Wall clock time and date at job start Tue Mar 31 2020 17:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00142 * 2 1 4 4 H 1.09003 * 109.50592 * 30.08550 * 3 2 1 5 5 C 1.53248 * 109.50700 * 150.09507 * 3 2 1 6 6 C 1.53244 * 109.46997 * 189.63211 * 5 3 2 7 7 N 1.46578 * 108.90252 * 309.60892 * 6 5 3 8 8 C 1.34869 * 127.50115 * 197.12838 * 7 6 5 9 9 C 1.36575 * 106.78637 * 179.86997 * 8 7 6 10 10 C 1.47325 * 126.20786 * 180.02562 * 9 8 7 11 11 O 1.21622 * 120.00017 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99864 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00129 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.01299 * 326.39327 * 13 12 10 15 15 C 1.54260 * 110.02871 * 87.83533 * 13 12 10 16 16 C 1.54892 * 104.19569 * 95.67733 * 15 13 12 17 17 C 1.54897 * 102.74783 * 37.93708 * 16 15 13 18 18 H 1.09008 * 110.48069 * 80.73781 * 17 16 15 19 19 C 1.50697 * 110.59714 * 203.32277 * 17 16 15 20 20 H 1.08003 * 119.99758 * 114.84559 * 19 17 16 21 21 C 1.37879 * 120.00552 * 294.84062 * 19 17 16 22 22 N 1.31512 * 119.99605 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 120.00147 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47364 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46929 * 120.00207 * 23 21 19 26 26 H 1.48496 * 109.47116 * 240.00281 * 23 21 19 27 27 C 1.53872 * 110.03362 * 205.00423 * 13 12 10 28 28 N 1.35888 * 107.58038 * 0.03970 * 9 8 7 29 29 C 1.29798 * 108.85020 * 0.02562 * 28 9 8 30 30 C 1.51102 * 127.17836 * 179.84890 * 29 28 9 31 31 H 1.09009 * 109.47379 * 299.99964 * 1 2 3 32 32 H 1.08999 * 109.47645 * 59.99862 * 1 2 3 33 33 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.38946 * 69.69454 * 5 3 2 35 35 H 1.08997 * 109.58486 * 309.69125 * 5 3 2 36 36 H 1.09002 * 109.58482 * 189.74803 * 6 5 3 37 37 H 1.08996 * 109.58248 * 69.47097 * 6 5 3 38 38 H 1.08004 * 126.60514 * 359.88250 * 8 7 6 39 39 H 0.97005 * 120.00214 * 0.02562 * 12 10 9 40 40 H 1.08997 * 110.48244 * 214.35134 * 15 13 12 41 41 H 1.08997 * 110.49087 * 336.99577 * 15 13 12 42 42 H 1.08994 * 110.75576 * 279.62670 * 16 15 13 43 43 H 1.08999 * 110.91908 * 156.32442 * 16 15 13 44 44 H 0.97001 * 119.99982 * 179.97438 * 22 21 19 45 45 H 1.09007 * 110.03336 * 0.02562 * 27 13 12 46 46 H 1.08996 * 110.03345 * 121.37854 * 27 13 12 47 47 H 1.09002 * 109.71315 * 315.67433 * 30 29 28 48 48 H 1.08996 * 109.71833 * 76.32151 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3461 1.9996 0.5151 5 6 3.3623 1.2636 0.7202 6 6 3.8723 2.6930 0.9326 7 7 3.8080 3.4144 -0.3417 8 6 4.4399 4.5599 -0.6694 9 6 4.0847 4.8524 -1.9553 10 6 4.5337 6.0163 -2.7390 11 8 5.2940 6.8261 -2.2438 12 7 4.1028 6.1830 -4.0051 13 6 4.5497 7.3401 -4.7847 14 1 4.6862 8.2008 -4.1299 15 6 5.8715 7.0107 -5.5087 16 6 5.4285 6.5686 -6.9255 17 6 4.2503 7.5270 -7.2299 18 1 4.6229 8.4950 -7.5651 19 6 3.3339 6.9284 -8.2657 20 1 2.3197 6.6666 -8.0027 21 6 3.7903 6.7151 -9.5492 22 7 5.0255 7.0335 -9.8693 23 14 2.6541 5.9737 -10.8332 24 1 1.3261 5.7072 -10.2245 25 1 2.4982 6.9238 -11.9638 26 1 3.2346 4.7014 -11.3324 27 6 3.5190 7.6684 -5.8790 28 7 3.2416 3.8751 -2.3806 29 6 3.0747 3.0180 -1.4202 30 6 2.2184 1.7733 -1.4458 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 4.0783 0.7089 0.1137 35 1 3.2467 0.7719 1.6861 36 1 4.9035 2.6644 1.2847 37 1 3.2483 3.1977 1.6701 38 1 5.0999 5.1351 -0.0369 39 1 3.4967 5.5369 -4.4003 40 1 6.5057 7.8953 -5.5659 41 1 6.3924 6.1988 -5.0012 42 1 5.0914 5.5321 -6.9191 43 1 6.2346 6.7066 -7.6461 44 1 5.3467 6.8831 -10.7721 45 1 2.6860 6.9670 -5.8298 46 1 3.1553 8.6884 -5.7554 47 1 1.2545 1.9995 -1.9017 48 1 2.7215 0.9925 -2.0161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868656918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:23 Heat of formation + Delta-G solvation = -37.299689 kcal Electronic energy + Delta-G solvation = -28422.675329 eV Core-core repulsion = 24477.748732 eV Total energy + Delta-G solvation = -3944.926597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.61769 -39.35658 -38.83664 -36.89060 -35.76400 -33.47924 -33.12894 -31.83595 -30.29820 -28.75357 -28.06830 -27.33278 -26.80848 -24.72916 -23.84436 -22.82047 -22.49292 -20.14309 -19.65472 -19.24210 -18.95576 -17.68779 -17.26938 -16.51065 -16.40499 -16.19023 -15.77531 -15.48642 -15.20196 -14.71813 -14.49163 -14.26006 -14.03070 -13.89142 -13.78981 -13.63443 -13.34843 -13.00942 -12.64766 -12.34084 -12.20004 -12.03598 -11.85035 -11.61517 -11.41487 -10.96529 -10.91756 -10.74962 -10.46551 -10.40505 -10.35036 -10.20857 -9.92469 -9.84246 -9.58843 -9.47611 -9.12677 -8.72656 -8.65297 -8.35472 -8.26105 -5.94377 -3.96661 1.55654 2.30473 2.33254 2.97966 3.34087 3.42103 3.45888 3.65319 3.77927 3.86146 4.02325 4.04683 4.37399 4.49818 4.51094 4.56962 4.63365 4.76765 4.84276 4.89910 5.09261 5.14450 5.19393 5.23080 5.33492 5.37765 5.43359 5.52661 5.71935 5.78067 5.87469 5.94916 6.34592 6.44648 6.47620 6.55338 6.71314 6.76002 6.78722 6.87145 7.04561 7.07037 7.36684 7.44968 7.67433 7.78647 7.94832 8.09010 8.13694 8.51622 8.68463 9.06117 9.66930 11.15249 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002570 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.139884 B =10890.905849 C =12568.339790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.087 3.913 4 H 0.070 0.930 5 C -0.133 4.133 6 C 0.106 3.894 7 N -0.459 5.459 8 C 0.033 3.967 9 C -0.054 4.054 10 C 0.598 3.402 11 O -0.556 6.556 12 N -0.697 5.697 13 C 0.140 3.860 14 H 0.076 0.924 15 C -0.135 4.135 16 C -0.100 4.100 17 C 0.048 3.952 18 H 0.033 0.967 19 C -0.511 4.511 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.123 4.123 28 N -0.449 5.449 29 C 0.209 3.791 30 C -0.054 4.054 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.189 0.811 39 H 0.408 0.592 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.258 0.742 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.098 0.902 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -13.399 25.492 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.171 4.171 6 C -0.016 4.016 7 N -0.142 5.142 8 C -0.105 4.105 9 C -0.183 4.183 10 C 0.383 3.617 11 O -0.435 6.435 12 N -0.346 5.346 13 C 0.036 3.964 14 H 0.094 0.906 15 C -0.174 4.174 16 C -0.138 4.138 17 C 0.029 3.971 18 H 0.051 0.949 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.161 4.161 28 N -0.168 5.168 29 C -0.055 4.055 30 C -0.093 4.093 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.206 0.794 39 H 0.243 0.757 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.280 -13.050 24.996 28.688 hybrid contribution -0.617 -0.479 -0.193 0.805 sum -5.897 -13.529 24.803 28.861 Atomic orbital electron populations 1.22880 0.80354 1.03223 1.00430 1.87930 1.20247 1.26460 1.94974 1.22148 0.94812 0.85531 0.94657 0.91187 1.21965 0.96665 0.95164 1.03264 1.22030 1.04042 0.92027 0.83507 1.45348 1.35866 1.19627 1.13364 1.22421 1.00943 0.89443 0.97703 1.20797 1.04619 0.98914 0.93994 1.16895 0.80155 0.83102 0.81536 1.90757 1.36793 1.44616 1.71332 1.46108 1.48440 1.27493 1.12589 1.21799 0.95438 0.86978 0.92203 0.90561 1.22836 0.95735 1.00274 0.98555 1.22450 0.99988 0.99245 0.92088 1.19467 0.92353 0.95645 0.89603 0.94925 1.21221 0.97929 1.41085 0.94647 0.92648 1.24984 0.95022 0.95630 0.98378 1.69974 1.15330 1.48067 1.19417 0.86599 0.81141 0.78872 0.81753 1.19818 1.21171 1.21142 1.22614 0.97463 1.00013 0.96021 1.70410 1.16271 1.02612 1.27551 1.23243 0.99508 0.99240 0.83496 1.20692 0.99239 0.91290 0.98085 0.93823 0.93439 0.89211 0.89492 0.88172 0.88100 0.89176 0.79381 0.75655 0.92037 0.93163 0.93471 0.91520 0.93213 0.91932 0.92830 0.88327 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.82 101.05 1.09 1.22 16 2 O -0.38 -2.61 10.36 -35.23 -0.36 -2.97 16 3 C 0.09 0.54 2.62 -26.40 -0.07 0.47 16 4 H 0.07 0.38 7.77 -51.93 -0.40 -0.03 16 5 C -0.13 -0.62 5.60 -26.48 -0.15 -0.77 16 6 C 0.11 0.52 6.95 -3.87 -0.03 0.49 16 7 N -0.46 -4.40 3.11 -113.42 -0.35 -4.75 16 8 C 0.03 0.40 11.32 -16.82 -0.19 0.21 16 9 C -0.05 -0.84 6.98 -82.98 -0.58 -1.42 16 10 C 0.60 10.94 7.81 -12.56 -0.10 10.85 16 11 O -0.56 -11.33 16.54 5.26 0.09 -11.24 16 12 N -0.70 -12.92 5.03 -53.83 -0.27 -13.19 16 13 C 0.14 2.76 3.25 -66.82 -0.22 2.54 16 14 H 0.08 1.51 7.56 -51.93 -0.39 1.12 16 15 C -0.14 -2.81 6.54 -25.07 -0.16 -2.98 16 16 C -0.10 -2.39 5.75 -24.73 -0.14 -2.53 16 17 C 0.05 1.20 2.71 -90.11 -0.24 0.96 16 18 H 0.03 0.89 8.14 -51.92 -0.42 0.46 16 19 C -0.51 -14.07 8.47 -34.44 -0.29 -14.36 16 20 H 0.06 1.51 7.55 -52.48 -0.40 1.11 16 21 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 22 N -0.89 -25.88 12.29 55.43 0.68 -25.20 16 23 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C -0.12 -2.59 6.12 -25.62 -0.16 -2.75 16 28 N -0.45 -6.78 11.00 -7.00 -0.08 -6.85 16 29 C 0.21 2.41 7.64 -154.63 -1.18 1.22 16 30 C -0.05 -0.45 5.96 -27.49 -0.16 -0.61 16 31 H 0.04 0.16 8.09 -51.92 -0.42 -0.26 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.19 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.41 7.42 8.03 -40.82 -0.33 7.09 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.05 1.17 8.05 -51.93 -0.42 0.75 16 43 H 0.07 1.73 7.55 -51.93 -0.39 1.34 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.06 1.31 7.14 -51.92 -0.37 0.94 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -33.83 388.76 -9.88 -43.71 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.75 Total: 3.96 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.68 Total: -5.84 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.02 Total: -49.99 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.28 Total: -14.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.83 -9.88 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868656918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.415 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds