Wall clock time and date at job start Tue Mar 31 2020 17:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 O 1.41595 * 120.00031 * 2 1 4 4 C 1.42900 * 113.99936 * 269.99859 * 3 2 1 5 5 C 1.50703 * 109.46946 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00194 * 269.72861 * 5 4 3 7 7 C 1.38231 * 119.99760 * 179.76340 * 6 5 4 8 8 C 1.38240 * 120.00140 * 0.50962 * 7 6 5 9 9 C 1.38228 * 120.00069 * 359.74811 * 8 7 6 10 10 C 1.38237 * 119.99993 * 359.97438 * 9 8 7 11 11 C 1.34778 * 119.99545 * 180.02562 * 2 1 3 12 12 O 1.21585 * 120.00569 * 359.97438 * 11 2 1 13 13 N 1.34781 * 119.99776 * 180.02562 * 11 2 1 14 14 C 1.46500 * 119.99994 * 179.97438 * 13 11 2 15 15 C 1.53076 * 109.43981 * 84.79590 * 14 13 11 16 16 C 1.53183 * 109.29478 * 181.23571 * 15 14 13 17 17 N 1.46930 * 108.89468 * 305.57480 * 16 15 14 18 18 C 1.36937 * 120.63259 * 233.51494 * 17 16 15 19 19 H 1.08000 * 119.99761 * 151.83401 * 18 17 16 20 20 C 1.38806 * 120.00219 * 331.83653 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.07619 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07294 * 20 18 17 23 23 H 1.48506 * 109.46812 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47258 * 119.99807 * 22 20 18 25 25 H 1.48499 * 109.47344 * 240.00342 * 22 20 18 26 26 C 1.46925 * 118.73328 * 53.53726 * 17 16 15 27 27 C 1.53033 * 109.45902 * 204.99610 * 14 13 11 28 28 H 1.08999 * 109.47016 * 269.99836 * 1 2 3 29 29 H 1.09000 * 109.46718 * 29.99961 * 1 2 3 30 30 H 1.09005 * 109.47068 * 149.99875 * 1 2 3 31 31 H 1.08997 * 109.47013 * 299.99899 * 4 3 2 32 32 H 1.08997 * 109.47153 * 60.00329 * 4 3 2 33 33 H 1.07991 * 119.99810 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.00022 * 180.22567 * 7 6 5 35 35 H 1.08005 * 119.99663 * 179.71704 * 8 7 6 36 36 H 1.08003 * 120.00475 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.00262 * 179.97438 * 10 9 8 38 38 H 0.97007 * 119.99982 * 359.97438 * 13 11 2 39 39 H 1.08994 * 109.45870 * 324.97548 * 14 13 11 40 40 H 1.09005 * 109.39190 * 61.35477 * 15 14 13 41 41 H 1.09004 * 109.62337 * 301.25270 * 15 14 13 42 42 H 1.09005 * 109.58619 * 185.72200 * 16 15 14 43 43 H 1.08998 * 109.58733 * 65.43770 * 16 15 14 44 44 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.58688 * 66.18006 * 26 17 16 46 46 H 1.08996 * 109.58570 * 186.45714 * 26 17 16 47 47 H 1.09003 * 109.49897 * 58.68032 * 27 14 13 48 48 H 1.09000 * 109.52987 * 298.59684 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1730 1.2262 0.0000 4 6 2.4636 1.7296 -1.3055 5 6 3.2143 3.0309 -1.1864 6 6 2.5218 4.2264 -1.1377 7 6 3.2101 5.4196 -1.0236 8 6 4.5914 5.4183 -0.9688 9 6 5.2841 4.2233 -1.0229 10 6 4.5955 3.0296 -1.1312 11 6 2.1388 -1.1673 -0.0005 12 8 1.5309 -2.2202 -0.0005 13 7 3.4866 -1.1673 0.0000 14 6 4.2191 -2.4361 0.0000 15 6 4.3610 -2.9424 -1.4376 16 6 5.1001 -4.2842 -1.4310 17 7 6.3739 -4.1221 -0.7170 18 6 7.5549 -4.4892 -1.3050 19 1 8.4729 -3.9913 -1.0295 20 6 7.5723 -5.5011 -2.2550 21 7 6.5520 -6.3264 -2.3561 22 14 9.0436 -5.6915 -3.3901 23 1 10.0502 -4.6461 -3.0751 24 1 9.6478 -7.0341 -3.1964 25 1 8.6027 -5.5458 -4.8006 26 6 6.3564 -3.5593 0.6400 27 6 5.6063 -2.2239 0.6103 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 3.0736 1.0060 -1.8463 32 1 1.5321 1.8961 -1.8464 33 1 1.4429 4.2277 -1.1846 34 1 2.6690 6.3534 -0.9819 35 1 5.1294 6.3510 -0.8843 36 1 6.3633 4.2222 -0.9805 37 1 5.1367 2.0959 -1.1739 38 1 3.9717 -0.3272 0.0004 39 1 3.6715 -3.1714 0.5894 40 1 4.9276 -2.2177 -2.0223 41 1 3.3728 -3.0735 -1.8787 42 1 5.2935 -4.5998 -2.4563 43 1 4.4911 -5.0343 -0.9265 44 1 6.5642 -7.0338 -3.0197 45 1 5.8489 -4.2485 1.3150 46 1 7.3787 -3.3991 0.9824 47 1 5.5024 -1.8423 1.6261 48 1 6.1638 -1.5069 0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779629138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:26 Heat of formation + Delta-G solvation = 10.108178 kcal Electronic energy + Delta-G solvation = -28941.595043 eV Core-core repulsion = 24998.724206 eV Total energy + Delta-G solvation = -3942.870838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40180 -40.24851 -39.25007 -38.29247 -36.11531 -34.47888 -33.89367 -32.33184 -31.82630 -31.77896 -31.25681 -28.02679 -27.13134 -26.27299 -23.92570 -23.60018 -23.51338 -22.33202 -21.72990 -21.11215 -19.86925 -18.77156 -18.06004 -17.96283 -17.00313 -16.91588 -16.57557 -16.34469 -16.10110 -15.92589 -15.37396 -15.33731 -15.17288 -14.80927 -14.73333 -14.49919 -14.25488 -14.12872 -13.93632 -13.92468 -13.45354 -13.22682 -13.14690 -13.01769 -12.67321 -12.59167 -12.15418 -12.11701 -12.03132 -12.00662 -11.87840 -11.72960 -11.55976 -11.38788 -11.15083 -10.59940 -10.40233 -9.94663 -9.84659 -9.65984 -8.71177 -7.87017 -5.33422 0.15810 0.47900 0.84795 1.47449 1.49030 1.59874 1.89473 2.19831 2.51968 2.86236 3.29026 3.59408 3.67104 3.79905 3.82724 3.88564 4.06280 4.12876 4.23468 4.27556 4.30244 4.31828 4.45165 4.46048 4.56136 4.60996 4.65831 4.71651 4.77085 4.82086 4.86479 5.02201 5.02606 5.06216 5.11630 5.13203 5.30466 5.32262 5.43787 5.51991 5.53143 5.59182 5.60188 5.64311 5.69678 5.86231 6.06087 6.39176 6.86605 7.13806 7.35312 7.84392 8.37467 9.20321 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.002959 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.926922 B = 9460.146830 C =11064.947134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.497 5.497 3 O -0.139 6.139 4 C 0.066 3.934 5 C -0.105 4.105 6 C -0.104 4.104 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.132 4.132 10 C -0.112 4.112 11 C 0.707 3.293 12 O -0.610 6.610 13 N -0.720 5.720 14 C 0.178 3.822 15 C -0.129 4.129 16 C 0.184 3.816 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.074 0.926 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.143 3.857 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.056 0.944 43 H -0.009 1.009 44 H 0.249 0.751 45 H 0.013 0.987 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 26.788 3.397 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.279 5.279 3 O -0.145 6.145 4 C -0.011 4.011 5 C -0.106 4.106 6 C -0.122 4.122 7 C -0.146 4.146 8 C -0.133 4.133 9 C -0.150 4.150 10 C -0.131 4.131 11 C 0.409 3.591 12 O -0.490 6.490 13 N -0.374 5.374 14 C 0.073 3.927 15 C -0.169 4.169 16 C 0.057 3.943 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.249 4.249 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.161 4.161 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.244 0.756 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.009 0.991 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.507 25.979 3.500 27.885 hybrid contribution 0.766 -0.455 -1.013 1.349 sum -8.741 25.524 2.486 27.094 Atomic orbital electron populations 1.21961 0.73773 1.04432 1.03643 1.49158 1.04823 0.94981 1.78912 1.90735 1.73107 1.24379 1.26247 1.21996 0.99904 0.93129 0.86084 1.19466 0.93789 0.93224 1.04165 1.21314 1.00865 0.91770 0.98265 1.21489 0.94734 0.98654 0.99757 1.21592 0.94820 0.98866 0.98045 1.21450 1.01148 0.92368 0.99995 1.21315 0.93711 0.99335 0.98697 1.16044 0.82735 0.82565 0.77734 1.90962 1.68568 1.29352 1.60160 1.45219 1.03974 1.10203 1.78034 1.20622 0.92197 0.83914 0.95974 1.22324 0.98931 0.98899 0.96780 1.20454 0.85129 0.91626 0.97075 1.44354 1.03048 1.73288 1.12563 1.19591 0.87883 1.12422 1.19088 0.90869 1.25873 1.00295 0.95391 1.03377 1.70212 1.33608 1.18033 1.36588 0.85188 0.79333 0.77383 0.78422 1.18608 1.22094 1.21884 1.21024 0.98902 0.92379 0.85981 1.22133 0.93515 0.99082 1.01333 0.91108 0.87791 0.90374 0.92139 0.89909 0.84361 0.83525 0.83726 0.84351 0.85682 0.75647 0.92193 0.92200 0.93513 0.92584 0.99113 0.94172 0.96870 0.91272 0.89378 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 10.82 127.77 1.38 3.24 16 2 N -0.50 -12.21 3.36 -500.18 -1.68 -13.89 16 3 O -0.14 -2.98 10.17 -38.77 -0.39 -3.37 16 4 C 0.07 1.18 6.45 71.24 0.46 1.64 16 5 C -0.10 -1.78 5.51 -19.86 -0.11 -1.89 16 6 C -0.10 -1.46 9.70 22.27 0.22 -1.24 16 7 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 8 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 9 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 10 C -0.11 -1.93 9.70 22.27 0.22 -1.72 16 11 C 0.71 22.64 8.37 179.05 1.50 24.14 16 12 O -0.61 -24.36 15.58 -3.98 -0.06 -24.42 16 13 N -0.72 -21.47 5.05 -457.64 -2.31 -23.78 16 14 C 0.18 6.32 2.41 45.03 0.11 6.42 16 15 C -0.13 -5.28 5.66 30.68 0.17 -5.10 16 16 C 0.18 9.35 5.30 86.36 0.46 9.81 16 17 N -0.61 -30.82 3.00 -699.11 -2.09 -32.92 16 18 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 19 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 20 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 21 N -0.94 -56.82 11.20 21.65 0.24 -56.58 16 22 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 C 0.14 5.83 6.52 86.36 0.56 6.39 16 27 C -0.12 -3.89 5.55 30.67 0.17 -3.72 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.62 7.42 -2.38 -0.02 1.61 16 31 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 33 H 0.14 1.41 8.06 -2.92 -0.02 1.39 16 34 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.41 10.21 7.67 -92.70 -0.71 9.50 16 39 H 0.06 2.44 7.58 -2.39 -0.02 2.43 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.06 3.20 6.06 -2.38 -0.01 3.19 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 47 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -72.17 394.33 3.00 -69.18 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.24 Total: 21.10 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 7.03 Total: 17.69 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.84 Total: -127.16 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.46 Total: -27.80 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.17 3.00 -69.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779629138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.287 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds