Wall clock time and date at job start Tue Mar 31 2020 17:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00362 * 2 1 4 4 H 1.09006 * 109.51880 * 324.92030 * 3 2 1 5 5 C 1.53036 * 109.50041 * 204.84257 * 3 2 1 6 6 C 1.53042 * 109.53618 * 178.68449 * 5 3 2 7 7 C 1.52761 * 109.38144 * 61.24001 * 6 5 3 8 8 N 1.46930 * 109.00932 * 305.58308 * 7 6 5 9 9 C 1.34774 * 120.63071 * 233.59078 * 8 7 6 10 10 O 1.21588 * 119.99602 * 174.37134 * 9 8 7 11 11 N 1.34774 * 120.00316 * 354.36887 * 9 8 7 12 12 C 1.46501 * 120.00231 * 184.97194 * 11 9 8 13 13 C 1.50695 * 109.47137 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93336 * 269.72614 * 13 12 11 15 15 C 1.38103 * 120.06599 * 179.72479 * 14 13 12 16 16 C 1.38873 * 119.93144 * 0.55003 * 15 14 13 17 17 O 1.35750 * 120.06701 * 179.74319 * 16 15 14 18 18 C 1.34833 * 117.00000 * 174.64106 * 17 16 15 19 19 H 1.08005 * 119.99971 * 5.03872 * 18 17 16 20 20 C 1.38651 * 120.00400 * 185.03927 * 18 17 16 21 21 N 1.31565 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00541 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47063 * 89.99769 * 22 20 18 24 24 H 1.48495 * 109.47678 * 209.99956 * 22 20 18 25 25 H 1.48508 * 109.46925 * 330.00242 * 22 20 18 26 26 C 1.38881 * 119.86620 * 359.72814 * 16 15 14 27 27 C 1.38105 * 119.92599 * 359.97438 * 26 16 15 28 28 C 1.46924 * 118.73594 * 53.31133 * 8 7 6 29 29 H 1.09003 * 109.46827 * 299.99928 * 1 2 3 30 30 H 1.09004 * 109.46906 * 59.99890 * 1 2 3 31 31 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.00891 * 111.00540 * 123.95918 * 2 1 3 33 33 H 1.09001 * 109.45603 * 298.70192 * 5 3 2 34 34 H 1.08991 * 109.46236 * 58.66333 * 5 3 2 35 35 H 1.09002 * 109.49720 * 181.31038 * 6 5 3 36 36 H 1.09000 * 109.49912 * 301.40976 * 6 5 3 37 37 H 1.09001 * 109.50674 * 185.70732 * 7 6 5 38 38 H 1.08996 * 109.43839 * 65.42346 * 7 6 5 39 39 H 0.96998 * 120.00070 * 4.97172 * 11 9 8 40 40 H 1.09006 * 109.46943 * 60.00062 * 12 11 9 41 41 H 1.09001 * 109.46991 * 300.00273 * 12 11 9 42 42 H 1.07999 * 119.96552 * 0.02562 * 14 13 12 43 43 H 1.08000 * 120.03073 * 180.26995 * 15 14 13 44 44 H 0.96996 * 119.99857 * 179.97438 * 21 20 18 45 45 H 1.07990 * 120.03820 * 180.02562 * 26 16 15 46 46 H 1.08003 * 119.96381 * 180.02562 * 27 26 16 47 47 H 1.09003 * 109.58644 * 66.43274 * 28 8 7 48 48 H 1.08992 * 109.58903 * 186.85282 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3412 2.0128 -0.5905 5 6 3.4008 1.3791 -0.6061 6 6 3.9371 2.8122 -0.6366 7 6 4.0224 3.3520 0.7899 8 7 2.7090 3.2125 1.4337 9 6 2.1075 4.2753 2.0040 10 8 0.9782 4.1716 2.4426 11 7 2.7576 5.4528 2.0881 12 6 2.1482 6.5766 2.8036 13 6 3.0722 7.7659 2.7512 14 6 4.0155 7.9513 3.7455 15 6 4.8674 9.0371 3.6971 16 6 4.7686 9.9496 2.6549 17 8 5.6012 11.0207 2.6075 18 6 5.5275 11.8054 1.5135 19 1 4.7734 11.6168 0.7635 20 6 6.4195 12.8543 1.3511 21 7 7.3378 13.0843 2.2649 22 14 6.3178 13.9410 -0.1648 23 1 5.4084 15.0834 0.1052 24 1 7.6710 14.4536 -0.4982 25 1 5.7931 13.1497 -1.3067 26 6 3.8166 9.7638 1.6610 27 6 2.9716 8.6726 1.7116 28 6 2.0612 1.8938 1.4386 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8306 -0.5261 0.7812 33 1 4.0605 0.7573 -0.0010 34 1 3.3605 0.9848 -1.6213 35 1 4.9285 2.8200 -1.0896 36 1 3.2645 3.4400 -1.2210 37 1 4.3070 4.4039 0.7646 38 1 4.7656 2.7836 1.3490 39 1 3.6291 5.5563 1.6749 40 1 1.9768 6.2956 3.8428 41 1 1.1981 6.8332 2.3351 42 1 4.0891 7.2436 4.5579 43 1 5.6067 9.1790 4.4716 44 1 7.9621 13.8178 2.1511 45 1 3.7376 10.4713 0.8490 46 1 2.2312 8.5273 0.9388 47 1 2.6413 1.2040 2.0517 48 1 1.0524 1.9838 1.8412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841784155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:12 Heat of formation + Delta-G solvation = -25.366101 kcal Electronic energy + Delta-G solvation = -27992.980641 eV Core-core repulsion = 24048.571523 eV Total energy + Delta-G solvation = -3944.409118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61593 -39.19845 -38.31622 -36.86479 -35.59541 -34.42168 -32.66139 -32.36386 -30.47382 -30.27647 -29.49159 -26.28142 -25.44781 -25.35480 -24.23660 -22.70304 -22.07291 -21.21012 -20.66018 -19.77608 -18.40023 -18.08333 -17.06896 -16.61041 -16.22395 -15.47876 -15.19023 -14.89360 -14.78972 -14.65995 -14.56548 -14.38797 -14.05912 -13.84249 -13.71830 -13.61120 -13.39975 -13.18706 -12.84345 -12.80671 -12.68043 -12.25357 -12.10607 -11.71832 -11.69951 -11.41882 -11.27725 -11.23733 -10.97559 -10.92200 -10.80643 -10.69782 -10.50868 -10.15606 -9.44762 -9.25724 -8.97532 -8.93206 -8.48526 -8.30557 -7.35358 -6.54920 -4.13856 1.99302 2.10948 2.64961 3.07094 3.07974 3.12801 3.15414 3.73235 3.88552 3.94073 4.44580 4.47663 4.50953 4.63134 4.66053 4.90098 4.99849 5.01498 5.09971 5.14155 5.16231 5.22573 5.28513 5.41264 5.42196 5.44272 5.50570 5.56182 5.63249 5.65261 5.80232 5.83407 5.90038 5.92534 6.10075 6.19484 6.33412 6.54705 6.58330 6.60893 6.77870 6.81050 6.92615 6.95940 7.13278 7.25862 7.33186 7.69270 7.89735 7.92592 8.56178 8.90400 9.58400 10.62523 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002066 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.337163 B =13546.762253 C =14176.016132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.685 5.685 3 C 0.071 3.929 4 H 0.082 0.918 5 C -0.106 4.106 6 C -0.136 4.136 7 C 0.110 3.890 8 N -0.629 5.629 9 C 0.705 3.295 10 O -0.597 6.597 11 N -0.737 5.737 12 C 0.197 3.803 13 C -0.215 4.215 14 C -0.054 4.054 15 C -0.196 4.196 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.050 4.050 28 C 0.104 3.896 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.341 0.659 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.062 0.938 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -22.274 -4.823 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.314 5.314 3 C -0.040 4.040 4 H 0.100 0.900 5 C -0.144 4.144 6 C -0.175 4.175 7 C -0.014 4.014 8 N -0.367 5.367 9 C 0.407 3.593 10 O -0.476 6.476 11 N -0.394 5.394 12 C 0.074 3.926 13 C -0.216 4.216 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.256 4.256 27 C -0.069 4.069 28 C -0.021 4.021 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.146 0.854 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.567 -22.130 -4.957 23.907 hybrid contribution 0.218 0.961 -0.070 0.988 sum -7.349 -21.169 -5.027 22.965 Atomic orbital electron populations 1.22261 0.87484 1.01933 1.00888 1.60593 1.08132 1.13021 1.49663 1.22040 0.97235 0.89371 0.95381 0.89992 1.21478 0.94950 0.96094 1.01849 1.21865 1.02291 0.96842 0.96457 1.21587 0.84555 1.01789 0.93454 1.47173 1.20701 1.08325 1.60535 1.15926 0.84142 0.80377 0.78892 1.90888 1.17610 1.83847 1.55226 1.45693 1.23200 1.10942 1.59559 1.19843 0.94422 0.82384 0.95966 1.19218 1.03376 0.99288 0.99728 1.20535 0.93656 0.96071 0.96987 1.20215 1.04170 0.96421 1.00682 1.19438 0.89559 0.87308 0.93105 1.83979 1.51752 1.31126 1.40706 1.21354 1.17465 1.09744 0.98376 0.88918 1.25323 0.94847 0.97315 0.99002 1.70038 1.16571 1.29336 1.33374 0.85693 0.78146 0.79642 0.79860 1.19788 1.20178 1.19136 1.21161 1.00414 1.01438 1.02628 1.20651 0.96899 0.93222 0.96105 1.22183 0.99468 0.83127 0.97371 0.95458 0.91617 0.91326 0.84087 0.91716 0.90884 0.90095 0.91317 0.90048 0.91219 0.76639 0.91815 0.91727 0.86973 0.86372 0.91870 0.85413 0.87402 0.91955 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.50 60.06 0.63 0.79 16 2 N -0.68 -4.86 6.61 -113.87 -0.75 -5.61 16 3 C 0.07 0.56 2.62 -67.59 -0.18 0.39 16 4 H 0.08 0.79 7.80 -51.93 -0.41 0.38 16 5 C -0.11 -0.73 5.49 -26.69 -0.15 -0.87 16 6 C -0.14 -0.94 6.06 -26.83 -0.16 -1.10 16 7 C 0.11 0.88 6.36 -3.93 -0.02 0.86 16 8 N -0.63 -6.73 2.98 -178.77 -0.53 -7.26 16 9 C 0.71 9.92 8.29 -86.92 -0.72 9.20 16 10 O -0.60 -10.55 15.77 5.29 0.08 -10.46 16 11 N -0.74 -9.64 5.46 -66.41 -0.36 -10.00 16 12 C 0.20 2.82 5.80 -5.20 -0.03 2.79 16 13 C -0.21 -3.43 5.25 -104.58 -0.55 -3.98 16 14 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 15 C -0.20 -3.89 9.99 -39.40 -0.39 -4.29 16 16 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 17 O -0.17 -4.76 9.76 0.04 0.00 -4.76 16 18 C -0.39 -10.60 9.49 30.88 0.29 -10.31 16 19 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -24.48 13.67 55.48 0.76 -23.72 16 22 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 28 C 0.10 0.97 5.70 -3.71 -0.02 0.95 16 29 H 0.03 0.20 7.56 -51.93 -0.39 -0.19 16 30 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.34 2.00 8.50 -39.30 -0.33 1.66 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.65 5.66 -51.93 -0.29 0.36 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.40 4.63 5.96 -40.82 -0.24 4.39 16 40 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 48 H 0.09 1.04 6.47 -51.93 -0.34 0.70 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -31.54 387.74 -9.96 -41.50 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.19 Total: 8.52 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.79 Total: -8.91 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.89 Total: -46.59 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.54 -9.96 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841784155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.134 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds