Wall clock time and date at job start Tue Mar 31 2020 17:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 113.99947 * 2 1 4 4 C 1.53003 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.52997 * 112.84796 * 301.30809 * 4 3 2 6 6 C 1.53005 * 109.46722 * 303.81995 * 5 4 3 7 7 N 1.46499 * 109.46875 * 185.27751 * 6 5 4 8 8 C 1.34778 * 119.99960 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00213 * 180.02562 * 8 7 6 11 11 C 1.39458 * 119.99889 * 184.35396 * 10 8 7 12 12 C 1.38647 * 119.64635 * 174.59547 * 11 10 8 13 13 C 1.40818 * 118.67257 * 179.97438 * 12 11 10 14 14 C 1.41542 * 120.99429 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99951 * 149.86660 * 14 13 12 16 16 C 1.40036 * 120.00245 * 329.86537 * 14 13 12 17 17 N 1.30738 * 120.00324 * 167.33858 * 16 14 13 18 18 Si 1.86800 * 119.99809 * 347.33939 * 16 14 13 19 19 H 1.48499 * 109.47376 * 92.59037 * 18 16 14 20 20 H 1.48497 * 109.46964 * 212.59103 * 18 16 14 21 21 H 1.48507 * 109.46968 * 332.59335 * 18 16 14 22 22 C 1.41165 * 118.00645 * 359.97438 * 13 12 11 23 23 C 1.36591 * 119.12816 * 0.02562 * 22 13 12 24 24 N 1.32071 * 121.25657 * 359.74382 * 23 22 13 25 25 C 1.53785 * 113.61393 * 72.49452 * 4 3 2 26 26 C 1.53963 * 87.01636 * 89.23314 * 25 4 3 27 27 C 1.53775 * 113.61871 * 170.10418 * 4 3 2 28 28 H 1.09003 * 109.47139 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46919 * 300.00618 * 1 2 3 30 30 H 1.09001 * 109.46884 * 59.99973 * 1 2 3 31 31 H 1.08997 * 109.47829 * 59.99955 * 3 2 1 32 32 H 1.09003 * 109.47269 * 299.99471 * 3 2 1 33 33 H 1.08997 * 109.47101 * 183.82344 * 5 4 3 34 34 H 1.08996 * 109.47477 * 63.81731 * 5 4 3 35 35 H 1.08997 * 109.47194 * 65.28150 * 6 5 4 36 36 H 1.08996 * 109.46992 * 305.27188 * 6 5 4 37 37 H 0.96998 * 120.00177 * 359.97438 * 7 6 5 38 38 H 0.97001 * 119.99742 * 4.61976 * 10 8 7 39 39 H 1.08001 * 120.65924 * 359.97438 * 12 11 10 40 40 H 0.96995 * 120.00303 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.43362 * 179.97438 * 22 13 12 42 42 H 1.07993 * 119.37249 * 179.97438 * 23 22 13 43 43 H 1.08997 * 113.61612 * 203.74986 * 25 4 3 44 44 H 1.08997 * 113.62003 * 334.66190 * 25 4 3 45 45 H 1.08997 * 113.54045 * 270.81002 * 26 25 4 46 46 H 1.08998 * 113.74255 * 139.94049 * 26 25 4 47 47 H 1.09007 * 113.61288 * 25.35195 * 27 4 3 48 48 H 1.09001 * 113.61584 * 156.16514 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0694 0.4076 1.2056 6 6 3.5774 1.0664 2.4959 7 7 4.1892 0.4002 3.6484 8 6 3.9006 0.8149 4.8979 9 8 3.1322 1.7415 5.0687 10 7 4.4638 0.2023 5.9582 11 6 4.0966 0.5704 7.2522 12 6 4.5947 -0.1388 8.3344 13 6 4.2110 0.2508 9.6321 14 6 4.6896 -0.4389 10.7717 15 1 4.8187 0.0867 11.7062 16 6 4.9957 -1.8028 10.6874 17 7 5.6637 -2.3836 11.6496 18 14 4.4498 -2.7923 9.2001 19 1 5.5326 -2.7969 8.1838 20 1 4.1544 -4.1872 9.6149 21 1 3.2282 -2.1794 8.6190 22 6 3.3347 1.3498 9.7622 23 6 2.8959 1.9872 8.6367 24 7 3.2799 1.5975 7.4346 25 6 4.1167 0.7132 -1.3429 26 6 4.1833 2.1983 -1.7434 27 6 4.2593 2.5196 -0.2414 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.1592 0.4130 1.1876 34 1 3.7104 -0.6207 1.1630 35 1 2.4928 0.9777 2.5586 36 1 3.8564 2.1201 2.4951 37 1 4.8019 -0.3392 3.5122 38 1 5.1273 -0.4918 5.8212 39 1 5.2637 -0.9735 8.1851 40 1 5.8760 -3.3282 11.5910 41 1 3.0148 1.6817 10.7389 42 1 2.2250 2.8282 8.7317 43 1 5.0949 0.2408 -1.2537 44 1 3.4166 0.1299 -1.9409 45 1 3.2739 2.5614 -2.2221 46 1 5.0862 2.4646 -2.2930 47 1 3.6742 3.3924 0.0486 48 1 5.2761 2.5424 0.1507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:38 Heat of formation + Delta-G solvation = -40.834618 kcal Electronic energy + Delta-G solvation = -28238.609591 eV Core-core repulsion = 24293.529708 eV Total energy + Delta-G solvation = -3945.079883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.58893 -40.89605 -39.93747 -38.03268 -36.44000 -35.85994 -35.55711 -33.20932 -32.21673 -30.46080 -28.88592 -27.91472 -26.77022 -26.52153 -25.34257 -24.19539 -23.38789 -22.37199 -21.73775 -19.90679 -19.49307 -19.20041 -18.03835 -17.43678 -17.28623 -17.05020 -16.85417 -16.46769 -16.45624 -16.11859 -15.96799 -15.38266 -15.30789 -15.13423 -14.91965 -14.74325 -14.68894 -14.40093 -13.63409 -13.49093 -13.39422 -13.16016 -12.96199 -12.76461 -12.63791 -12.61120 -12.50004 -12.08327 -12.00473 -11.84055 -11.59204 -11.46417 -11.32283 -11.16646 -11.03703 -10.99663 -10.54683 -10.15826 -10.06444 -9.68787 -8.98670 -8.94838 -6.73079 0.60579 0.76592 1.23200 1.39413 1.47802 1.54785 2.09443 2.20201 2.70526 2.74832 3.11714 3.54237 3.55098 3.68682 3.84534 3.98013 4.00504 4.13477 4.25044 4.30806 4.40162 4.44243 4.49248 4.55094 4.59236 4.60024 4.64130 4.66415 4.76704 4.78710 4.83780 4.91847 4.94986 5.06067 5.11459 5.13180 5.14155 5.26164 5.30190 5.43857 5.49042 5.52337 5.56795 5.68177 5.85156 6.11322 6.21972 6.28450 6.52348 6.68789 6.92128 7.52451 7.76213 8.10858 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.002349 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.323972 B =11918.389684 C =12179.911214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.079 3.921 4 C -0.080 4.080 5 C -0.099 4.099 6 C 0.147 3.853 7 N -0.729 5.729 8 C 0.689 3.311 9 O -0.576 6.576 10 N -0.665 5.665 11 C 0.385 3.615 12 C -0.328 4.328 13 C 0.114 3.886 14 C -0.466 4.466 15 H 0.067 0.933 16 C 0.051 3.949 17 N -0.836 5.836 18 Si 0.969 3.031 19 H -0.243 1.243 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.281 4.281 23 C 0.129 3.871 24 N -0.573 5.573 25 C -0.121 4.121 26 C -0.138 4.138 27 C -0.130 4.130 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.411 0.589 38 H 0.422 0.578 39 H 0.119 0.881 40 H 0.298 0.702 41 H 0.122 0.878 42 H 0.158 0.842 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 1.449 -27.944 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.003 3.997 4 C -0.081 4.081 5 C -0.137 4.137 6 C 0.023 3.977 7 N -0.388 5.388 8 C 0.388 3.612 9 O -0.450 6.450 10 N -0.314 5.314 11 C 0.154 3.846 12 C -0.354 4.354 13 C 0.105 3.895 14 C -0.497 4.497 15 H 0.085 0.915 16 C -0.166 4.166 17 N -0.461 5.461 18 Si 0.793 3.207 19 H -0.168 1.168 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.305 4.305 23 C -0.023 4.023 24 N -0.293 5.293 25 C -0.158 4.158 26 C -0.176 4.176 27 C -0.167 4.167 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.247 0.753 38 H 0.260 0.740 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.175 0.825 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.923 2.403 -28.455 28.705 hybrid contribution 0.439 -1.243 1.011 1.661 sum -2.484 1.160 -27.444 27.580 Atomic orbital electron populations 1.22868 0.80151 1.03563 1.00413 1.87826 1.20619 1.28270 1.95481 1.22365 0.92376 0.84603 1.00394 1.21767 0.92843 0.97879 0.95578 1.21606 1.01471 0.99800 0.90816 1.21188 0.96715 0.96335 0.83476 1.45039 1.51460 1.39199 1.03066 1.16251 0.81281 0.82448 0.81174 1.90985 1.38906 1.30475 1.84643 1.42535 1.44789 1.41520 1.02575 1.17957 0.92071 0.91049 0.83487 1.21279 1.13289 1.08542 0.92304 1.17902 0.88066 0.91548 0.91957 1.19482 1.38093 0.95114 0.97012 0.91452 1.26837 0.90998 0.98967 0.99776 1.69623 1.28055 1.14445 1.34003 0.85452 0.80860 0.76148 0.78256 1.16800 1.20481 1.18918 1.21876 1.05575 1.03490 0.99531 1.22097 0.96086 0.97369 0.86725 1.67457 1.18801 1.16942 1.26100 1.22932 1.01342 0.96828 0.94697 1.22875 1.02694 0.96092 0.95900 1.23018 1.00982 0.95691 0.97000 0.88769 0.94502 0.92787 0.93795 0.91997 0.89371 0.90773 0.93725 0.92594 0.75294 0.74029 0.86356 0.89092 0.86024 0.82453 0.89022 0.91584 0.90046 0.90364 0.91533 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.65 10.30 -148.98 -1.53 -9.19 16 3 C 0.08 1.29 4.69 71.98 0.34 1.63 16 4 C -0.08 -1.13 0.70 -51.66 -0.04 -1.17 16 5 C -0.10 -1.53 4.56 30.59 0.14 -1.39 16 6 C 0.15 3.31 5.09 86.38 0.44 3.75 16 7 N -0.73 -18.13 5.56 -478.54 -2.66 -20.79 16 8 C 0.69 25.05 8.52 179.05 1.53 26.57 16 9 O -0.58 -26.45 14.60 -3.97 -0.06 -26.51 16 10 N -0.66 -24.24 5.40 -322.36 -1.74 -25.98 16 11 C 0.38 17.64 7.42 132.76 0.98 18.63 16 12 C -0.33 -15.54 6.96 23.00 0.16 -15.38 16 13 C 0.11 5.82 5.17 -21.11 -0.11 5.71 16 14 C -0.47 -25.35 9.67 23.52 0.23 -25.13 16 15 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 16 C 0.05 2.63 5.48 85.29 0.47 3.10 16 17 N -0.84 -43.59 13.92 21.84 0.30 -43.28 16 18 Si 0.97 40.90 24.42 68.60 1.68 42.58 16 19 H -0.24 -9.10 6.67 99.48 0.66 -8.44 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.26 -12.01 6.66 99.48 0.66 -11.35 16 22 C -0.28 -13.32 9.85 22.60 0.22 -13.09 16 23 C 0.13 5.86 11.10 84.27 0.94 6.79 16 24 N -0.57 -28.09 7.86 -194.27 -1.53 -29.62 16 25 C -0.12 -1.40 7.24 31.18 0.23 -1.18 16 26 C -0.14 -1.40 7.74 31.18 0.24 -1.16 16 27 C -0.13 -1.58 6.88 31.12 0.21 -1.37 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 0.82 6.91 -2.39 -0.02 0.80 16 32 H 0.06 0.84 7.31 -2.39 -0.02 0.83 16 33 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 34 H 0.07 1.23 7.98 -2.39 -0.02 1.21 16 35 H 0.04 1.20 6.99 -2.39 -0.02 1.19 16 36 H 0.06 1.37 7.84 -2.39 -0.02 1.35 16 37 H 0.41 7.16 8.49 -92.71 -0.79 6.37 16 38 H 0.42 11.77 8.71 -92.71 -0.81 10.96 16 39 H 0.12 5.23 4.41 -2.91 -0.01 5.21 16 40 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 41 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 42 H 0.16 6.05 8.06 -2.91 -0.02 6.03 16 43 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 44 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 45 H 0.08 0.78 7.60 -2.39 -0.02 0.76 16 46 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.87 8.10 -2.38 -0.02 0.85 16 48 H 0.09 1.07 8.07 -2.39 -0.02 1.05 16 Total: -1.00 -71.32 386.32 0.99 -70.33 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.70 Total: 34.50 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.23 Total: 7.96 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.62 Total: -119.68 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.59 Total: -35.69 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.68 Total: 42.58 kcal Total: -71.32 0.99 -70.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -71.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds