Wall clock time and date at job start Tue Mar 31 2020 18:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99865 * 2 1 4 4 O 1.20824 * 120.00241 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99447 * 180.02562 * 3 2 1 6 6 N 1.46910 * 109.46773 * 180.02562 * 5 3 2 7 7 C 1.46955 * 110.99728 * 170.00141 * 6 5 3 8 8 C 1.53051 * 109.36374 * 183.19057 * 7 6 5 9 9 N 1.46963 * 109.36220 * 301.59926 * 8 7 6 10 10 C 1.39997 * 110.99806 * 183.18806 * 9 8 7 11 11 C 1.38865 * 119.99705 * 179.97438 * 10 9 8 12 12 C 1.38095 * 119.99650 * 180.02562 * 11 10 9 13 13 C 1.38860 * 120.00054 * 359.97438 * 12 11 10 14 14 N 1.40002 * 119.99648 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99701 * 179.72448 * 14 13 12 16 16 C 1.50703 * 109.47138 * 180.27839 * 15 14 13 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99572 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00297 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99858 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99924 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99778 * 20 18 16 24 24 C 1.38859 * 120.00159 * 0.25472 * 13 12 11 25 25 C 1.38092 * 119.99577 * 359.51534 * 24 13 12 26 26 C 1.46960 * 110.88209 * 59.31833 * 9 8 7 27 27 C 1.46953 * 110.99995 * 293.80187 * 6 5 3 28 28 H 1.09000 * 109.47324 * 59.99391 * 1 2 3 29 29 H 1.08996 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46798 * 299.99503 * 1 2 3 31 31 H 1.08999 * 109.46889 * 60.00720 * 5 3 2 32 32 H 1.08997 * 109.47661 * 299.99880 * 5 3 2 33 33 H 1.09005 * 109.49001 * 63.22017 * 7 6 5 34 34 H 1.09005 * 109.48856 * 303.15557 * 7 6 5 35 35 H 1.08992 * 109.49049 * 181.63483 * 8 7 6 36 36 H 1.08993 * 109.48798 * 61.56369 * 8 7 6 37 37 H 1.07990 * 120.00143 * 0.02562 * 11 10 9 38 38 H 1.08002 * 119.99545 * 180.02562 * 12 11 10 39 39 H 0.97001 * 120.00450 * 0.02562 * 14 13 12 40 40 H 1.09009 * 109.47454 * 300.27414 * 15 14 13 41 41 H 1.08998 * 109.47492 * 60.27709 * 15 14 13 42 42 H 0.97001 * 119.99511 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99979 * 179.72429 * 24 13 12 44 44 H 1.08002 * 119.99463 * 180.25251 * 25 24 13 45 45 H 1.08999 * 109.48262 * 60.64450 * 26 9 8 46 46 H 1.08995 * 109.48866 * 180.71313 * 26 9 8 47 47 H 1.09006 * 109.48684 * 296.77870 * 27 6 5 48 48 H 1.08998 * 109.48924 * 56.82121 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9829 2.6835 0.0002 7 6 5.4280 2.8052 0.2378 8 6 5.8074 4.2862 0.3103 9 7 5.4252 4.9491 -0.9444 10 6 5.8222 6.2916 -0.9436 11 6 5.5536 7.0956 -2.0435 12 6 5.9457 8.4197 -2.0430 13 6 6.6080 8.9473 -0.9424 14 7 7.0059 10.2896 -0.9422 15 6 7.6992 10.8478 0.2214 16 6 8.0090 12.3014 -0.0280 17 1 7.7188 12.7631 -0.9602 18 6 8.6638 13.0415 0.9335 19 7 8.9346 14.3100 0.7155 20 14 9.1663 12.2428 2.5456 21 1 10.5305 11.6717 2.4110 22 1 9.1606 13.2617 3.6258 23 1 8.2073 11.1598 2.8815 24 6 6.8807 8.1421 0.1555 25 6 6.4844 6.8192 0.1569 26 6 3.9801 4.8273 -1.1821 27 6 3.6007 3.3464 -1.2545 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.9556 0.7809 -0.8909 32 1 3.9565 0.7805 0.8891 33 1 5.9721 2.3299 -0.5784 34 1 5.6841 2.3178 1.1785 35 1 6.8833 4.3792 0.4576 36 1 5.2841 4.7553 1.1434 37 1 5.0382 6.6854 -2.8993 38 1 5.7365 9.0452 -2.8983 39 1 6.8187 10.8512 -1.7106 40 1 7.0624 10.7579 1.1015 41 1 8.6278 10.3017 0.3876 42 1 9.3949 14.8308 1.3921 43 1 7.3997 8.5512 1.0096 44 1 6.6930 6.1940 1.0125 45 1 3.4361 5.3025 -0.3658 46 1 3.7240 5.3148 -2.1227 47 1 4.1241 2.8772 -2.0877 48 1 2.5248 3.2530 -1.4020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819437876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:35 Heat of formation + Delta-G solvation = -47.595091 kcal Electronic energy + Delta-G solvation = -27857.187903 eV Core-core repulsion = 23911.814864 eV Total energy + Delta-G solvation = -3945.373039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68219 -41.07133 -39.51384 -37.76716 -37.01062 -35.58526 -34.30342 -32.54924 -31.45003 -31.25005 -30.05498 -28.59730 -27.25855 -25.52858 -25.28795 -24.06485 -22.82054 -21.93287 -21.74486 -20.75401 -19.41478 -18.64852 -18.38703 -17.59964 -17.57109 -17.34438 -16.99407 -16.22907 -16.15947 -15.92260 -15.68183 -15.44238 -15.18670 -15.05180 -14.98700 -14.63645 -14.48226 -14.29085 -14.18829 -13.96625 -13.51493 -13.40131 -12.99307 -12.96825 -12.87219 -12.69978 -12.60293 -12.35029 -12.21882 -11.98063 -11.90111 -11.75247 -11.69383 -11.56397 -11.36291 -11.09558 -10.83274 -9.83146 -9.65408 -9.38840 -8.39569 -7.82453 -6.47137 0.56133 0.75900 1.19511 1.33755 1.34949 1.46324 1.63596 2.28268 2.73790 2.86368 2.88672 2.95524 3.11872 3.76070 3.83382 3.98942 4.08993 4.12874 4.15314 4.28248 4.29628 4.32653 4.34003 4.43481 4.48331 4.52707 4.56916 4.62333 4.70543 4.72401 4.79074 4.84356 4.88131 4.93703 5.03168 5.08641 5.16806 5.27839 5.30532 5.38315 5.41378 5.57645 5.77382 5.85283 5.92661 6.00113 6.17990 6.43869 6.51842 6.70494 6.78542 7.06633 7.22807 8.76251 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.001899 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.682686 B =14743.645432 C =15080.243094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.525 6.525 5 C 0.066 3.934 6 N -0.547 5.547 7 C 0.066 3.934 8 C 0.049 3.951 9 N -0.484 5.484 10 C 0.033 3.967 11 C -0.084 4.084 12 C -0.186 4.186 13 C 0.185 3.815 14 N -0.738 5.738 15 C 0.241 3.759 16 C -0.551 4.551 17 H 0.043 0.957 18 C 0.018 3.982 19 N -0.938 5.938 20 Si 0.948 3.052 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.249 1.249 24 C -0.198 4.198 25 C -0.114 4.114 26 C 0.065 3.935 27 C 0.059 3.941 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.396 0.604 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.271 0.729 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.029 0.971 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 -34.973 -1.498 37.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.414 6.414 5 C -0.062 4.062 6 N -0.273 5.273 7 C -0.061 4.061 8 C -0.078 4.078 9 N -0.201 5.201 10 C -0.065 4.065 11 C -0.105 4.105 12 C -0.209 4.209 13 C 0.080 3.920 14 N -0.365 5.365 15 C 0.117 3.883 16 C -0.588 4.588 17 H 0.062 0.938 18 C -0.182 4.182 19 N -0.577 5.577 20 Si 0.770 3.230 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.172 1.172 24 C -0.222 4.222 25 C -0.135 4.135 26 C -0.062 4.062 27 C -0.069 4.069 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.230 0.770 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.157 0.843 45 H 0.047 0.953 46 H 0.107 0.893 47 H 0.069 0.931 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.702 -34.517 -1.243 36.801 hybrid contribution 0.046 1.113 0.256 1.143 sum -12.656 -33.404 -0.987 35.735 Atomic orbital electron populations 1.23486 0.74971 1.05539 1.02266 1.86481 1.24775 1.32912 1.83958 1.24144 0.92871 0.81132 0.71701 1.90667 1.67779 1.37292 1.45650 1.21681 0.86712 0.90718 1.07080 1.61761 1.16720 1.12870 1.35996 1.22236 0.85312 0.95381 1.03142 1.22391 1.01561 0.94341 0.89549 1.59647 1.14996 1.10781 1.34688 1.18695 1.03762 0.89160 0.94858 1.20631 1.00225 0.92152 0.97461 1.20619 1.05439 0.96595 0.98276 1.18279 0.94109 0.84710 0.94926 1.44947 1.63489 1.07886 1.20175 1.19064 0.91333 0.92104 0.85811 1.21360 1.38939 0.94820 1.03726 0.93831 1.25785 0.94757 0.95145 1.02477 1.70026 1.41983 1.08935 1.36787 0.85709 0.79907 0.79032 0.78342 1.18692 1.20246 1.17218 1.20627 1.07940 0.94851 0.98752 1.21146 1.00570 0.94203 0.97602 1.22221 0.85888 0.96661 1.01402 1.22246 1.01296 0.93287 0.90043 0.92221 0.85110 0.92356 0.88129 0.83833 0.92461 0.87258 0.88673 0.94033 0.84256 0.85189 0.77024 0.97029 0.96988 0.91960 0.87280 0.84325 0.95276 0.89345 0.93053 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.37 -4.77 10.57 -51.38 -0.54 -5.31 16 3 C 0.46 7.22 7.66 71.24 0.55 7.76 16 4 O -0.53 -12.19 14.09 21.97 0.31 -11.88 16 5 C 0.07 0.67 5.56 85.56 0.48 1.14 16 6 N -0.55 -8.45 4.45 -900.26 -4.00 -12.46 16 7 C 0.07 0.83 5.61 86.31 0.48 1.32 16 8 C 0.05 0.89 4.30 86.31 0.37 1.26 16 9 N -0.48 -10.75 4.76 -694.57 -3.31 -14.05 16 10 C 0.03 0.90 5.65 38.13 0.22 1.12 16 11 C -0.08 -2.31 9.19 22.39 0.21 -2.10 16 12 C -0.19 -5.85 9.89 22.38 0.22 -5.63 16 13 C 0.18 6.89 6.66 38.13 0.25 7.15 16 14 N -0.74 -31.37 5.74 -342.92 -1.97 -33.34 16 15 C 0.24 11.67 3.74 85.63 0.32 11.99 16 16 C -0.55 -31.49 9.83 25.60 0.25 -31.24 16 17 H 0.04 2.71 7.84 -2.91 -0.02 2.69 16 18 C 0.02 1.01 5.47 84.65 0.46 1.48 16 19 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 20 Si 0.95 43.26 27.47 68.60 1.88 45.15 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 24 C -0.20 -7.02 9.31 22.38 0.21 -6.81 16 25 C -0.11 -3.35 8.81 22.38 0.20 -3.15 16 26 C 0.06 1.37 5.38 86.31 0.46 1.83 16 27 C 0.06 1.05 5.26 86.31 0.45 1.50 16 28 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.60 8.13 -2.39 -0.02 0.59 16 31 H 0.10 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.14 0.72 8.02 -2.39 -0.02 0.70 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.11 0.87 8.07 -2.38 -0.02 0.85 16 35 H 0.10 1.60 7.17 -2.39 -0.02 1.59 16 36 H 0.04 0.86 7.58 -2.39 -0.02 0.85 16 37 H 0.14 3.13 7.18 -2.92 -0.02 3.11 16 38 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 39 H 0.40 16.36 8.34 -92.71 -0.77 15.59 16 40 H 0.01 0.58 7.02 -2.38 -0.02 0.57 16 41 H 0.01 0.59 7.37 -2.39 -0.02 0.57 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.11 4.03 6.73 -2.91 -0.02 4.01 16 44 H 0.14 3.39 5.81 -2.91 -0.02 3.38 16 45 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.09 1.75 6.82 -2.39 -0.02 1.74 16 47 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 48 H 0.08 1.68 5.85 -2.39 -0.01 1.67 16 Total: -1.00 -71.69 381.76 -0.86 -72.54 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.14 Total: 27.49 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 6.33 Total: -10.91 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -8.98 Total: -117.08 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.23 Total: -17.19 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Total: -71.69 -0.86 -72.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819437876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.948 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds