Wall clock time and date at job start Tue Mar 31 2020 17:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99892 * 2 1 4 4 C 1.53004 * 109.47188 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46644 * 65.00207 * 4 3 2 6 6 C 1.34771 * 119.99968 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.48188 * 120.00462 * 180.02562 * 6 5 4 9 9 C 1.39025 * 119.69200 * 180.25160 * 8 6 5 10 10 C 1.39456 * 118.95599 * 180.24581 * 9 8 6 11 11 N 1.39192 * 120.83551 * 179.78068 * 10 9 8 12 12 C 1.46850 * 110.99959 * 55.76605 * 11 10 9 13 13 C 1.53033 * 109.52626 * 174.16196 * 12 11 10 14 14 C 1.53122 * 109.27554 * 59.17939 * 13 12 11 15 15 C 1.53119 * 109.16403 * 302.34700 * 14 13 12 16 16 H 1.09002 * 109.49978 * 297.67740 * 15 14 13 17 17 C 1.50698 * 109.50336 * 177.59869 * 15 14 13 18 18 H 1.07998 * 119.99514 * 245.42997 * 17 15 14 19 19 C 1.37872 * 120.00285 * 65.43811 * 17 15 14 20 20 N 1.31517 * 120.00001 * 9.55936 * 19 17 15 21 21 Si 1.86802 * 120.00006 * 189.56580 * 19 17 15 22 22 H 1.48497 * 109.47064 * 94.98670 * 21 19 17 23 23 H 1.48502 * 109.47090 * 214.98667 * 21 19 17 24 24 H 1.48501 * 109.46965 * 334.98701 * 21 19 17 25 25 C 1.46843 * 110.99959 * 291.56015 * 11 10 9 26 26 C 1.39422 * 118.33493 * 359.51039 * 10 9 8 27 27 C 1.38228 * 119.26141 * 0.24936 * 26 10 9 28 28 N 1.31650 * 120.99833 * 0.02562 * 27 26 10 29 29 H 1.09005 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47145 * 299.99503 * 1 2 3 31 31 H 1.08996 * 109.47240 * 59.99971 * 1 2 3 32 32 H 1.09004 * 109.47233 * 60.00545 * 3 2 1 33 33 H 1.08995 * 109.47731 * 300.00072 * 3 2 1 34 34 H 1.08999 * 109.47275 * 305.00827 * 4 3 2 35 35 H 1.08991 * 109.47323 * 185.00175 * 4 3 2 36 36 H 0.97003 * 119.99983 * 0.02562 * 5 4 3 37 37 H 1.07999 * 120.52638 * 0.02562 * 9 8 6 38 38 H 1.09003 * 109.45932 * 54.14232 * 12 11 10 39 39 H 1.08998 * 109.46260 * 294.18079 * 12 11 10 40 40 H 1.09002 * 109.50677 * 179.12064 * 13 12 11 41 41 H 1.08999 * 109.50018 * 299.24371 * 13 12 11 42 42 H 1.08998 * 109.52119 * 62.25442 * 14 13 12 43 43 H 1.09008 * 109.52164 * 182.44100 * 14 13 12 44 44 H 0.97001 * 119.99778 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46403 * 65.81985 * 25 11 10 46 46 H 1.08997 * 109.45693 * 305.84775 * 25 11 10 47 47 H 1.07992 * 120.36691 * 180.27132 * 26 10 9 48 48 H 1.08003 * 119.50471 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 5.2893 0.3551 -1.4734 7 8 6.1071 0.6820 -0.6361 8 6 5.7357 -0.2722 -2.7396 9 6 7.0911 -0.4894 -2.9602 10 6 7.4945 -1.0760 -4.1593 11 7 8.8416 -1.3073 -4.4227 12 6 9.4531 -2.1195 -3.3631 13 6 10.8889 -2.4752 -3.7556 14 6 11.6900 -1.1870 -3.9636 15 6 11.0052 -0.3371 -5.0375 16 1 10.9998 -0.8802 -5.9826 17 6 11.7545 0.9595 -5.2065 18 1 11.2815 1.8944 -4.9447 19 6 13.0436 0.9521 -5.6954 20 7 13.5532 -0.1551 -6.1894 21 14 14.0664 2.5147 -5.6560 22 1 14.9079 2.5248 -4.4325 23 1 14.9384 2.5660 -6.8569 24 1 13.1660 3.6956 -5.6472 25 6 9.5660 -0.0435 -4.6079 26 6 6.5143 -1.4303 -5.0853 27 6 5.1861 -1.1862 -4.7901 28 7 4.8366 -0.6257 -3.6513 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.8508 0.5684 0.8426 35 1 3.9785 2.1764 0.0902 36 1 3.3239 0.3034 -1.9195 37 1 7.8204 -0.2051 -2.2161 38 1 8.8761 -3.0344 -3.2282 39 1 9.4608 -1.5545 -2.4311 40 1 11.3476 -3.0650 -2.9620 41 1 10.8810 -3.0521 -4.6804 42 1 11.7309 -0.6286 -3.0284 43 1 12.7015 -1.4350 -4.2854 44 1 14.4603 -0.1603 -6.5330 45 1 9.5732 0.5119 -3.6700 46 1 9.0712 0.5494 -5.3771 47 1 6.7896 -1.8907 -6.0226 48 1 4.4236 -1.4588 -5.5048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865931643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:44 Heat of formation + Delta-G solvation = -45.111875 kcal Electronic energy + Delta-G solvation = -28290.137115 eV Core-core repulsion = 24344.871756 eV Total energy + Delta-G solvation = -3945.265359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78804 -39.44147 -38.32617 -37.91729 -34.96637 -34.24043 -32.34538 -31.61805 -30.14966 -29.95116 -29.61779 -26.76891 -25.01122 -24.70337 -24.28661 -22.70589 -22.13263 -21.48873 -20.47985 -18.81691 -18.07619 -17.13594 -16.95443 -16.56532 -16.15095 -15.98237 -15.43875 -15.33083 -15.30934 -15.00420 -14.69363 -14.29194 -14.13286 -13.85706 -13.63750 -13.39702 -13.00194 -12.72234 -12.60602 -12.50902 -12.45754 -12.17126 -12.01430 -11.81344 -11.64465 -10.98255 -10.83955 -10.76864 -10.42468 -10.24003 -10.16040 -10.02751 -9.71726 -9.65467 -9.38830 -9.33715 -9.10098 -9.08102 -8.80097 -8.35279 -8.07016 -6.04129 -4.05929 0.70222 1.19088 2.72360 2.93742 3.29278 3.30161 3.37625 3.40676 3.87555 4.05778 4.10844 4.45190 4.48230 4.67579 4.79677 4.84905 4.92978 4.97283 5.05728 5.10155 5.21945 5.27898 5.31115 5.37134 5.47895 5.56744 5.60944 5.67058 5.75153 5.92601 6.07669 6.17706 6.22037 6.35208 6.36408 6.50088 6.61005 6.62109 6.65355 6.82399 7.06226 7.24505 7.30271 7.37824 7.69467 7.71850 7.74454 7.94566 8.03255 8.10254 8.40504 8.97656 9.57462 11.04975 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002337 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.874319 B =11975.991274 C =12583.901637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.709 5.709 6 C 0.574 3.426 7 O -0.534 6.534 8 C 0.079 3.921 9 C -0.142 4.142 10 C 0.149 3.851 11 N -0.507 5.507 12 C 0.064 3.936 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.055 3.945 16 H 0.044 0.956 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.072 3.928 26 C -0.131 4.131 27 C 0.100 3.900 28 N -0.472 5.472 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.144 0.856 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.260 0.740 45 H 0.029 0.971 46 H 0.064 0.936 47 H 0.147 0.853 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.989 -1.903 8.268 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.362 5.362 6 C 0.359 3.641 7 O -0.410 6.410 8 C -0.059 4.059 9 C -0.165 4.165 10 C 0.046 3.954 11 N -0.228 5.228 12 C -0.062 4.062 13 C -0.154 4.154 14 C -0.146 4.146 15 C 0.036 3.964 16 H 0.062 0.938 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.715 3.285 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.053 4.053 26 C -0.152 4.152 27 C -0.059 4.059 28 N -0.185 5.185 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.251 0.749 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.165 0.835 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.950 -1.985 8.580 25.518 hybrid contribution 0.930 1.229 0.237 1.559 sum -23.020 -0.756 8.816 24.662 Atomic orbital electron populations 1.22767 0.80723 1.03025 1.00029 1.87956 1.19947 1.27343 1.95435 1.22818 0.93023 0.85531 1.01489 1.21424 0.91955 0.99409 0.87564 1.45701 1.07595 1.62325 1.20569 1.17961 0.82449 0.78210 0.85439 1.90799 1.53196 1.51362 1.45598 1.20787 0.90400 1.00346 0.94343 1.22816 0.96521 0.97902 0.99299 1.19417 0.92155 0.92450 0.91426 1.59744 0.97949 1.20527 1.44609 1.22143 0.96651 0.95974 0.91431 1.21669 0.93164 0.99870 1.00714 1.21638 1.00672 0.93422 0.98878 1.18695 0.86900 0.95654 0.95148 0.93782 1.21068 0.98727 0.92508 1.43429 0.92737 1.24913 0.97966 0.96078 0.94588 1.69973 1.15663 1.26906 1.39725 0.86654 0.80417 0.83875 0.77523 1.20697 1.21280 1.19908 1.22481 0.97227 0.86292 0.99280 1.22374 0.92679 0.99326 1.00785 1.22628 0.94868 0.95096 0.93325 1.67488 1.37907 1.10710 1.02358 0.89456 0.94014 0.93888 0.91442 0.92305 0.90358 0.89651 0.74944 0.83832 0.91916 0.94748 0.92902 0.91643 0.94596 0.90561 0.92994 0.95313 0.91747 0.83544 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.30 10.65 -35.23 -0.38 -3.68 16 3 C 0.05 0.32 6.07 37.16 0.23 0.55 16 4 C 0.12 1.10 6.06 -4.04 -0.02 1.08 16 5 N -0.71 -8.13 5.49 -61.14 -0.34 -8.46 16 6 C 0.57 8.54 7.81 -12.18 -0.10 8.45 16 7 O -0.53 -9.48 16.32 5.35 0.09 -9.39 16 8 C 0.08 1.19 6.75 -83.05 -0.56 0.63 16 9 C -0.14 -2.30 8.38 -38.84 -0.33 -2.62 16 10 C 0.15 2.38 4.69 -83.62 -0.39 1.98 16 11 N -0.51 -9.18 4.64 -170.97 -0.79 -9.97 16 12 C 0.06 1.11 5.07 -3.83 -0.02 1.09 16 13 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 14 C -0.11 -2.45 5.09 -26.61 -0.14 -2.59 16 15 C 0.05 1.34 2.13 -91.69 -0.20 1.14 16 16 H 0.04 1.19 8.09 -51.93 -0.42 0.77 16 17 C -0.52 -14.04 8.48 -34.44 -0.29 -14.34 16 18 H 0.05 1.47 7.77 -52.49 -0.41 1.07 16 19 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 20 N -0.88 -25.04 12.18 55.43 0.68 -24.37 16 21 Si 0.89 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.07 1.51 4.45 -3.84 -0.02 1.49 16 26 C -0.13 -1.72 10.06 -39.14 -0.39 -2.11 16 27 C 0.10 1.15 11.17 -17.63 -0.20 0.96 16 28 N -0.47 -6.19 9.54 -9.89 -0.09 -6.28 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 4.31 7.80 -40.82 -0.32 3.99 16 37 H 0.14 2.49 6.88 -52.49 -0.36 2.13 16 38 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 39 H 0.03 0.60 7.21 -51.93 -0.37 0.23 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.93 6.98 -51.92 -0.36 1.56 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.03 0.62 7.89 -51.93 -0.41 0.21 16 46 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 47 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -31.28 392.88 -9.21 -40.49 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.70 Total: 3.18 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.56 Total: -3.61 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.55 Total: -49.08 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.29 Total: -13.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.28 -9.21 -40.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865931643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.626 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds