Wall clock time and date at job start Tue Mar 31 2020 17:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00049 * 2 1 4 4 C 1.52994 * 109.47434 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47363 * 64.99362 * 4 3 2 6 6 C 1.34771 * 120.00193 * 180.02562 * 5 4 3 7 7 O 1.21519 * 119.99930 * 0.02562 * 6 5 4 8 8 C 1.48190 * 120.00313 * 180.02562 * 6 5 4 9 9 C 1.39030 * 119.69250 * 179.97438 * 8 6 5 10 10 C 1.39444 * 118.95975 * 179.97438 * 9 8 6 11 11 N 1.39196 * 120.83597 * 180.02562 * 10 9 8 12 12 C 1.46849 * 110.99489 * 304.18556 * 11 10 9 13 13 C 1.53039 * 109.52008 * 174.16148 * 12 11 10 14 14 C 1.53114 * 109.27938 * 59.17799 * 13 12 11 15 15 C 1.50701 * 109.52327 * 182.43741 * 14 13 12 16 16 H 1.08008 * 119.99903 * 119.68414 * 15 14 13 17 17 C 1.37873 * 120.00160 * 299.68834 * 15 14 13 18 18 N 1.31510 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46954 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47045 * 119.99776 * 19 17 15 22 22 H 1.48496 * 109.47035 * 239.99993 * 19 17 15 23 23 C 1.53114 * 109.16413 * 302.34734 * 14 13 12 24 24 C 1.46845 * 110.99756 * 179.97438 * 11 10 9 25 25 C 1.39425 * 118.33209 * 0.02562 * 10 9 8 26 26 C 1.38227 * 119.26695 * 359.97438 * 25 10 9 27 27 N 1.31654 * 120.99108 * 0.02562 * 26 25 10 28 28 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47092 * 300.00190 * 1 2 3 30 30 H 1.09000 * 109.47086 * 60.00035 * 1 2 3 31 31 H 1.09000 * 109.47421 * 59.99683 * 3 2 1 32 32 H 1.09006 * 109.47000 * 300.00165 * 3 2 1 33 33 H 1.09001 * 109.47121 * 304.99809 * 4 3 2 34 34 H 1.08995 * 109.47644 * 184.99778 * 4 3 2 35 35 H 0.97000 * 119.99749 * 0.02562 * 5 4 3 36 36 H 1.08007 * 120.51791 * 359.97438 * 9 8 6 37 37 H 1.09001 * 109.46522 * 294.17559 * 12 11 10 38 38 H 1.08999 * 109.46484 * 54.15073 * 12 11 10 39 39 H 1.09009 * 109.49978 * 299.23982 * 13 12 11 40 40 H 1.09001 * 109.50473 * 179.12385 * 13 12 11 41 41 H 1.09002 * 109.52368 * 62.25222 * 14 13 12 42 42 H 0.97000 * 120.00223 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.50290 * 297.70996 * 23 14 13 44 44 H 1.09002 * 109.53493 * 177.61299 * 23 14 13 45 45 H 1.08997 * 109.46416 * 305.84753 * 24 11 10 46 46 H 1.08996 * 109.46613 * 65.82477 * 24 11 10 47 47 H 1.08003 * 120.36225 * 179.72599 * 25 10 9 48 48 H 1.07996 * 119.50253 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 5.2882 0.3556 -1.4762 7 8 6.1065 0.6815 -0.6390 8 6 5.7337 -0.2714 -2.7429 9 6 7.0893 -0.4832 -2.9670 10 6 7.4914 -1.0748 -4.1640 11 7 8.8384 -1.3056 -4.4286 12 6 9.6152 -0.0637 -4.3251 13 6 11.1051 -0.3782 -4.4777 14 6 11.3453 -1.0407 -5.8371 15 6 12.8011 -1.4072 -5.9685 16 1 13.0876 -2.4389 -6.1101 17 6 13.7673 -0.4255 -5.9079 18 7 13.4185 0.8308 -5.7359 19 14 15.5720 -0.8799 -6.0702 20 1 15.6981 -2.3481 -6.2538 21 1 16.1546 -0.1818 -7.2443 22 1 16.2978 -0.4711 -4.8408 23 6 10.4881 -2.3054 -5.9383 24 6 9.0160 -1.9351 -5.7434 25 6 6.5104 -1.4295 -5.0891 26 6 5.1825 -1.1860 -4.7927 27 7 4.8339 -0.6257 -3.6535 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3225 0.3039 -1.9208 36 1 7.8195 -0.1941 -2.2255 37 1 9.3068 0.6243 -5.1123 38 1 9.4387 0.3951 -3.3522 39 1 11.4173 -1.0555 -3.6826 40 1 11.6803 0.5456 -4.4164 41 1 11.0695 -0.3491 -6.6331 42 1 14.0983 1.5215 -5.6937 43 1 10.7906 -3.0128 -5.1663 44 1 10.6222 -2.7589 -6.9204 45 1 8.4043 -2.8355 -5.8005 46 1 8.7104 -1.2384 -6.5239 47 1 6.7855 -1.8857 -6.0286 48 1 4.4195 -1.4587 -5.5067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865668169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:41 Heat of formation + Delta-G solvation = -43.889431 kcal Electronic energy + Delta-G solvation = -28071.175611 eV Core-core repulsion = 24125.963261 eV Total energy + Delta-G solvation = -3945.212350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81658 -39.53263 -38.35763 -37.90165 -34.95429 -34.47818 -32.04285 -31.76058 -30.28628 -30.05938 -29.40823 -26.76052 -25.98149 -24.82774 -23.27986 -22.95867 -21.94778 -21.61135 -20.42818 -18.85148 -18.16935 -17.12792 -17.00516 -16.67004 -16.33601 -15.88777 -15.41070 -15.30268 -15.28478 -14.96935 -14.63115 -14.36633 -14.19788 -13.86307 -13.68848 -13.42792 -13.09061 -12.82890 -12.64590 -12.54998 -12.50983 -12.16069 -11.88168 -11.63365 -11.46818 -11.13478 -10.98688 -10.60239 -10.40583 -10.36941 -10.23091 -10.15367 -10.07495 -9.55741 -9.53375 -9.32401 -9.12054 -9.07572 -8.81733 -8.37604 -7.92119 -6.04165 -4.09731 0.72569 1.32930 2.74462 2.94817 3.27504 3.30229 3.36109 3.39652 3.84264 4.06165 4.14355 4.40654 4.49534 4.68484 4.75364 4.85474 4.93533 4.97326 5.01189 5.16484 5.21785 5.25990 5.26570 5.32815 5.41715 5.53774 5.59507 5.71131 5.73652 5.86535 5.96902 6.02352 6.10189 6.24508 6.35995 6.44324 6.52879 6.66320 6.66446 6.91587 6.95495 7.27714 7.32081 7.33852 7.46808 7.69485 7.82015 7.91483 8.03419 8.13857 8.38594 8.93784 9.55582 11.02363 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.002075 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.640008 B =13489.719730 C =14263.376210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.709 5.709 6 C 0.575 3.425 7 O -0.533 6.533 8 C 0.093 3.907 9 C -0.136 4.136 10 C 0.165 3.835 11 N -0.480 5.480 12 C 0.059 3.941 13 C -0.108 4.108 14 C 0.046 3.954 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.109 4.109 24 C 0.053 3.947 25 C -0.213 4.213 26 C 0.121 3.879 27 N -0.492 5.492 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.148 0.852 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.142 0.858 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.927 0.221 6.339 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.362 5.362 6 C 0.361 3.639 7 O -0.409 6.409 8 C -0.044 4.044 9 C -0.160 4.160 10 C 0.056 3.944 11 N -0.193 5.193 12 C -0.065 4.065 13 C -0.146 4.146 14 C 0.027 3.973 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.147 4.147 24 C -0.073 4.073 25 C -0.237 4.237 26 C -0.038 4.038 27 N -0.207 5.207 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.251 0.749 36 H 0.166 0.834 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.160 0.840 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.726 0.327 7.523 25.847 hybrid contribution 1.058 0.134 -1.102 1.533 sum -23.668 0.460 6.422 24.528 Atomic orbital electron populations 1.22766 0.80746 1.03020 1.00008 1.87959 1.19925 1.27343 1.95429 1.22819 0.93063 0.85527 1.01458 1.21417 0.91930 0.99401 0.87595 1.45696 1.07625 1.62344 1.20532 1.17923 0.82426 0.78183 0.85410 1.90797 1.53145 1.51335 1.45598 1.20708 0.90184 0.99377 0.94171 1.21743 0.96218 1.00801 0.97253 1.19462 0.90537 0.91589 0.92781 1.58762 1.03870 1.26026 1.30672 1.22539 0.96820 0.86605 1.00493 1.21780 0.89421 1.03721 0.99711 1.18724 0.94093 0.91142 0.93295 1.21195 0.90851 0.93641 1.49275 0.92550 1.24973 0.98979 0.95006 0.95053 1.69860 1.33204 0.99789 1.50187 0.86552 0.85321 0.78589 0.77633 1.19804 1.21095 1.21026 1.21744 0.91334 1.00969 1.00640 1.22413 1.00247 0.97832 0.86856 1.22498 0.94202 1.06410 1.00558 1.22459 0.94506 0.93772 0.93081 1.67497 1.37674 1.12794 1.02707 0.89463 0.94031 0.93900 0.91454 0.92339 0.90347 0.89659 0.74932 0.83400 0.94198 0.91324 0.93342 0.88140 0.95804 0.93006 0.92149 0.92333 0.91263 0.93831 0.83982 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.29 10.65 -35.23 -0.38 -3.66 16 3 C 0.05 0.32 6.07 37.15 0.23 0.54 16 4 C 0.12 1.08 6.06 -4.04 -0.02 1.06 16 5 N -0.71 -8.01 5.49 -61.14 -0.34 -8.35 16 6 C 0.58 8.42 7.81 -12.17 -0.10 8.33 16 7 O -0.53 -9.27 16.32 5.35 0.09 -9.18 16 8 C 0.09 1.37 6.75 -83.05 -0.56 0.81 16 9 C -0.14 -2.17 8.77 -38.84 -0.34 -2.51 16 10 C 0.17 2.59 5.65 -83.63 -0.47 2.12 16 11 N -0.48 -8.38 4.70 -170.97 -0.80 -9.19 16 12 C 0.06 1.13 5.26 -3.83 -0.02 1.11 16 13 C -0.11 -2.45 5.12 -26.65 -0.14 -2.59 16 14 C 0.05 1.09 2.16 -91.65 -0.20 0.89 16 15 C -0.51 -13.59 8.56 -34.44 -0.29 -13.89 16 16 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 17 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 18 N -0.89 -24.79 11.37 55.43 0.63 -24.16 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.11 -2.14 5.32 -26.65 -0.14 -2.28 16 24 C 0.05 0.87 4.16 -3.83 -0.02 0.85 16 25 C -0.21 -2.77 8.89 -39.14 -0.35 -3.11 16 26 C 0.12 1.42 11.17 -17.63 -0.20 1.22 16 27 N -0.49 -6.50 9.54 -9.89 -0.09 -6.59 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 4.28 7.80 -40.82 -0.32 3.96 16 36 H 0.15 2.47 6.82 -52.48 -0.36 2.12 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.24 6.78 -51.93 -0.35 0.89 16 39 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.10 2.55 6.17 -51.93 -0.32 2.23 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 46 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 47 H 0.14 1.60 5.95 -52.48 -0.31 1.29 16 48 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -30.76 387.12 -9.15 -39.91 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.47 Total: 4.08 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.60 Total: -4.62 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.60 Total: -48.29 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.29 Total: -12.85 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.76 -9.15 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865668169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.981 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds