Wall clock time and date at job start Tue Mar 31 2020 17:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00362 * 2 1 4 4 H 1.09006 * 109.51880 * 324.92030 * 3 2 1 5 5 C 1.53036 * 109.50041 * 204.84257 * 3 2 1 6 6 C 1.53042 * 109.53618 * 178.68449 * 5 3 2 7 7 C 1.52761 * 109.38144 * 61.24001 * 6 5 3 8 8 N 1.46930 * 109.00932 * 305.58308 * 7 6 5 9 9 C 1.34774 * 120.63071 * 233.59078 * 8 7 6 10 10 O 1.21588 * 119.99602 * 174.37134 * 9 8 7 11 11 N 1.34774 * 120.00316 * 354.36887 * 9 8 7 12 12 C 1.46501 * 120.00231 * 184.97194 * 11 9 8 13 13 C 1.50695 * 109.47137 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93336 * 269.72614 * 13 12 11 15 15 C 1.38103 * 120.06599 * 179.72479 * 14 13 12 16 16 C 1.38873 * 119.93144 * 0.55003 * 15 14 13 17 17 O 1.35750 * 120.06701 * 179.74319 * 16 15 14 18 18 C 1.34833 * 117.00000 * 174.64106 * 17 16 15 19 19 H 1.08005 * 119.99971 * 5.03872 * 18 17 16 20 20 C 1.38651 * 120.00400 * 185.03927 * 18 17 16 21 21 N 1.31565 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00541 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47063 * 89.99769 * 22 20 18 24 24 H 1.48495 * 109.47678 * 209.99956 * 22 20 18 25 25 H 1.48508 * 109.46925 * 330.00242 * 22 20 18 26 26 C 1.38881 * 119.86620 * 359.72814 * 16 15 14 27 27 C 1.38105 * 119.92599 * 359.97438 * 26 16 15 28 28 C 1.46924 * 118.73594 * 53.31133 * 8 7 6 29 29 H 1.09003 * 109.46827 * 299.99928 * 1 2 3 30 30 H 1.09004 * 109.46906 * 59.99890 * 1 2 3 31 31 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.00891 * 111.00540 * 123.95918 * 2 1 3 33 33 H 1.09001 * 109.45603 * 298.70192 * 5 3 2 34 34 H 1.08991 * 109.46236 * 58.66333 * 5 3 2 35 35 H 1.09002 * 109.49720 * 181.31038 * 6 5 3 36 36 H 1.09000 * 109.49912 * 301.40976 * 6 5 3 37 37 H 1.09001 * 109.50674 * 185.70732 * 7 6 5 38 38 H 1.08996 * 109.43839 * 65.42346 * 7 6 5 39 39 H 0.96998 * 120.00070 * 4.97172 * 11 9 8 40 40 H 1.09006 * 109.46943 * 60.00062 * 12 11 9 41 41 H 1.09001 * 109.46991 * 300.00273 * 12 11 9 42 42 H 1.07999 * 119.96552 * 0.02562 * 14 13 12 43 43 H 1.08000 * 120.03073 * 180.26995 * 15 14 13 44 44 H 0.96996 * 119.99857 * 179.97438 * 21 20 18 45 45 H 1.07990 * 120.03820 * 180.02562 * 26 16 15 46 46 H 1.08003 * 119.96381 * 180.02562 * 27 26 16 47 47 H 1.09003 * 109.58644 * 66.43274 * 28 8 7 48 48 H 1.08992 * 109.58903 * 186.85282 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3412 2.0128 -0.5905 5 6 3.4008 1.3791 -0.6061 6 6 3.9371 2.8122 -0.6366 7 6 4.0224 3.3520 0.7899 8 7 2.7090 3.2125 1.4337 9 6 2.1075 4.2753 2.0040 10 8 0.9782 4.1716 2.4426 11 7 2.7576 5.4528 2.0881 12 6 2.1482 6.5766 2.8036 13 6 3.0722 7.7659 2.7512 14 6 4.0155 7.9513 3.7455 15 6 4.8674 9.0371 3.6971 16 6 4.7686 9.9496 2.6549 17 8 5.6012 11.0207 2.6075 18 6 5.5275 11.8054 1.5135 19 1 4.7734 11.6168 0.7635 20 6 6.4195 12.8543 1.3511 21 7 7.3378 13.0843 2.2649 22 14 6.3178 13.9410 -0.1648 23 1 5.4084 15.0834 0.1052 24 1 7.6710 14.4536 -0.4982 25 1 5.7931 13.1497 -1.3067 26 6 3.8166 9.7638 1.6610 27 6 2.9716 8.6726 1.7116 28 6 2.0612 1.8938 1.4386 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8306 -0.5261 0.7812 33 1 4.0605 0.7573 -0.0010 34 1 3.3605 0.9848 -1.6213 35 1 4.9285 2.8200 -1.0896 36 1 3.2645 3.4400 -1.2210 37 1 4.3070 4.4039 0.7646 38 1 4.7656 2.7836 1.3490 39 1 3.6291 5.5563 1.6749 40 1 1.9768 6.2956 3.8428 41 1 1.1981 6.8332 2.3351 42 1 4.0891 7.2436 4.5579 43 1 5.6067 9.1790 4.4716 44 1 7.9621 13.8178 2.1511 45 1 3.7376 10.4713 0.8490 46 1 2.2312 8.5273 0.9388 47 1 2.6413 1.2040 2.0517 48 1 1.0524 1.9838 1.8412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841784155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:11 Heat of formation + Delta-G solvation = -46.934965 kcal Electronic energy + Delta-G solvation = -27993.915937 eV Core-core repulsion = 24048.571523 eV Total energy + Delta-G solvation = -3945.344414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58515 -40.79992 -39.24912 -38.42791 -36.35527 -35.65149 -34.27690 -33.38428 -31.85622 -31.53943 -30.49006 -27.76304 -26.83395 -25.98411 -25.40037 -23.65148 -23.34876 -22.27194 -21.88827 -20.70965 -19.87988 -19.33817 -18.78790 -17.54762 -17.09466 -16.60021 -16.41815 -16.15533 -16.03195 -15.77851 -15.56166 -15.45088 -15.35731 -15.16122 -14.81634 -14.64455 -14.49929 -14.36382 -14.05049 -13.80616 -13.67286 -13.50730 -13.26998 -13.03232 -12.83513 -12.56005 -12.38153 -12.33906 -12.23752 -12.11878 -11.91982 -11.87085 -11.53598 -11.28119 -11.20601 -10.81040 -10.26776 -9.83608 -9.79640 -9.23751 -9.02642 -8.48374 -6.16547 0.51336 0.57020 1.36087 1.43643 1.52934 1.67147 2.07617 2.16997 2.73135 2.97680 3.18656 3.26537 3.47803 3.79386 3.80159 3.87945 3.99865 4.02196 4.05324 4.16785 4.25679 4.41731 4.44988 4.52377 4.54488 4.56167 4.68333 4.70609 4.77039 4.78841 4.80316 4.91821 5.02706 5.03239 5.08002 5.14164 5.25706 5.26856 5.33870 5.42501 5.46986 5.52128 5.68420 5.74753 5.88482 5.97798 6.01241 6.14987 6.41507 6.91637 6.96465 7.49810 7.75345 8.74259 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002066 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.337163 B =13546.762253 C =14176.016132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.684 5.684 3 C 0.079 3.921 4 H 0.062 0.938 5 C -0.100 4.100 6 C -0.131 4.131 7 C 0.105 3.895 8 N -0.624 5.624 9 C 0.701 3.299 10 O -0.637 6.637 11 N -0.731 5.731 12 C 0.203 3.797 13 C -0.182 4.182 14 C -0.042 4.042 15 C -0.203 4.203 16 C 0.124 3.876 17 O -0.228 6.228 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.243 4.243 27 C -0.045 4.045 28 C 0.105 3.895 29 H 0.018 0.982 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.350 0.650 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.405 0.595 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.137 0.863 47 H 0.080 0.920 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 -24.834 -5.993 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.314 5.314 3 C -0.032 4.032 4 H 0.080 0.920 5 C -0.138 4.138 6 C -0.170 4.170 7 C -0.017 4.017 8 N -0.361 5.361 9 C 0.402 3.598 10 O -0.519 6.519 11 N -0.388 5.388 12 C 0.080 3.920 13 C -0.183 4.183 14 C -0.060 4.060 15 C -0.223 4.223 16 C 0.073 3.927 17 O -0.134 6.134 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.175 1.175 26 C -0.262 4.262 27 C -0.064 4.064 28 C -0.020 4.020 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.244 0.756 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.165 0.835 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.155 0.845 47 H 0.099 0.901 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.327 -24.767 -6.144 26.842 hybrid contribution 0.243 1.375 0.385 1.448 sum -8.084 -23.393 -5.759 25.411 Atomic orbital electron populations 1.22265 0.87395 1.02689 1.00145 1.60631 1.08272 1.12419 1.50094 1.21929 0.97734 0.89438 0.94133 0.92006 1.21446 0.94134 0.96279 1.01966 1.21843 1.03085 0.96476 0.95556 1.21820 0.83384 1.02392 0.94145 1.47255 1.21425 1.07847 1.59600 1.16053 0.83741 0.81017 0.78939 1.90866 1.19436 1.84546 1.57041 1.45442 1.23448 1.10454 1.59484 1.19724 0.93793 0.81860 0.96671 1.19465 1.01868 0.98866 0.98140 1.20868 0.92237 0.95131 0.97799 1.20445 1.04964 0.96868 0.99984 1.19983 0.90186 0.87535 0.95013 1.83950 1.54364 1.33332 1.41772 1.21822 1.18014 1.10220 0.98836 0.87910 1.26575 0.94265 0.98700 1.02421 1.70180 1.18384 1.30869 1.36133 0.84600 0.78381 0.77524 0.75828 1.18980 1.19657 1.17549 1.21235 1.00600 1.02442 1.01943 1.20924 0.96439 0.91945 0.97044 1.22265 0.98420 0.82830 0.98502 0.96346 0.92254 0.89819 0.83066 0.90497 0.90811 0.88164 0.92529 0.89908 0.89378 0.75612 0.91181 0.91656 0.83520 0.86560 0.91805 0.86153 0.84547 0.90140 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.50 127.69 1.34 1.65 16 2 N -0.68 -8.48 6.61 -514.19 -3.40 -11.87 16 3 C 0.08 1.13 2.62 44.99 0.12 1.25 16 4 H 0.06 1.14 7.80 -2.38 -0.02 1.13 16 5 C -0.10 -1.10 5.49 30.62 0.17 -0.94 16 6 C -0.13 -1.44 6.06 30.53 0.19 -1.25 16 7 C 0.10 1.36 6.36 86.22 0.55 1.91 16 8 N -0.62 -11.98 2.98 -837.76 -2.50 -14.47 16 9 C 0.70 18.31 8.29 179.06 1.49 19.79 16 10 O -0.64 -21.75 15.77 -3.99 -0.06 -21.81 16 11 N -0.73 -16.97 5.46 -482.30 -2.63 -19.60 16 12 C 0.20 5.15 5.80 85.63 0.50 5.65 16 13 C -0.18 -5.26 5.25 -19.84 -0.10 -5.36 16 14 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 15 C -0.20 -8.05 9.99 22.39 0.22 -7.82 16 16 C 0.12 5.83 6.65 22.58 0.15 5.98 16 17 O -0.23 -13.22 9.76 -22.76 -0.22 -13.45 16 18 C -0.41 -23.22 9.49 67.92 0.64 -22.58 16 19 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 20 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 21 N -0.92 -55.00 13.67 21.61 0.30 -54.70 16 22 Si 1.02 41.62 29.55 68.60 2.03 43.65 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 C -0.24 -9.91 9.17 22.39 0.21 -9.71 16 27 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 28 C 0.10 1.78 5.70 86.36 0.49 2.28 16 29 H 0.02 0.26 7.56 -2.39 -0.02 0.24 16 30 H 0.06 0.81 8.06 -2.38 -0.02 0.79 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.35 3.30 8.50 -89.70 -0.76 2.54 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.06 5.66 -2.39 -0.01 1.05 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.41 8.12 5.96 -92.71 -0.55 7.57 16 40 H 0.07 1.77 8.08 -2.38 -0.02 1.75 16 41 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 42 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.12 5.03 5.64 -2.92 -0.02 5.01 16 46 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 47 H 0.08 1.09 8.04 -2.39 -0.02 1.07 16 48 H 0.07 1.49 6.47 -2.39 -0.02 1.47 16 Total: -1.00 -72.85 387.74 0.04 -72.81 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.33 Total: 31.63 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 6.85 Total: -12.19 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -8.23 Total: -100.65 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.29 Total: -35.26 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -72.85 0.04 -72.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841784155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.877 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds