Wall clock time and date at job start Tue Mar 31 2020 17:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35988 * 116.99678 * 2 1 4 4 C 1.38570 * 120.07663 * 0.02562 * 3 2 1 5 5 C 1.38244 * 119.99793 * 179.70232 * 4 3 2 6 6 C 1.38252 * 120.14666 * 0.54725 * 5 4 3 7 7 C 1.50699 * 119.92532 * 179.72218 * 6 5 4 8 8 N 1.46497 * 109.47293 * 269.72899 * 7 6 5 9 9 C 1.37484 * 119.99926 * 180.02562 * 8 7 6 10 10 N 1.30336 * 119.99983 * 359.97438 * 9 8 7 11 11 N 1.37489 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00056 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47106 * 184.79628 * 12 11 9 14 14 C 1.50702 * 115.55326 * 294.81957 * 13 12 11 15 15 H 1.07999 * 119.99956 * 95.20018 * 14 13 12 16 16 C 1.37875 * 119.99721 * 274.92861 * 14 13 12 17 17 N 1.31513 * 120.00504 * 355.41701 * 16 14 13 18 18 Si 1.86807 * 119.99791 * 175.41687 * 16 14 13 19 19 H 1.48495 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47026 * 120.00250 * 18 16 14 21 21 H 1.48505 * 109.46986 * 239.99985 * 18 16 14 22 22 C 1.53005 * 117.49796 * 80.48831 * 13 12 11 23 23 C 1.52998 * 117.49893 * 149.14866 * 13 12 11 24 24 C 1.38241 * 120.14592 * 359.45204 * 6 5 4 25 25 C 1.38569 * 119.99950 * 0.27102 * 24 6 5 26 26 O 1.35997 * 120.06832 * 179.97438 * 25 24 6 27 27 C 1.42893 * 117.00167 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47071 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.47195 * 60.00103 * 1 2 3 30 30 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99740 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92514 * 180.29592 * 5 4 3 33 33 H 1.08996 * 109.47074 * 149.72778 * 7 6 5 34 34 H 1.09003 * 109.46911 * 29.73209 * 7 6 5 35 35 H 0.96996 * 119.99936 * 0.02562 * 8 7 6 36 36 H 0.96997 * 120.00684 * 0.02562 * 10 9 8 37 37 H 0.97004 * 119.99533 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.46859 * 64.80461 * 12 11 9 39 39 H 1.08993 * 109.47435 * 304.80000 * 12 11 9 40 40 H 0.96995 * 120.00518 * 184.99940 * 17 16 14 41 41 H 1.08997 * 117.49739 * 215.00459 * 22 13 12 42 42 H 1.08994 * 117.49368 * 0.02562 * 22 13 12 43 43 H 1.08998 * 117.49961 * 359.97438 * 23 13 12 44 44 H 1.08996 * 117.49982 * 144.97833 * 23 13 12 45 45 H 1.07999 * 119.99860 * 180.24980 * 24 6 5 46 46 H 1.09000 * 109.47184 * 299.99413 * 27 26 25 47 47 H 1.08996 * 109.47285 * 59.99817 * 27 26 25 48 48 H 1.09007 * 109.46754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0068 6 6 3.3029 3.6799 0.0010 7 6 3.9836 5.0244 0.0015 8 7 4.2041 5.4606 -1.3795 9 6 4.8151 6.6664 -1.6302 10 7 5.1978 7.4216 -0.6392 11 7 5.0216 7.0761 -2.9263 12 6 5.6722 8.3612 -3.1935 13 6 5.6718 8.6297 -4.6997 14 6 6.4913 7.6758 -5.5302 15 1 6.0196 6.8233 -5.9963 16 6 7.8419 7.8946 -5.6996 17 7 8.3981 8.9823 -5.2128 18 14 8.8821 6.6458 -6.6207 19 1 8.0241 5.5179 -7.0641 20 1 9.5001 7.2939 -7.8054 21 1 9.9491 6.1329 -5.7242 22 6 4.3853 9.1796 -5.3190 23 6 5.6066 10.0881 -5.1574 24 6 4.0603 2.5234 0.0005 25 6 3.4359 1.2863 0.0000 26 8 4.1796 0.1477 -0.0010 27 6 5.6003 0.3008 -0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2146 2.3196 0.0014 32 1 1.3342 4.5115 0.0120 33 1 4.9417 4.9463 0.5153 34 1 3.3537 5.7503 0.5157 35 1 3.9190 4.8987 -2.1170 36 1 5.0518 7.1329 0.2752 37 1 4.7365 6.5142 -3.6638 38 1 6.6995 8.3309 -2.8302 39 1 5.1294 9.1564 -2.6826 40 1 9.3319 9.1723 -5.3936 41 1 4.1316 8.8514 -6.3269 42 1 3.5394 9.3505 -4.6531 43 1 5.5636 10.8564 -4.3854 44 1 6.1567 10.3578 -6.0589 45 1 5.1386 2.5840 0.0001 46 1 5.9064 0.8512 -0.8906 47 1 5.9066 0.8498 0.8893 48 1 6.0716 -0.6822 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849026064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:14 Heat of formation + Delta-G solvation = -4.675136 kcal Electronic energy + Delta-G solvation = -27890.610285 eV Core-core repulsion = 23947.098395 eV Total energy + Delta-G solvation = -3943.511890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63891 -39.73446 -39.44185 -38.62881 -37.73108 -34.93004 -33.91713 -32.43300 -31.38601 -31.12036 -28.80883 -28.11297 -27.90005 -27.04698 -25.67945 -23.21809 -22.88507 -22.43387 -21.18723 -20.99708 -19.54634 -18.92022 -18.18151 -17.85830 -17.67050 -17.12306 -16.96962 -16.61696 -16.17351 -15.85184 -15.75224 -15.61731 -15.51160 -15.33022 -14.91779 -14.65141 -14.37234 -14.29399 -13.76230 -13.57239 -13.37340 -13.06230 -12.96097 -12.90338 -12.86474 -12.40499 -12.26971 -12.15597 -12.10940 -12.07040 -11.96360 -11.94987 -11.27314 -10.85233 -10.38216 -10.22468 -9.95130 -9.77122 -9.43158 -8.86828 -8.80402 -8.04903 -6.18151 0.14257 0.31168 1.41360 1.45126 1.53984 2.02592 2.30268 2.31896 2.32069 2.44565 2.67937 3.22913 3.34011 3.55526 3.64375 3.75668 4.00187 4.06151 4.26321 4.31061 4.34213 4.35508 4.40908 4.41466 4.52001 4.53524 4.65255 4.69626 4.71834 4.73527 4.75046 4.86743 5.00570 5.03501 5.06789 5.19692 5.25110 5.36999 5.50552 5.59564 5.66665 5.68312 5.73482 5.84253 6.05476 6.29917 6.43038 6.55429 6.67703 6.89366 7.27339 7.50682 8.13186 9.02190 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.002455 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.284558 B =11404.363686 C =12328.476440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.093 4.093 6 C -0.102 4.102 7 C 0.183 3.817 8 N -0.763 5.763 9 C 0.634 3.366 10 N -0.869 5.869 11 N -0.707 5.707 12 C 0.220 3.780 13 C 0.002 3.998 14 C -0.500 4.500 15 H 0.059 0.941 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.947 3.053 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.289 1.289 22 C -0.179 4.179 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.075 3.925 26 O -0.329 6.329 27 C 0.019 3.981 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.335 0.665 37 H 0.406 0.594 38 H 0.018 0.982 39 H 0.033 0.967 40 H 0.258 0.742 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.142 0.858 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 -17.731 12.284 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.045 3.955 4 C -0.189 4.189 5 C -0.111 4.111 6 C -0.103 4.103 7 C 0.059 3.941 8 N -0.409 5.409 9 C 0.268 3.732 10 N -0.522 5.522 11 N -0.348 5.348 12 C 0.095 3.905 13 C 0.002 3.998 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.176 4.176 17 N -0.544 5.544 18 Si 0.774 3.226 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.215 1.215 22 C -0.216 4.216 23 C -0.192 4.192 24 C -0.173 4.173 25 C 0.030 3.970 26 O -0.243 6.243 27 C -0.075 4.075 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.151 0.849 37 H 0.241 0.759 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.160 0.840 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.944 -16.999 12.560 25.885 hybrid contribution 0.527 -1.298 -0.656 1.547 sum -14.417 -18.297 11.904 26.160 Atomic orbital electron populations 1.23372 0.76377 1.05560 1.02436 1.86144 1.23396 1.26142 1.88901 1.18596 0.89348 0.86045 1.01561 1.21325 1.01258 0.90511 1.05760 1.21032 0.93398 0.98083 0.98610 1.19423 0.93877 0.93276 1.03675 1.19945 0.99394 0.92104 0.82666 1.45445 1.67293 1.20084 1.08081 1.18953 0.85398 0.81528 0.87350 1.69819 1.42590 1.37484 1.02307 1.43815 1.65839 1.22789 1.02317 1.20168 0.93706 0.82655 0.93949 1.19169 0.95729 0.93876 0.91066 1.20672 0.92497 1.09818 1.30826 0.92252 1.25669 0.99035 0.96721 0.96212 1.70119 1.12835 1.26247 1.45230 0.85676 0.78914 0.79936 0.78077 1.18763 1.21005 1.21538 1.22961 0.91404 1.05896 1.01335 1.22367 1.00992 0.94249 1.01580 1.21089 1.00925 0.90358 1.04913 1.18490 0.88907 0.86391 1.03197 1.86127 1.20318 1.28634 1.89232 1.23297 0.77017 1.05274 1.01927 0.91310 0.91563 0.86649 0.82045 0.83580 0.91860 0.90661 0.77022 0.84857 0.75883 0.96394 0.94916 0.93318 0.90054 0.89542 0.91263 0.91877 0.84050 0.92434 0.91781 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.73 10.28 -79.55 -0.82 -7.55 16 3 C 0.09 1.87 6.70 22.57 0.15 2.02 16 4 C -0.17 -2.68 9.04 22.35 0.20 -2.48 16 5 C -0.09 -1.50 9.69 22.27 0.22 -1.28 16 6 C -0.10 -1.90 5.25 -19.86 -0.10 -2.00 16 7 C 0.18 3.77 5.14 85.63 0.44 4.21 16 8 N -0.76 -19.41 5.66 -353.15 -2.00 -21.41 16 9 C 0.63 22.00 8.71 260.54 2.27 24.27 16 10 N -0.87 -33.04 13.21 -58.53 -0.77 -33.81 16 11 N -0.71 -27.08 5.59 -349.42 -1.95 -29.04 16 12 C 0.22 10.14 5.50 86.38 0.47 10.62 16 13 C 0.00 0.11 1.47 -52.93 -0.08 0.04 16 14 C -0.50 -25.91 8.59 25.60 0.22 -25.69 16 15 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 16 C 0.02 1.29 5.43 84.65 0.46 1.75 16 17 N -0.91 -51.78 12.65 21.45 0.27 -51.51 16 18 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 C -0.18 -7.31 9.96 30.62 0.30 -7.00 16 23 C -0.15 -7.17 9.14 30.62 0.28 -6.89 16 24 C -0.15 -3.06 8.69 22.35 0.19 -2.87 16 25 C 0.08 1.69 6.70 22.57 0.15 1.84 16 26 O -0.33 -7.50 10.28 -79.65 -0.82 -8.32 16 27 C 0.02 0.29 9.81 113.37 1.11 1.41 16 28 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 29 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.16 1.60 6.30 -2.91 -0.02 1.58 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.06 1.35 7.91 -2.39 -0.02 1.33 16 34 H 0.08 1.46 7.91 -2.39 -0.02 1.44 16 35 H 0.40 9.20 8.56 -92.71 -0.79 8.41 16 36 H 0.34 11.05 7.15 -92.71 -0.66 10.38 16 37 H 0.41 14.48 8.43 -92.71 -0.78 13.70 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 40 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 41 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.14 2.58 6.30 -2.91 -0.02 2.57 16 46 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 47 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 48 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -67.45 400.65 2.11 -65.34 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: -1.24 Total: 42.23 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 7.41 Total: -0.79 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -4.45 Total: -135.77 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.64 Total: -15.87 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.45 2.11 -65.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849026064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.666 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds