Wall clock time and date at job start Tue Mar 31 2020 17:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99862 * 2 1 4 4 C 1.50698 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.38349 * 120.35159 * 90.00003 * 4 3 2 6 6 N 1.31918 * 121.08357 * 180.02562 * 5 4 3 7 7 C 1.31695 * 121.87847 * 0.02562 * 6 5 4 8 8 C 1.39514 * 120.56896 * 0.02562 * 7 6 5 9 9 C 1.47839 * 120.56075 * 180.02562 * 8 7 6 10 10 O 1.21551 * 119.99945 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00132 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00028 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47084 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.49367 * 54.93447 * 13 12 11 15 15 C 1.53033 * 109.50013 * 174.99853 * 13 12 11 16 16 C 1.53039 * 109.54135 * 181.35044 * 15 13 12 17 17 C 1.53193 * 109.31182 * 298.63679 * 16 15 13 18 18 N 1.46928 * 108.77558 * 54.63322 * 17 16 15 19 19 C 1.36939 * 120.62948 * 126.36714 * 18 17 16 20 20 H 1.07998 * 119.99697 * 331.91778 * 19 18 17 21 21 C 1.38812 * 119.99948 * 151.91586 * 19 18 17 22 22 N 1.31621 * 119.99722 * 343.21501 * 21 19 18 23 23 Si 1.86797 * 120.00136 * 163.21536 * 21 19 18 24 24 H 1.48497 * 109.47049 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47033 * 119.99925 * 23 21 19 26 26 H 1.48503 * 109.47061 * 240.00183 * 23 21 19 27 27 C 1.46924 * 118.73966 * 306.64301 * 18 17 16 28 28 C 1.38367 * 120.34839 * 270.30865 * 4 3 2 29 29 H 1.09001 * 109.46664 * 59.99466 * 1 2 3 30 30 H 1.08991 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46819 * 299.99961 * 1 2 3 32 32 H 1.09003 * 109.47283 * 59.99963 * 3 2 1 33 33 H 1.09000 * 109.47444 * 300.00062 * 3 2 1 34 34 H 1.08005 * 119.45463 * 0.04483 * 5 4 3 35 35 H 1.08007 * 119.71565 * 179.97438 * 7 6 5 36 36 H 0.97005 * 119.99878 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46999 * 60.00014 * 12 11 9 38 38 H 1.08996 * 109.47327 * 299.99644 * 12 11 9 39 39 H 1.09005 * 109.45711 * 61.32531 * 15 13 12 40 40 H 1.08998 * 109.45089 * 301.36872 * 15 13 12 41 41 H 1.08999 * 109.49578 * 178.68575 * 16 15 13 42 42 H 1.08995 * 109.52302 * 58.60070 * 16 15 13 43 43 H 1.08996 * 109.58580 * 294.84971 * 17 16 15 44 44 H 1.09000 * 109.70506 * 174.49058 * 17 16 15 45 45 H 0.97006 * 119.99968 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.58947 * 173.14529 * 27 18 17 47 47 H 1.09007 * 109.58852 * 293.56956 * 27 18 17 48 48 H 1.07996 * 120.85075 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2099 1.1311 -1.1929 6 7 5.5249 1.0265 -1.2092 7 6 6.2319 0.9697 -0.0996 8 6 5.6037 1.0184 1.1452 9 6 6.3976 0.9552 2.3907 10 8 5.8398 0.9990 3.4698 11 7 7.7399 0.8500 2.3298 12 6 8.5266 0.7879 3.5641 13 6 10.0121 0.6709 3.2167 14 1 10.2977 1.4921 2.5593 15 6 10.8432 0.7314 4.5003 16 6 12.3309 0.6483 4.1512 17 6 12.6140 -0.6862 3.4544 18 7 11.7150 -0.8168 2.2996 19 6 12.2155 -1.0761 1.0516 20 1 13.2129 -0.7533 0.7921 21 6 11.4409 -1.7539 0.1202 22 7 10.3823 -2.4307 0.5124 23 14 11.9008 -1.7054 -1.6896 24 1 13.1234 -0.8817 -1.8677 25 1 12.1587 -3.0859 -2.1719 26 1 10.7853 -1.1093 -2.4680 27 6 10.2694 -0.6578 2.5082 28 6 4.2085 1.1251 1.1950 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.6689 1.1746 -2.1267 35 1 7.3071 0.8837 -0.1537 36 1 8.1851 0.8154 1.4686 37 1 8.2205 -0.0811 4.1466 38 1 8.3598 1.6934 4.1473 39 1 10.5745 -0.1043 5.1465 40 1 10.6435 1.6695 5.0181 41 1 12.9230 0.7150 5.0640 42 1 12.5952 1.4697 3.4853 43 1 12.4368 -1.5064 4.1500 44 1 13.6498 -0.7116 3.1158 45 1 9.8412 -2.9047 -0.1384 46 1 9.7586 -0.6619 1.5454 47 1 9.8970 -1.4758 3.1251 48 1 3.6891 1.1617 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613245188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:46 Heat of formation + Delta-G solvation = -52.927998 kcal Electronic energy + Delta-G solvation = -28581.889139 eV Core-core repulsion = 24636.284847 eV Total energy + Delta-G solvation = -3945.604291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82727 -40.40986 -39.29390 -38.68767 -36.25160 -34.87811 -34.10098 -33.45499 -32.27787 -31.47100 -28.46381 -27.45876 -27.09297 -26.50852 -25.06172 -23.91491 -23.71801 -22.38112 -21.56789 -20.59406 -19.02168 -18.64625 -18.12800 -17.69229 -17.38956 -16.94217 -16.76033 -16.46175 -16.35087 -16.10364 -15.76725 -15.42946 -15.11756 -14.97515 -14.69853 -14.54101 -14.26222 -14.02908 -14.00545 -13.76151 -13.60982 -13.34850 -12.94973 -12.89490 -12.88723 -12.55906 -12.36663 -12.20343 -11.96513 -11.78628 -11.55444 -11.52374 -11.15423 -11.08543 -11.03738 -10.73189 -10.54571 -10.52040 -10.35975 -10.07333 -8.64579 -7.85117 -5.30909 -0.51198 -0.01851 1.46857 1.50681 1.59513 1.68708 2.04263 2.52438 2.56437 3.04511 3.20904 3.28030 3.58289 3.61213 3.67975 3.71960 3.81152 3.99064 4.00496 4.08641 4.15019 4.26549 4.36654 4.46887 4.52799 4.55187 4.56857 4.62435 4.64161 4.80868 4.85758 4.88960 4.89603 4.90284 5.02603 5.04737 5.16566 5.21384 5.33077 5.39557 5.40542 5.46217 5.56787 5.68463 5.78959 6.18145 6.36640 6.40739 6.70595 7.01450 7.17290 7.88289 8.40373 9.19914 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.003067 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.585591 B = 9125.791320 C =10848.008603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.109 3.891 4 C -0.150 4.150 5 C 0.142 3.858 6 N -0.506 5.506 7 C 0.139 3.861 8 C -0.198 4.198 9 C 0.563 3.437 10 O -0.573 6.573 11 N -0.710 5.710 12 C 0.138 3.862 13 C -0.112 4.112 14 H 0.073 0.927 15 C -0.098 4.098 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.260 4.260 20 H 0.064 0.936 21 C -0.044 4.044 22 N -0.929 5.929 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.297 1.297 26 H -0.286 1.286 27 C 0.187 3.813 28 C -0.003 4.003 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.193 0.807 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.009 0.991 44 H 0.051 0.949 45 H 0.248 0.752 46 H 0.063 0.937 47 H -0.014 1.014 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.024 11.643 0.563 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.033 3.967 4 C -0.152 4.152 5 C -0.015 4.015 6 N -0.214 5.214 7 C -0.019 4.019 8 C -0.203 4.203 9 C 0.350 3.650 10 O -0.454 6.454 11 N -0.360 5.360 12 C 0.014 3.986 13 C -0.133 4.133 14 H 0.091 0.909 15 C -0.136 4.136 16 C -0.161 4.161 17 C 0.010 3.990 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.240 4.240 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.193 1.193 25 H -0.225 1.225 26 H -0.212 1.212 27 C 0.061 3.939 28 C -0.029 4.029 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.209 0.791 35 H 0.179 0.821 36 H 0.244 0.756 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.004 0.996 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.896 11.374 0.442 19.551 hybrid contribution 0.023 -0.539 -0.490 0.729 sum -15.873 10.835 -0.048 19.219 Atomic orbital electron populations 1.22953 0.78894 1.03792 1.01416 1.87949 1.21879 1.28090 1.95732 1.21343 0.86528 0.85277 1.03595 1.20839 0.97476 1.03603 0.93284 1.23482 0.89304 0.89605 0.99067 1.67816 1.09176 1.13623 1.30816 1.23154 1.00850 0.90996 0.86894 1.20927 0.95705 1.09465 0.94217 1.18207 0.82298 0.75988 0.88465 1.90719 1.71530 1.52445 1.30719 1.45993 1.06045 1.72827 1.11176 1.21372 0.89864 1.01753 0.85631 1.21846 0.92653 0.99918 0.98857 0.90907 1.21356 0.94712 1.02134 0.95445 1.21869 0.96286 0.97647 1.00254 1.21122 0.93797 0.95292 0.88802 1.44313 1.02406 1.82626 1.04075 1.19496 1.00782 1.29228 0.89503 0.91805 1.25693 0.99073 0.97001 1.02224 1.70196 1.19892 1.34052 1.33383 0.85347 0.77894 0.76856 0.81206 1.19266 1.22474 1.21244 1.20512 0.84298 0.91131 0.97945 1.21765 0.91910 0.89406 0.99838 0.92150 0.89134 0.92877 0.90566 0.88909 0.79070 0.82122 0.75630 0.92791 0.90092 0.92679 0.89966 0.89853 0.92369 0.97284 0.93051 0.94262 0.91916 0.99568 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.83 10.69 -148.98 -1.59 -9.42 16 3 C 0.11 1.58 6.08 71.24 0.43 2.01 16 4 C -0.15 -3.11 5.52 -19.81 -0.11 -3.22 16 5 C 0.14 3.06 10.85 84.71 0.92 3.98 16 6 N -0.51 -14.06 10.35 -194.76 -2.01 -16.07 16 7 C 0.14 4.01 10.71 85.02 0.91 4.92 16 8 C -0.20 -5.79 5.89 -20.00 -0.12 -5.90 16 9 C 0.56 18.75 7.78 86.78 0.68 19.42 16 10 O -0.57 -21.79 16.42 -3.88 -0.06 -21.86 16 11 N -0.71 -22.90 5.28 -465.97 -2.46 -25.36 16 12 C 0.14 4.39 5.07 86.38 0.44 4.83 16 13 C -0.11 -3.85 2.36 -10.86 -0.03 -3.88 16 14 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 15 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 16 C -0.12 -3.77 6.08 30.67 0.19 -3.58 16 17 C 0.14 5.47 6.52 86.36 0.56 6.03 16 18 N -0.61 -29.81 3.00 -699.92 -2.10 -31.91 16 19 C -0.26 -13.94 9.58 84.03 0.81 -13.14 16 20 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 21 C -0.04 -2.40 4.92 84.86 0.42 -1.99 16 22 N -0.93 -53.60 11.20 21.65 0.24 -53.36 16 23 Si 0.96 44.08 29.59 68.60 2.03 46.11 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 27 C 0.19 8.54 4.36 86.22 0.38 8.91 16 28 C 0.00 -0.07 9.39 22.73 0.21 0.14 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 33 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 34 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.16 4.54 6.42 -2.91 -0.02 4.52 16 36 H 0.41 12.87 5.76 -92.70 -0.53 12.33 16 37 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.05 2.04 7.93 -2.39 -0.02 2.03 16 45 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 46 H 0.06 3.15 5.26 -2.39 -0.01 3.13 16 47 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 48 H 0.15 3.63 7.74 -2.91 -0.02 3.61 16 Total: -1.00 -70.59 390.41 1.56 -69.04 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.42 Total: 25.52 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.09 Total: 17.31 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.33 Total: -126.70 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.66 Total: -31.27 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.59 1.56 -69.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613245188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.108 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds