Wall clock time and date at job start Tue Mar 31 2020 17:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35988 * 116.99678 * 2 1 4 4 C 1.38570 * 120.07663 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99793 * 179.70232 * 4 3 2 6 6 C 1.38252 * 120.14666 * 0.54725 * 5 4 3 7 7 C 1.50699 * 119.92532 * 179.72218 * 6 5 4 8 8 N 1.46497 * 109.47293 * 269.72899 * 7 6 5 9 9 C 1.37484 * 119.99926 * 180.02562 * 8 7 6 10 10 N 1.30336 * 119.99983 * 359.97438 * 9 8 7 11 11 N 1.37489 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00056 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47106 * 184.79628 * 12 11 9 14 14 C 1.50702 * 115.55326 * 294.81957 * 13 12 11 15 15 H 1.07999 * 119.99956 * 95.20018 * 14 13 12 16 16 C 1.37875 * 119.99721 * 274.92861 * 14 13 12 17 17 N 1.31513 * 120.00504 * 355.41701 * 16 14 13 18 18 Si 1.86807 * 119.99791 * 175.41687 * 16 14 13 19 19 H 1.48495 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47026 * 120.00250 * 18 16 14 21 21 H 1.48505 * 109.46986 * 239.99985 * 18 16 14 22 22 C 1.53005 * 117.49796 * 80.48831 * 13 12 11 23 23 C 1.52998 * 117.49893 * 149.14866 * 13 12 11 24 24 C 1.38241 * 120.14592 * 359.45204 * 6 5 4 25 25 C 1.38569 * 119.99950 * 0.27102 * 24 6 5 26 26 O 1.35997 * 120.06832 * 179.97438 * 25 24 6 27 27 C 1.42893 * 117.00167 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47071 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.47195 * 60.00103 * 1 2 3 30 30 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99740 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92514 * 180.29592 * 5 4 3 33 33 H 1.08996 * 109.47074 * 149.72778 * 7 6 5 34 34 H 1.09003 * 109.46911 * 29.73209 * 7 6 5 35 35 H 0.96996 * 119.99936 * 0.02562 * 8 7 6 36 36 H 0.96997 * 120.00684 * 0.02562 * 10 9 8 37 37 H 0.97004 * 119.99533 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.46859 * 64.80461 * 12 11 9 39 39 H 1.08993 * 109.47435 * 304.80000 * 12 11 9 40 40 H 0.96995 * 120.00518 * 184.99940 * 17 16 14 41 41 H 1.08997 * 117.49739 * 215.00459 * 22 13 12 42 42 H 1.08994 * 117.49368 * 0.02562 * 22 13 12 43 43 H 1.08998 * 117.49961 * 359.97438 * 23 13 12 44 44 H 1.08996 * 117.49982 * 144.97833 * 23 13 12 45 45 H 1.07999 * 119.99860 * 180.24980 * 24 6 5 46 46 H 1.09000 * 109.47184 * 299.99413 * 27 26 25 47 47 H 1.08996 * 109.47285 * 59.99817 * 27 26 25 48 48 H 1.09007 * 109.46754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0068 6 6 3.3029 3.6799 0.0010 7 6 3.9836 5.0244 0.0015 8 7 4.2041 5.4606 -1.3795 9 6 4.8151 6.6664 -1.6302 10 7 5.1978 7.4216 -0.6392 11 7 5.0216 7.0761 -2.9263 12 6 5.6722 8.3612 -3.1935 13 6 5.6718 8.6297 -4.6997 14 6 6.4913 7.6758 -5.5302 15 1 6.0196 6.8233 -5.9963 16 6 7.8419 7.8946 -5.6996 17 7 8.3981 8.9823 -5.2128 18 14 8.8821 6.6458 -6.6207 19 1 8.0241 5.5179 -7.0641 20 1 9.5001 7.2939 -7.8054 21 1 9.9491 6.1329 -5.7242 22 6 4.3853 9.1796 -5.3190 23 6 5.6066 10.0881 -5.1574 24 6 4.0603 2.5234 0.0005 25 6 3.4359 1.2863 0.0000 26 8 4.1796 0.1477 -0.0010 27 6 5.6003 0.3008 -0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2146 2.3196 0.0014 32 1 1.3342 4.5115 0.0120 33 1 4.9417 4.9463 0.5153 34 1 3.3537 5.7503 0.5157 35 1 3.9190 4.8987 -2.1170 36 1 5.0518 7.1329 0.2752 37 1 4.7365 6.5142 -3.6638 38 1 6.6995 8.3309 -2.8302 39 1 5.1294 9.1564 -2.6826 40 1 9.3319 9.1723 -5.3936 41 1 4.1316 8.8514 -6.3269 42 1 3.5394 9.3505 -4.6531 43 1 5.5636 10.8564 -4.3854 44 1 6.1567 10.3578 -6.0589 45 1 5.1386 2.5840 0.0001 46 1 5.9064 0.8512 -0.8906 47 1 5.9066 0.8498 0.8893 48 1 6.0716 -0.6822 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849026064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:16 Heat of formation + Delta-G solvation = 12.748549 kcal Electronic energy + Delta-G solvation = -27889.854738 eV Core-core repulsion = 23947.098395 eV Total energy + Delta-G solvation = -3942.756342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.90715 -38.76363 -38.44437 -37.35203 -36.36287 -33.63200 -31.91294 -31.19664 -30.66449 -30.00392 -28.00211 -27.54391 -26.33367 -25.44016 -24.35556 -22.50690 -21.65571 -21.05451 -19.64023 -19.25885 -18.80044 -17.71942 -17.17400 -17.02563 -16.38117 -16.14557 -15.61473 -15.53377 -15.06661 -14.85144 -14.68606 -14.45921 -14.35774 -13.95182 -13.63163 -13.49262 -13.17190 -12.88456 -12.64473 -12.51659 -12.31758 -12.21110 -11.52520 -11.50288 -11.49153 -11.38848 -11.25225 -11.05796 -10.95522 -10.75756 -10.45845 -10.14825 -9.39973 -9.08522 -8.93320 -8.73741 -8.41246 -8.20233 -8.09420 -8.04422 -7.26030 -6.01074 -4.09938 0.90687 1.06579 2.92222 2.98026 3.15585 3.27609 3.36573 3.38478 3.62930 3.73747 4.36679 4.39515 4.43576 4.62266 4.69651 4.76029 4.80643 4.85153 4.93320 4.96847 5.04888 5.14089 5.23599 5.26762 5.27331 5.39152 5.44531 5.50286 5.77783 5.91251 6.14404 6.26689 6.32616 6.36202 6.46046 6.62820 6.71848 6.76017 6.81573 6.90207 7.03732 7.21045 7.25088 7.53234 7.57860 7.69594 7.87534 8.17787 8.42865 8.65359 8.90971 9.51344 9.56365 11.06138 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.002455 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.284558 B =11404.363686 C =12328.476440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.103 3.897 4 C -0.175 4.175 5 C -0.095 4.095 6 C -0.096 4.096 7 C 0.180 3.820 8 N -0.777 5.777 9 C 0.634 3.366 10 N -0.838 5.838 11 N -0.705 5.705 12 C 0.197 3.803 13 C 0.023 3.977 14 C -0.496 4.496 15 H 0.058 0.942 16 C 0.073 3.927 17 N -0.874 5.874 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.212 4.212 23 C -0.142 4.142 24 C -0.152 4.152 25 C 0.097 3.903 26 O -0.307 6.307 27 C 0.025 3.975 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.324 0.676 37 H 0.400 0.600 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.138 0.862 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 -16.492 12.189 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.057 3.943 4 C -0.193 4.193 5 C -0.114 4.114 6 C -0.097 4.097 7 C 0.055 3.945 8 N -0.424 5.424 9 C 0.268 3.732 10 N -0.489 5.489 11 N -0.345 5.345 12 C 0.074 3.926 13 C 0.022 3.978 14 C -0.534 4.534 15 H 0.076 0.924 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.249 4.249 23 C -0.180 4.180 24 C -0.171 4.171 25 C 0.052 3.948 26 O -0.221 6.221 27 C -0.070 4.070 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.221 0.779 36 H 0.140 0.860 37 H 0.234 0.766 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.156 0.844 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.029 -15.712 12.457 23.912 hybrid contribution 0.018 -1.620 -0.679 1.756 sum -13.011 -17.332 11.778 24.666 Atomic orbital electron populations 1.23080 0.78509 1.04022 1.01307 1.86177 1.21062 1.25921 1.88905 1.18299 0.89157 0.85275 1.01535 1.21058 1.00027 0.91348 1.06905 1.20811 0.93697 0.97279 0.99613 1.19517 0.93424 0.94129 1.02652 1.19864 0.99095 0.91355 0.84197 1.45554 1.68537 1.21626 1.06682 1.19071 0.85468 0.80381 0.88312 1.69870 1.41637 1.36023 1.01344 1.44045 1.65648 1.23568 1.01242 1.20710 0.95980 0.81137 0.94820 1.19133 0.93861 0.94031 0.90739 1.20379 0.92154 1.09636 1.31248 0.92395 1.24970 0.97751 0.95262 0.95086 1.69999 1.12758 1.24562 1.43707 0.86610 0.80561 0.81797 0.79414 1.19836 1.21113 1.21033 1.22995 0.92021 1.08948 1.00963 1.22447 0.99375 0.94011 1.02214 1.21031 1.00611 0.90436 1.05006 1.18215 0.88261 0.86140 1.02205 1.86162 1.18833 1.28089 1.89010 1.23106 0.78366 1.03994 1.01571 0.92678 0.92589 0.88198 0.84594 0.85216 0.91732 0.91526 0.77866 0.86048 0.76557 0.92051 0.94533 0.93031 0.90666 0.91777 0.91822 0.89677 0.84422 0.92382 0.92603 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.28 10.28 -34.21 -0.35 -3.63 16 3 C 0.10 1.13 6.70 -39.12 -0.26 0.86 16 4 C -0.17 -1.58 9.04 -39.46 -0.36 -1.93 16 5 C -0.10 -0.89 9.69 -39.57 -0.38 -1.27 16 6 C -0.10 -0.98 5.25 -104.62 -0.55 -1.53 16 7 C 0.18 2.01 5.14 -5.20 -0.03 1.98 16 8 N -0.78 -10.54 5.66 -62.98 -0.36 -10.89 16 9 C 0.63 11.33 8.71 -320.09 -2.79 8.54 16 10 N -0.84 -16.19 13.21 30.15 0.40 -15.79 16 11 N -0.71 -13.80 5.59 -61.80 -0.35 -14.14 16 12 C 0.20 4.53 5.50 -4.04 -0.02 4.50 16 13 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 14 C -0.50 -12.95 8.59 -34.44 -0.30 -13.24 16 15 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 16 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 17 N -0.87 -24.53 12.65 55.43 0.70 -23.83 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 23 C -0.14 -3.33 9.14 -26.69 -0.24 -3.57 16 24 C -0.15 -1.58 8.69 -39.46 -0.34 -1.92 16 25 C 0.10 1.11 6.70 -39.12 -0.26 0.85 16 26 O -0.31 -3.53 10.28 -34.23 -0.35 -3.89 16 27 C 0.02 0.19 9.81 101.05 0.99 1.19 16 28 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 34 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 35 H 0.39 4.90 8.56 -40.82 -0.35 4.55 16 36 H 0.32 5.49 7.15 -40.82 -0.29 5.20 16 37 H 0.40 7.40 8.43 -40.82 -0.34 7.05 16 38 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 45 H 0.14 1.30 6.30 -52.49 -0.33 0.97 16 46 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 47 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 48 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -31.36 400.65 -10.84 -42.20 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -7.41 Total: 15.12 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -4.14 Total: -7.00 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.40 Total: -64.65 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.70 Total: -7.51 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.36 -10.84 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849026064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.952 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds