * 293.80022 * 12 11 9 14 14 C 1.53052 * 109.36603 * 176.81279 * 13 12 11 15 15 N 1.46952 * 109.36402 * 58.40105 * 14 13 12 16 16 C 1.46906 * 110.99861 * 176.81123 * 15 14 13 17 17 C 1.50698 * 109.47100 * 293.80157 * 16 15 14 18 18 H 1.08007 * 120.00100 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00026 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99876 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47285 * 90.00226 * 21 19 17 23 23 H 1.48502 * 109.46979 * 209.99826 * 21 19 17 24 24 H 1.48496 * 109.47421 * 329.99757 * 21 19 17 25 25 C 1.46950 * 110.88255 * 300.67778 * 15 14 13 26 26 C 1.46957 * 111.00108 * 170.00048 * 12 11 9 27 27 C 1.38585 * 120.02210 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46740 * 299.99398 * 1 2 3 30 30 H 1.08992 * 109.47857 * 59.99458 * 1 2 3 31 31 H 1.08008 * 119.95367 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.94273 * 180.23683 * 5 4 3 33 33 H 1.08005 * 119.98193 * 179.74623 * 6 5 4 34 34 H 0.97000 * 119.99608 * 324.92682 * 8 7 6 35 35 H 1.08997 * 109.47137 * 300.00011 * 11 9 8 36 36 H 1.09006 * 109.47010 * 60.00054 * 11 9 8 37 37 H 1.09006 * 109.49126 * 296.77917 * 13 12 11 38 38 H 1.08996 * 109.48923 * 56.84129 * 13 12 11 39 39 H 1.08996 * 109.48716 * 298.42960 * 14 13 12 40 40 H 1.09002 * 109.48556 * 178.36765 * 14 13 12 41 41 H 1.09003 * 109.46957 * 53.79644 * 16 15 14 42 42 H 1.08995 * 109.47208 * 173.80176 * 16 15 14 43 43 H 0.97003 * 119.99257 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.48910 * 299.35650 * 25 15 14 45 45 H 1.08998 * 109.51045 * 179.30210 * 25 15 14 46 46 H 1.09004 * 109.48529 * 303.15776 * 26 12 11 47 47 H 1.08998 * 109.48846 * 63.21642 * 26 12 11 48 48 H 1.08000 * 120.05956 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2904 2.3753 -0.0056 5 6 1.9162 3.6071 -0.0003 6 6 3.2957 3.6840 0.0001 7 6 4.0569 2.5222 -0.0001 8 7 5.4539 2.6000 -0.0003 9 6 6.1800 1.6836 0.6702 10 8 5.6279 0.7446 1.2036 11 6 7.6777 1.8258 0.7572 12 7 8.2311 0.7096 1.5355 13 6 7.7947 0.7773 2.9371 14 6 8.3257 -0.4427 3.6934 15 7 9.7921 -0.4723 3.6023 16 6 10.3456 -1.5885 4.3806 17 6 10.0853 -1.3565 5.8466 18 1 9.5616 -0.4683 6.1682 19 6 10.5168 -2.2775 6.7776 20 7 11.1550 -3.3586 6.3861 21 14 10.1948 -1.9894 8.5950 22 1 8.8907 -2.5935 8.9685 23 1 11.2777 -2.6161 9.3950 24 1 10.1602 -0.5299 8.8664 25 6 10.2286 -0.5400 2.2007 26 6 9.6976 0.6800 1.4443 27 6 3.4298 1.2839 -0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 0.2118 2.3183 -0.0104 32 1 1.3260 4.5115 -0.0008 33 1 3.7825 4.6481 0.0001 34 1 5.8998 3.3134 -0.4830 35 1 8.1026 1.8153 -0.2465 36 1 7.9254 2.7676 1.2468 37 1 8.1833 1.6867 3.3954 38 1 6.7056 0.7854 2.9788 39 1 7.9155 -1.3510 3.2521 40 1 8.0276 -0.3798 4.7400 41 1 9.8701 -2.5189 4.0700 42 1 11.4198 -1.6542 4.2082 43 1 11.4582 -4.0067 7.0411 44 1 9.8400 -1.4495 1.7424 45 1 11.3177 -0.5483 2.1586 46 1 9.9956 0.6171 0.3977 47 1 10.1077 1.5883 1.8856 48 1 4.0194 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:05 Heat of formation + Delta-G solvation = -44.765789 kcal Electronic energy + Delta-G solvation = -28243.520850 eV Core-core repulsion = 24298.270499 eV Total energy + Delta-G solvation = -3945.250351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76637 -40.73286 -39.81341 -38.33285 -36.49783 -35.53906 -34.55628 -31.86759 -31.76530 -31.11956 -30.02638 -28.30752 -27.92775 -25.79748 -24.54029 -23.99057 -23.32281 -22.77799 -21.41092 -20.67310 -19.52620 -18.53600 -18.18635 -17.50855 -17.17298 -16.93060 -16.77804 -16.63868 -16.51574 -16.27992 -15.84388 -15.68990 -15.49525 -15.20192 -14.82252 -14.52108 -14.50576 -14.24087 -13.94053 -13.70510 -13.45957 -13.25056 -13.06688 -12.89672 -12.72326 -12.69007 -12.45877 -12.30598 -12.26672 -12.13920 -12.04896 -11.93685 -11.58903 -11.22368 -11.19832 -10.70276 -10.62837 -9.46242 -9.31326 -9.06839 -9.03716 -8.22577 -6.33102 0.24412 0.46601 1.38856 1.40941 1.52500 1.58121 1.85713 2.38692 2.41855 2.81278 2.96461 3.09275 3.28467 3.71105 3.90572 3.96982 4.13118 4.19367 4.20129 4.24495 4.29088 4.34115 4.37626 4.37819 4.45895 4.50804 4.54388 4.58575 4.68429 4.69854 4.79612 4.88643 4.94485 5.01241 5.06569 5.18681 5.25928 5.28926 5.33460 5.36508 5.49260 5.61520 5.87968 5.92852 5.98958 6.04487 6.29249 6.46567 6.48304 6.60694 6.82170 7.18475 7.36413 8.88902 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002314 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.535492 B =12095.489357 C =13138.301154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.347 6.347 3 C 0.124 3.876 4 C -0.226 4.226 5 C -0.059 4.059 6 C -0.178 4.178 7 C 0.175 3.825 8 N -0.660 5.660 9 C 0.508 3.492 10 O -0.543 6.543 11 C 0.044 3.956 12 N -0.544 5.544 13 C 0.073 3.927 14 C 0.074 3.926 15 N -0.540 5.540 16 C 0.208 3.792 17 C -0.525 4.525 18 H 0.062 0.938 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.049 3.951 26 C 0.074 3.926 27 C -0.190 4.190 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.432 0.568 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.063 0.937 41 H -0.046 1.046 42 H 0.009 0.991 43 H 0.265 0.735 44 H 0.014 0.986 45 H 0.079 0.921 46 H 0.111 0.889 47 H 0.053 0.947 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.750 20.101 -19.388 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.078 3.922 4 C -0.245 4.245 5 C -0.077 4.077 6 C -0.198 4.198 7 C 0.080 3.920 8 N -0.308 5.308 9 C 0.296 3.704 10 O -0.418 6.418 11 C -0.087 4.087 12 N -0.270 5.270 13 C -0.055 4.055 14 C -0.054 4.054 15 N -0.265 5.265 16 C 0.082 3.918 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.079 4.079 26 C -0.053 4.053 27 C -0.211 4.211 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.272 0.728 35 H 0.161 0.839 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.081 0.919 41 H -0.028 1.028 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.071 0.929 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.878 19.076 -18.930 32.843 hybrid contribution 0.077 -0.674 0.895 1.123 sum -18.801 18.402 -18.035 31.896 Atomic orbital electron populations 1.23340 0.76209 1.05379 1.02524 1.86070 1.23778 1.27587 1.88684 1.19054 0.91815 0.85213 0.96131 1.21522 1.01185 0.91811 1.10023 1.21172 0.93960 0.97818 0.94757 1.21174 0.94292 0.97213 1.07114 1.17562 0.83336 0.93021 0.98103 1.43367 1.03816 1.31608 1.52002 1.21345 0.90769 0.81238 0.77010 1.90748 1.73134 1.32030 1.45871 1.22048 0.89408 0.94562 1.02643 1.61735 1.10160 1.43990 1.11123 1.22092 1.00056 0.96205 0.87156 1.21865 0.87900 0.96364 0.99301 1.62269 1.08690 1.45444 1.10108 1.19362 0.93444 0.86080 0.92947 1.21445 1.36619 1.06377 0.91848 0.92023 1.25962 0.94784 0.94643 1.04433 1.70096 1.39846 1.11566 1.36007 0.85348 0.77873 0.78784 0.78410 1.20042 1.20365 1.18694 1.22234 1.00032 0.97454 0.88189 1.22146 0.85303 0.96732 1.01115 1.20458 0.92532 0.98481 1.09669 0.87006 0.91645 0.90914 0.83154 0.81801 0.82309 0.72759 0.83914 0.88654 0.93947 0.90227 0.97863 0.91858 1.02824 0.97274 0.92620 0.96744 0.90226 0.87092 0.92884 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.35 -8.61 10.49 -92.40 -0.97 -9.58 16 3 C 0.12 2.99 6.68 22.49 0.15 3.14 16 4 C -0.23 -3.72 9.04 22.39 0.20 -3.52 16 5 C -0.06 -0.74 10.03 22.24 0.22 -0.52 16 6 C -0.18 -2.47 9.96 22.41 0.22 -2.25 16 7 C 0.17 3.58 6.30 38.14 0.24 3.82 16 8 N -0.66 -10.75 5.33 -303.55 -1.62 -12.37 16 9 C 0.51 11.96 7.37 87.66 0.65 12.61 16 10 O -0.54 -18.97 11.78 -3.07 -0.04 -19.01 16 11 C 0.04 0.80 5.45 85.56 0.47 1.27 16 12 N -0.54 -15.92 4.44 -900.30 -4.00 -19.93 16 13 C 0.07 2.58 5.26 86.31 0.45 3.03 16 14 C 0.07 3.35 5.43 86.31 0.47 3.82 16 15 N -0.54 -25.29 4.70 -900.30 -4.23 -29.52 16 16 C 0.21 11.88 4.72 85.56 0.40 12.29 16 17 C -0.52 -31.35 8.47 25.60 0.22 -31.13 16 18 H 0.06 3.61 7.13 -2.91 -0.02 3.59 16 19 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 20 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 21 Si 0.97 46.01 29.54 68.60 2.03 48.03 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.05 1.87 5.61 86.31 0.48 2.36 16 26 C 0.07 2.01 5.61 86.31 0.48 2.50 16 27 C -0.19 -5.23 8.63 22.49 0.19 -5.04 16 28 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.06 0.73 7.67 -2.39 -0.02 0.71 16 30 H 0.07 0.68 7.65 -2.39 -0.02 0.67 16 31 H 0.15 1.63 6.29 -2.91 -0.02 1.62 16 32 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.43 2.96 8.82 -92.71 -0.82 2.14 16 35 H 0.14 1.58 8.03 -2.39 -0.02 1.56 16 36 H 0.10 1.29 8.12 -2.38 -0.02 1.27 16 37 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.08 2.96 5.85 -2.39 -0.01 2.95 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.06 3.06 6.79 -2.39 -0.02 3.04 16 41 H -0.05 -2.91 8.12 -2.39 -0.02 -2.93 16 42 H 0.01 0.55 8.03 -2.39 -0.02 0.53 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 46 H 0.11 2.19 8.07 -2.38 -0.02 2.17 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.11 3.85 6.22 -2.91 -0.02 3.83 16 Total: -1.00 -84.34 384.72 -1.97 -86.31 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.15 Total: 10.06 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.43 Total: 4.18 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -9.57 Total: -120.01 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.01 Total: -28.58 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -84.34 -1.97 -86.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.547 kcal (2) G-P(sol) polarization free energy of solvation -84.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds