Wall clock time and date at job start Tue Mar 31 2020 17:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 113.99947 * 2 1 4 4 C 1.53003 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.52997 * 112.84796 * 301.30809 * 4 3 2 6 6 C 1.53005 * 109.46722 * 303.81995 * 5 4 3 7 7 N 1.46499 * 109.46875 * 185.27751 * 6 5 4 8 8 C 1.34778 * 119.99960 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00213 * 180.02562 * 8 7 6 11 11 C 1.39458 * 119.99889 * 184.35396 * 10 8 7 12 12 C 1.38647 * 119.64635 * 174.59547 * 11 10 8 13 13 C 1.40818 * 118.67257 * 179.97438 * 12 11 10 14 14 C 1.41542 * 120.99429 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99951 * 149.86660 * 14 13 12 16 16 C 1.40036 * 120.00245 * 329.86537 * 14 13 12 17 17 N 1.30738 * 120.00324 * 167.33858 * 16 14 13 18 18 Si 1.86800 * 119.99809 * 347.33939 * 16 14 13 19 19 H 1.48499 * 109.47376 * 92.59037 * 18 16 14 20 20 H 1.48497 * 109.46964 * 212.59103 * 18 16 14 21 21 H 1.48507 * 109.46968 * 332.59335 * 18 16 14 22 22 C 1.41165 * 118.00645 * 359.97438 * 13 12 11 23 23 C 1.36591 * 119.12816 * 0.02562 * 22 13 12 24 24 N 1.32071 * 121.25657 * 359.74382 * 23 22 13 25 25 C 1.53785 * 113.61393 * 72.49452 * 4 3 2 26 26 C 1.53963 * 87.01636 * 89.23314 * 25 4 3 27 27 C 1.53775 * 113.61871 * 170.10418 * 4 3 2 28 28 H 1.09003 * 109.47139 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46919 * 300.00618 * 1 2 3 30 30 H 1.09001 * 109.46884 * 59.99973 * 1 2 3 31 31 H 1.08997 * 109.47829 * 59.99955 * 3 2 1 32 32 H 1.09003 * 109.47269 * 299.99471 * 3 2 1 33 33 H 1.08997 * 109.47101 * 183.82344 * 5 4 3 34 34 H 1.08996 * 109.47477 * 63.81731 * 5 4 3 35 35 H 1.08997 * 109.47194 * 65.28150 * 6 5 4 36 36 H 1.08996 * 109.46992 * 305.27188 * 6 5 4 37 37 H 0.96998 * 120.00177 * 359.97438 * 7 6 5 38 38 H 0.97001 * 119.99742 * 4.61976 * 10 8 7 39 39 H 1.08001 * 120.65924 * 359.97438 * 12 11 10 40 40 H 0.96995 * 120.00303 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.43362 * 179.97438 * 22 13 12 42 42 H 1.07993 * 119.37249 * 179.97438 * 23 22 13 43 43 H 1.08997 * 113.61612 * 203.74986 * 25 4 3 44 44 H 1.08997 * 113.62003 * 334.66190 * 25 4 3 45 45 H 1.08997 * 113.54045 * 270.81002 * 26 25 4 46 46 H 1.08998 * 113.74255 * 139.94049 * 26 25 4 47 47 H 1.09007 * 113.61288 * 25.35195 * 27 4 3 48 48 H 1.09001 * 113.61584 * 156.16514 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0694 0.4076 1.2056 6 6 3.5774 1.0664 2.4959 7 7 4.1892 0.4002 3.6484 8 6 3.9006 0.8149 4.8979 9 8 3.1322 1.7415 5.0687 10 7 4.4638 0.2023 5.9582 11 6 4.0966 0.5704 7.2522 12 6 4.5947 -0.1388 8.3344 13 6 4.2110 0.2508 9.6321 14 6 4.6896 -0.4389 10.7717 15 1 4.8187 0.0867 11.7062 16 6 4.9957 -1.8028 10.6874 17 7 5.6637 -2.3836 11.6496 18 14 4.4498 -2.7923 9.2001 19 1 5.5326 -2.7969 8.1838 20 1 4.1544 -4.1872 9.6149 21 1 3.2282 -2.1794 8.6190 22 6 3.3347 1.3498 9.7622 23 6 2.8959 1.9872 8.6367 24 7 3.2799 1.5975 7.4346 25 6 4.1167 0.7132 -1.3429 26 6 4.1833 2.1983 -1.7434 27 6 4.2593 2.5196 -0.2414 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.1592 0.4130 1.1876 34 1 3.7104 -0.6207 1.1630 35 1 2.4928 0.9777 2.5586 36 1 3.8564 2.1201 2.4951 37 1 4.8019 -0.3392 3.5122 38 1 5.1273 -0.4918 5.8212 39 1 5.2637 -0.9735 8.1851 40 1 5.8760 -3.3282 11.5910 41 1 3.0148 1.6817 10.7389 42 1 2.2250 2.8282 8.7317 43 1 5.0949 0.2408 -1.2537 44 1 3.4166 0.1299 -1.9409 45 1 3.2739 2.5614 -2.2221 46 1 5.0862 2.4646 -2.2930 47 1 3.6742 3.3924 0.0486 48 1 5.2761 2.5424 0.1507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:39 Heat of formation + Delta-G solvation = -19.031988 kcal Electronic energy + Delta-G solvation = -28237.664158 eV Core-core repulsion = 24293.529708 eV Total energy + Delta-G solvation = -3944.134450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.41174 -39.82500 -38.25622 -37.36908 -35.09920 -34.21623 -33.75846 -31.36384 -31.13471 -28.93341 -28.05679 -26.18449 -26.02523 -25.81626 -24.46900 -22.34541 -22.06934 -21.40039 -20.10221 -18.81905 -18.17658 -17.71179 -16.62739 -16.53735 -16.21023 -15.98827 -15.58578 -15.36477 -15.04443 -14.66374 -14.61174 -14.22866 -14.14296 -14.03969 -13.67063 -13.07415 -12.98378 -12.91743 -12.76064 -12.74203 -12.48116 -12.18393 -11.83156 -11.60691 -11.38831 -11.35391 -10.95970 -10.81805 -10.79488 -10.65023 -10.47387 -10.40862 -10.03062 -9.88225 -9.86881 -9.65431 -9.35355 -8.83879 -8.20005 -7.84111 -7.22255 -7.03324 -4.72423 2.43225 2.65224 2.91971 3.02253 3.14374 3.26525 3.37879 3.75376 3.90001 4.16726 4.26825 4.34897 4.49186 4.56502 4.61478 4.78522 4.95532 5.00606 5.06905 5.13356 5.18787 5.28683 5.31218 5.41473 5.44034 5.44227 5.45274 5.60331 5.62574 5.69005 5.74313 5.85331 5.98308 6.08694 6.11096 6.27834 6.38577 6.42335 6.58627 6.66324 6.87072 6.95310 7.08300 7.23105 7.31954 7.66730 7.96962 8.22572 8.25583 8.46318 8.67130 9.04388 9.51284 9.98160 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.002349 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.323972 B =11918.389684 C =12179.911214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.081 3.919 4 C -0.074 4.074 5 C -0.111 4.111 6 C 0.144 3.856 7 N -0.753 5.753 8 C 0.692 3.308 9 O -0.530 6.530 10 N -0.673 5.673 11 C 0.388 3.612 12 C -0.324 4.324 13 C 0.129 3.871 14 C -0.437 4.437 15 H 0.095 0.905 16 C 0.084 3.916 17 N -0.805 5.805 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.245 1.245 22 C -0.271 4.271 23 C 0.129 3.871 24 N -0.553 5.553 25 C -0.125 4.125 26 C -0.145 4.145 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.391 0.609 38 H 0.404 0.596 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 2.202 -25.069 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.004 3.996 4 C -0.075 4.075 5 C -0.149 4.149 6 C 0.019 3.981 7 N -0.411 5.411 8 C 0.391 3.609 9 O -0.400 6.400 10 N -0.321 5.321 11 C 0.159 3.841 12 C -0.350 4.350 13 C 0.121 3.879 14 C -0.467 4.467 15 H 0.113 0.887 16 C -0.136 4.136 17 N -0.429 5.429 18 Si 0.746 3.254 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.168 1.168 22 C -0.295 4.295 23 C -0.023 4.023 24 N -0.272 5.272 25 C -0.163 4.163 26 C -0.182 4.182 27 C -0.166 4.166 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.224 0.776 38 H 0.238 0.762 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.512 3.203 -25.538 25.976 hybrid contribution 0.661 -1.572 0.152 1.713 sum -2.851 1.631 -25.385 25.597 Atomic orbital electron populations 1.22748 0.80987 1.02818 1.00002 1.87861 1.19550 1.27542 1.95392 1.22315 0.91799 0.84989 1.00484 1.21704 0.93230 0.97172 0.95401 1.21672 1.00479 1.00332 0.92411 1.21113 0.97760 0.96341 0.82843 1.45208 1.52039 1.39243 1.04617 1.16062 0.81789 0.82944 0.80089 1.91015 1.36887 1.28369 1.83762 1.42656 1.44488 1.41153 1.03817 1.17756 0.92756 0.91665 0.81918 1.21198 1.13084 1.08080 0.92616 1.17698 0.87726 0.90938 0.91576 1.19501 1.35694 0.94086 0.97464 0.88663 1.26186 0.91309 0.98694 0.97376 1.69610 1.27253 1.13439 1.32595 0.86213 0.81489 0.77093 0.80592 1.19800 1.21980 1.16788 1.21678 1.05622 1.03670 0.98531 1.21631 0.96295 0.96952 0.87382 1.67325 1.18253 1.16283 1.25363 1.22947 1.01208 0.96365 0.95760 1.22895 1.02037 0.96814 0.96454 1.22994 1.01003 0.96403 0.96236 0.89608 0.93843 0.94269 0.92459 0.93154 0.91211 0.90462 0.91861 0.91956 0.77592 0.76217 0.87470 0.90237 0.87217 0.85394 0.89900 0.91038 0.90352 0.91333 0.91138 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.85 10.30 -35.23 -0.36 -4.22 16 3 C 0.08 0.70 4.69 37.16 0.17 0.87 16 4 C -0.07 -0.59 0.70 -153.70 -0.11 -0.70 16 5 C -0.11 -0.98 4.56 -26.73 -0.12 -1.10 16 6 C 0.14 1.72 5.09 -4.04 -0.02 1.70 16 7 N -0.75 -10.15 5.56 -65.22 -0.36 -10.51 16 8 C 0.69 13.09 8.52 -86.91 -0.74 12.35 16 9 O -0.53 -12.30 14.60 5.29 0.08 -12.23 16 10 N -0.67 -12.92 5.40 -15.86 -0.09 -13.01 16 11 C 0.39 9.13 7.42 -154.68 -1.15 7.98 16 12 C -0.32 -7.82 6.96 -38.46 -0.27 -8.09 16 13 C 0.13 3.29 5.17 -106.55 -0.55 2.74 16 14 C -0.44 -11.60 9.67 -37.65 -0.36 -11.97 16 15 H 0.10 2.63 8.06 -52.49 -0.42 2.20 16 16 C 0.08 2.16 5.48 -17.34 -0.10 2.06 16 17 N -0.80 -20.86 13.92 55.55 0.77 -20.09 16 18 Si 0.92 20.42 24.42 -169.99 -4.15 16.26 16 19 H -0.27 -5.65 6.67 56.52 0.38 -5.27 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.24 -5.74 6.66 56.52 0.38 -5.36 16 22 C -0.27 -6.42 9.85 -39.07 -0.38 -6.81 16 23 C 0.13 2.98 11.10 -18.04 -0.20 2.78 16 24 N -0.55 -13.77 7.86 -12.76 -0.10 -13.87 16 25 C -0.13 -0.88 7.24 -25.82 -0.19 -1.07 16 26 C -0.14 -0.91 7.74 -25.82 -0.20 -1.11 16 27 C -0.13 -0.92 6.88 -25.92 -0.18 -1.10 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 32 H 0.05 0.38 7.31 -51.93 -0.38 0.00 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.08 0.73 7.98 -51.93 -0.41 0.32 16 35 H 0.06 0.86 6.99 -51.93 -0.36 0.50 16 36 H 0.06 0.79 7.84 -51.93 -0.41 0.39 16 37 H 0.39 4.03 8.49 -40.82 -0.35 3.68 16 38 H 0.40 6.20 8.71 -40.82 -0.36 5.84 16 39 H 0.11 2.47 4.41 -52.49 -0.23 2.24 16 40 H 0.29 6.72 8.29 -40.82 -0.34 6.38 16 41 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 43 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 45 H 0.08 0.46 7.60 -51.93 -0.39 0.07 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 48 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -32.88 386.32 -9.17 -42.04 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.50 Total: 9.90 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.28 Total: -0.10 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.22 Total: -57.48 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.29 Total: -16.44 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.15 Total: 16.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -9.17 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.012 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds