Wall clock time and date at job start Tue Mar 31 2020 17:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99862 * 2 1 4 4 C 1.50698 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.38349 * 120.35159 * 90.00003 * 4 3 2 6 6 N 1.31918 * 121.08357 * 180.02562 * 5 4 3 7 7 C 1.31695 * 121.87847 * 0.02562 * 6 5 4 8 8 C 1.39514 * 120.56896 * 0.02562 * 7 6 5 9 9 C 1.47839 * 120.56075 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99945 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00132 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00028 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47084 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.49367 * 54.93447 * 13 12 11 15 15 C 1.53033 * 109.50013 * 174.99853 * 13 12 11 16 16 C 1.53039 * 109.54135 * 181.35044 * 15 13 12 17 17 C 1.53193 * 109.31182 * 298.63679 * 16 15 13 18 18 N 1.46928 * 108.77558 * 54.63322 * 17 16 15 19 19 C 1.36939 * 120.62948 * 126.36714 * 18 17 16 20 20 H 1.07998 * 119.99697 * 331.91778 * 19 18 17 21 21 C 1.38812 * 119.99948 * 151.91586 * 19 18 17 22 22 N 1.31621 * 119.99722 * 343.21501 * 21 19 18 23 23 Si 1.86797 * 120.00136 * 163.21536 * 21 19 18 24 24 H 1.48497 * 109.47049 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47033 * 119.99925 * 23 21 19 26 26 H 1.48503 * 109.47061 * 240.00183 * 23 21 19 27 27 C 1.46924 * 118.73966 * 306.64301 * 18 17 16 28 28 C 1.38367 * 120.34839 * 270.30865 * 4 3 2 29 29 H 1.09001 * 109.46664 * 59.99466 * 1 2 3 30 30 H 1.08991 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46819 * 299.99961 * 1 2 3 32 32 H 1.09003 * 109.47283 * 59.99963 * 3 2 1 33 33 H 1.09000 * 109.47444 * 300.00062 * 3 2 1 34 34 H 1.08005 * 119.45463 * 0.04483 * 5 4 3 35 35 H 1.08007 * 119.71565 * 179.97438 * 7 6 5 36 36 H 0.97005 * 119.99878 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46999 * 60.00014 * 12 11 9 38 38 H 1.08996 * 109.47327 * 299.99644 * 12 11 9 39 39 H 1.09005 * 109.45711 * 61.32531 * 15 13 12 40 40 H 1.08998 * 109.45089 * 301.36872 * 15 13 12 41 41 H 1.08999 * 109.49578 * 178.68575 * 16 15 13 42 42 H 1.08995 * 109.52302 * 58.60070 * 16 15 13 43 43 H 1.08996 * 109.58580 * 294.84971 * 17 16 15 44 44 H 1.09000 * 109.70506 * 174.49058 * 17 16 15 45 45 H 0.97006 * 119.99968 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.58947 * 173.14529 * 27 18 17 47 47 H 1.09007 * 109.58852 * 293.56956 * 27 18 17 48 48 H 1.07996 * 120.85075 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2099 1.1311 -1.1929 6 7 5.5249 1.0265 -1.2092 7 6 6.2319 0.9697 -0.0996 8 6 5.6037 1.0184 1.1452 9 6 6.3976 0.9552 2.3907 10 8 5.8398 0.9990 3.4698 11 7 7.7399 0.8500 2.3298 12 6 8.5266 0.7879 3.5641 13 6 10.0121 0.6709 3.2167 14 1 10.2977 1.4921 2.5593 15 6 10.8432 0.7314 4.5003 16 6 12.3309 0.6483 4.1512 17 6 12.6140 -0.6862 3.4544 18 7 11.7150 -0.8168 2.2996 19 6 12.2155 -1.0761 1.0516 20 1 13.2129 -0.7533 0.7921 21 6 11.4409 -1.7539 0.1202 22 7 10.3823 -2.4307 0.5124 23 14 11.9008 -1.7054 -1.6896 24 1 13.1234 -0.8817 -1.8677 25 1 12.1587 -3.0859 -2.1719 26 1 10.7853 -1.1093 -2.4680 27 6 10.2694 -0.6578 2.5082 28 6 4.2085 1.1251 1.1950 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.6689 1.1746 -2.1267 35 1 7.3071 0.8837 -0.1537 36 1 8.1851 0.8154 1.4686 37 1 8.2205 -0.0811 4.1466 38 1 8.3598 1.6934 4.1473 39 1 10.5745 -0.1043 5.1465 40 1 10.6435 1.6695 5.0181 41 1 12.9230 0.7150 5.0640 42 1 12.5952 1.4697 3.4853 43 1 12.4368 -1.5064 4.1500 44 1 13.6498 -0.7116 3.1158 45 1 9.8412 -2.9047 -0.1384 46 1 9.7586 -0.6619 1.5454 47 1 9.8970 -1.4758 3.1251 48 1 3.6891 1.1617 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613245188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:47 Heat of formation + Delta-G solvation = -31.940701 kcal Electronic energy + Delta-G solvation = -28580.979061 eV Core-core repulsion = 24636.284847 eV Total energy + Delta-G solvation = -3944.694214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75502 -39.17979 -38.03087 -37.70886 -34.78038 -33.27278 -33.05929 -32.26747 -30.73068 -29.81658 -27.78323 -26.02238 -25.83699 -25.30357 -23.88032 -22.82489 -22.15386 -20.90087 -20.30852 -19.08196 -17.85622 -17.11544 -16.86707 -16.75146 -16.60824 -15.79938 -15.56351 -15.33310 -15.16589 -14.81984 -14.12424 -14.01291 -13.73466 -13.60567 -13.40314 -13.29556 -13.09002 -12.90333 -12.76279 -12.34217 -12.21871 -12.17525 -12.16310 -11.78472 -11.26893 -11.02518 -10.75126 -10.51504 -10.23068 -10.21607 -10.19932 -10.10012 -10.00087 -9.92910 -9.65232 -9.48522 -9.43707 -9.32104 -8.79948 -8.51355 -6.69484 -5.81999 -3.25098 0.51997 0.97207 2.85581 3.25333 3.35431 3.44743 3.46016 3.48382 3.88548 4.17958 4.46693 4.46892 4.54034 4.71203 4.72303 4.88034 4.94864 5.01490 5.06769 5.11598 5.29537 5.32469 5.34460 5.40824 5.51366 5.55015 5.57474 5.77051 5.86406 5.89429 5.98361 6.07150 6.25434 6.27225 6.35422 6.37665 6.47265 6.62873 6.64715 6.74711 6.78854 6.83043 6.99119 7.26750 7.56300 7.65234 7.71594 7.76843 8.30300 8.40918 9.17857 9.80901 10.38344 11.25858 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.003067 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.585591 B = 9125.791320 C =10848.008603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.110 3.890 4 C -0.158 4.158 5 C 0.141 3.859 6 N -0.484 5.484 7 C 0.147 3.853 8 C -0.184 4.184 9 C 0.562 3.438 10 O -0.544 6.544 11 N -0.711 5.711 12 C 0.131 3.869 13 C -0.129 4.129 14 H 0.070 0.930 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.143 3.857 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.287 1.287 27 C 0.178 3.822 28 C 0.003 3.997 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.405 0.595 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.086 0.914 47 H 0.019 0.981 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 9.798 0.819 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.033 3.967 4 C -0.160 4.160 5 C -0.016 4.016 6 N -0.192 5.192 7 C -0.011 4.011 8 C -0.189 4.189 9 C 0.348 3.652 10 O -0.423 6.423 11 N -0.362 5.362 12 C 0.007 3.993 13 C -0.149 4.149 14 H 0.089 0.911 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.052 3.948 28 C -0.023 4.023 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.037 0.963 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.019 9.508 0.683 17.789 hybrid contribution -0.230 0.087 -0.574 0.625 sum -15.249 9.595 0.109 18.017 Atomic orbital electron populations 1.22777 0.80690 1.03076 1.00049 1.88008 1.19840 1.27105 1.95420 1.21210 0.88649 0.85414 1.01461 1.20541 0.95768 1.05459 0.94279 1.22906 0.90023 0.91209 0.97492 1.67795 1.07758 1.12707 1.30923 1.23187 1.00734 0.90445 0.86740 1.21057 0.95093 1.07641 0.95139 1.17934 0.82305 0.76823 0.88126 1.90748 1.71089 1.50872 1.29611 1.45971 1.05934 1.73130 1.11120 1.21452 0.90839 1.01494 0.85488 1.22086 0.91407 1.03142 0.98301 0.91149 1.21328 0.95627 1.00439 0.96401 1.21989 0.95345 1.00496 0.99396 1.20932 0.94483 0.93142 0.89770 1.44016 1.01353 1.82411 1.03658 1.19221 1.00804 1.29947 0.88220 0.91675 1.25043 0.98832 0.96882 0.98817 1.70045 1.18835 1.32946 1.32656 0.86294 0.77971 0.77423 0.85553 1.20302 1.21730 1.21320 1.20716 0.85291 0.89576 0.99230 1.21592 0.92455 0.89474 0.98789 0.93917 0.89395 0.93886 0.91920 0.91800 0.82286 0.81843 0.75853 0.91411 0.92022 0.92424 0.93374 0.93052 0.92410 0.96503 0.92896 0.93641 0.89549 0.96290 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.99 10.69 -35.23 -0.38 -4.37 16 3 C 0.11 0.94 6.08 36.00 0.22 1.15 16 4 C -0.16 -1.76 5.52 -104.53 -0.58 -2.34 16 5 C 0.14 1.63 10.85 -17.47 -0.19 1.44 16 6 N -0.48 -6.84 10.35 -12.91 -0.13 -6.97 16 7 C 0.15 2.08 10.71 -17.13 -0.18 1.90 16 8 C -0.18 -2.65 5.89 -104.83 -0.62 -3.26 16 9 C 0.56 9.16 7.78 -12.33 -0.10 9.07 16 10 O -0.54 -10.21 16.42 5.32 0.09 -10.13 16 11 N -0.71 -11.21 5.28 -61.25 -0.32 -11.54 16 12 C 0.13 2.11 5.07 -4.04 -0.02 2.09 16 13 C -0.13 -2.24 2.36 -90.72 -0.21 -2.46 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 15 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 16 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 17 C 0.14 2.92 6.52 -3.71 -0.02 2.89 16 18 N -0.59 -14.24 3.00 -172.58 -0.52 -14.76 16 19 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 20 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.16 11.20 55.49 0.62 -24.53 16 23 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.18 3.95 4.36 -3.93 -0.02 3.93 16 28 C 0.00 0.04 9.39 -38.87 -0.37 -0.32 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.16 2.19 6.42 -52.48 -0.34 1.85 16 36 H 0.40 6.16 5.76 -40.82 -0.24 5.92 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.09 2.08 5.26 -51.93 -0.27 1.81 16 47 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 48 H 0.15 1.79 7.74 -52.49 -0.41 1.39 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -32.11 390.41 -8.84 -40.95 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.55 Total: 4.91 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.50 Total: 4.47 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.35 Total: -57.80 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.29 Total: -14.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.11 -8.84 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613245188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.008 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds