Wall clock time and date at job start Tue Mar 31 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99526 * 2 1 4 4 C 1.52999 * 109.46736 * 179.97438 * 3 2 1 5 5 C 1.52992 * 110.02092 * 299.14923 * 4 3 2 6 6 N 1.46507 * 109.46841 * 296.11148 * 5 4 3 7 7 C 1.34776 * 119.99781 * 184.94304 * 6 5 4 8 8 O 1.21575 * 120.00367 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99921 * 179.97438 * 7 6 5 10 10 C 1.39457 * 120.00344 * 184.89950 * 9 7 6 11 11 C 1.38641 * 119.65187 * 174.38910 * 10 9 7 12 12 C 1.40821 * 118.67939 * 180.02562 * 11 10 9 13 13 C 1.41536 * 120.99991 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00284 * 207.53315 * 13 12 11 15 15 C 1.40033 * 120.00138 * 27.53751 * 13 12 11 16 16 N 1.30744 * 119.99909 * 8.93057 * 15 13 12 17 17 Si 1.86803 * 120.00001 * 188.93822 * 15 13 12 18 18 H 1.48500 * 109.47014 * 89.99782 * 17 15 13 19 19 H 1.48505 * 109.47023 * 209.99452 * 17 15 13 20 20 H 1.48502 * 109.47133 * 329.99805 * 17 15 13 21 21 C 1.41164 * 118.00243 * 0.02562 * 12 11 10 22 22 C 1.36595 * 119.12582 * 0.02562 * 21 12 11 23 23 N 1.32064 * 121.25903 * 359.71393 * 22 21 12 24 24 C 1.54275 * 110.03206 * 60.53961 * 4 3 2 25 25 C 1.54959 * 104.15985 * 95.75184 * 24 4 3 26 26 C 1.54892 * 102.78178 * 37.88812 * 25 24 4 27 27 C 1.53877 * 110.03389 * 177.75336 * 4 3 2 28 28 H 1.09007 * 109.46861 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47140 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47025 * 60.00438 * 1 2 3 31 31 H 1.08995 * 109.47567 * 60.00175 * 3 2 1 32 32 H 1.08997 * 109.47369 * 299.99540 * 3 2 1 33 33 H 1.09001 * 109.47405 * 176.11303 * 5 4 3 34 34 H 1.08993 * 109.47571 * 56.10846 * 5 4 3 35 35 H 0.96995 * 119.99817 * 4.93456 * 6 5 4 36 36 H 0.97001 * 119.99971 * 4.90300 * 9 7 6 37 37 H 1.08004 * 120.65991 * 0.03003 * 11 10 9 38 38 H 0.96996 * 119.99694 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.43778 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.36657 * 180.02562 * 22 21 12 41 41 H 1.09000 * 110.48569 * 214.39772 * 24 4 3 42 42 H 1.08996 * 110.48401 * 337.04492 * 24 4 3 43 43 H 1.09006 * 110.72424 * 279.57505 * 25 24 4 44 44 H 1.09000 * 110.92176 * 156.29754 * 25 24 4 45 45 H 1.08998 * 110.49080 * 203.40548 * 26 25 24 46 46 H 1.09005 * 110.48488 * 80.75694 * 26 25 24 47 47 H 1.09003 * 110.03179 * 359.95227 * 27 4 3 48 48 H 1.09001 * 110.03448 * 121.38382 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0017 0.4456 1.2564 6 7 3.6584 1.2338 2.4427 7 6 4.0616 0.8261 3.6624 8 8 4.7098 -0.1958 3.7783 9 7 3.7462 1.5514 4.7537 10 6 4.2484 1.1867 6.0025 11 6 4.0164 2.0017 7.0998 12 6 4.5334 1.6140 8.3510 13 6 4.3264 2.4092 9.5034 14 1 5.0404 2.3826 10.3133 15 6 3.1958 3.2304 9.5936 16 7 2.2458 3.1354 8.7003 17 14 3.0449 4.4619 10.9901 18 1 3.6451 5.7556 10.5762 19 1 1.6109 4.6642 11.3188 20 1 3.7586 3.9449 12.1853 21 6 5.2653 0.4089 8.4211 22 6 5.4433 -0.3279 7.2848 23 7 4.9397 0.0634 6.1284 24 6 4.0064 0.4321 -1.2610 25 6 4.3683 1.5588 -2.2615 26 6 5.0133 2.6323 -1.3501 27 6 4.1749 2.5831 -0.0560 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0817 0.3037 1.2145 34 1 3.5096 -0.5254 1.3104 35 1 3.1410 2.0490 2.3502 36 1 3.1697 2.3271 4.6705 37 1 3.4503 2.9157 6.9971 38 1 1.4625 3.7040 8.7630 39 1 5.6798 0.0744 9.3606 40 1 6.0022 -1.2507 7.3341 41 1 4.8833 -0.1755 -1.0376 42 1 3.2025 -0.1878 -1.6578 43 1 3.4719 1.9493 -2.7434 44 1 5.0817 1.2044 -3.0055 45 1 4.9440 3.6170 -1.8124 46 1 6.0530 2.3803 -1.1408 47 1 3.3987 3.3478 -0.0848 48 1 4.8175 2.7353 0.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871733086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:50 Heat of formation + Delta-G solvation = -47.709179 kcal Electronic energy + Delta-G solvation = -28689.427280 eV Core-core repulsion = 24744.049294 eV Total energy + Delta-G solvation = -3945.377986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.23053 -39.28591 -37.87097 -37.18364 -34.48798 -33.96850 -33.65129 -30.86300 -30.41624 -28.98434 -28.51427 -27.14916 -25.97454 -25.61003 -24.12509 -21.95491 -21.65542 -20.84424 -19.92294 -19.14447 -18.02264 -17.59614 -16.47952 -16.46012 -16.04546 -15.84140 -15.29564 -15.15310 -14.87362 -14.61337 -14.34452 -14.14906 -13.97829 -13.54154 -13.39414 -13.19446 -12.84922 -12.75738 -12.56889 -12.35677 -12.10785 -11.62519 -11.39718 -11.34880 -11.22883 -11.20707 -11.14144 -11.01668 -10.88421 -10.78283 -10.61249 -10.23975 -10.09202 -9.84763 -9.69080 -9.49451 -9.36220 -8.66063 -7.91548 -7.66746 -6.97921 -6.70854 -4.59837 2.73984 2.83601 3.02815 3.06403 3.10898 3.27651 3.53933 3.87349 3.95932 4.28398 4.33450 4.48611 4.68095 4.76299 4.92322 4.92913 5.01548 5.08555 5.18297 5.21142 5.24689 5.32153 5.44104 5.48870 5.57635 5.67693 5.70736 5.72907 5.81532 5.87142 5.94698 6.00166 6.09595 6.12806 6.19314 6.58669 6.66355 6.81082 6.84326 6.94905 6.99175 7.16800 7.35012 7.47458 7.53810 7.90931 8.15889 8.46488 8.50551 8.76420 8.79645 9.26876 9.77701 10.13501 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.002503 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.375785 B =11184.245659 C =11566.167189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.074 3.926 4 C -0.070 4.070 5 C 0.157 3.843 6 N -0.752 5.752 7 C 0.691 3.309 8 O -0.533 6.533 9 N -0.669 5.669 10 C 0.355 3.645 11 C -0.242 4.242 12 C 0.143 3.857 13 C -0.456 4.456 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.797 5.797 17 Si 0.915 3.085 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.282 4.282 22 C 0.118 3.882 23 N -0.550 5.550 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.387 0.613 36 H 0.403 0.597 37 H 0.131 0.869 38 H 0.280 0.720 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 2.850 -19.514 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.003 4.003 4 C -0.071 4.071 5 C 0.033 3.967 6 N -0.411 5.411 7 C 0.390 3.610 8 O -0.404 6.404 9 N -0.317 5.317 10 C 0.128 3.872 11 C -0.267 4.267 12 C 0.135 3.865 13 C -0.487 4.487 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.424 5.424 17 Si 0.739 3.261 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.306 4.306 22 C -0.036 4.036 23 N -0.269 5.269 24 C -0.146 4.146 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.157 4.157 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.220 0.780 36 H 0.237 0.763 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.725 1.258 -20.270 20.491 hybrid contribution -1.268 2.172 1.371 2.865 sum -3.993 3.430 -18.899 19.618 Atomic orbital electron populations 1.22725 0.81130 1.02801 0.99779 1.87897 1.19443 1.27525 1.95290 1.22587 0.92849 0.84946 0.99878 1.21504 0.93255 0.96314 0.96005 1.21131 1.00076 0.94261 0.81237 1.45220 1.61155 1.29272 1.05432 1.16074 0.80937 0.83915 0.80026 1.91009 1.41634 1.23423 1.84301 1.42567 1.52238 1.31652 1.05248 1.17985 0.94197 0.91953 0.83029 1.21603 1.11642 1.02579 0.90921 1.17579 0.87350 0.89501 0.92082 1.19568 1.06357 1.20411 1.02388 0.90105 1.25934 0.94801 0.96390 0.97131 1.69752 1.06311 1.33347 1.32975 0.86209 0.78133 0.80525 0.81230 1.19310 1.20267 1.18564 1.21706 1.11745 0.98734 0.98397 1.21490 0.96446 0.97767 0.87886 1.67219 1.16663 1.16131 1.26877 1.22363 1.01571 0.97382 0.93330 1.22522 1.00254 0.95978 0.97483 1.22347 0.99521 0.98962 0.95252 1.22271 0.99366 0.95013 0.99076 0.89640 0.94021 0.94358 0.93349 0.93178 0.91538 0.91140 0.77974 0.76314 0.85135 0.90939 0.88035 0.86039 0.90934 0.90457 0.91761 0.91487 0.91700 0.91371 0.91569 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.21 9.23 -35.23 -0.33 -4.53 16 3 C 0.07 0.68 4.42 37.16 0.16 0.85 16 4 C -0.07 -0.67 0.48 -153.39 -0.07 -0.74 16 5 C 0.16 2.07 4.24 -4.04 -0.02 2.05 16 6 N -0.75 -10.78 4.73 -65.23 -0.31 -11.08 16 7 C 0.69 13.82 8.52 -86.92 -0.74 13.08 16 8 O -0.53 -13.12 14.60 5.30 0.08 -13.04 16 9 N -0.67 -13.60 5.40 -15.87 -0.09 -13.69 16 10 C 0.35 8.84 7.42 -154.68 -1.15 7.69 16 11 C -0.24 -6.21 8.61 -38.46 -0.33 -6.54 16 12 C 0.14 3.82 5.59 -106.55 -0.60 3.22 16 13 C -0.46 -11.82 9.13 -37.65 -0.34 -12.16 16 14 H 0.08 2.01 7.86 -52.48 -0.41 1.60 16 15 C 0.08 1.82 5.32 -17.34 -0.09 1.73 16 16 N -0.80 -19.76 10.74 55.55 0.60 -19.16 16 17 Si 0.91 18.11 29.57 -169.99 -5.03 13.08 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 C -0.28 -7.05 9.85 -39.07 -0.38 -7.44 16 22 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 23 N -0.55 -14.54 7.86 -12.76 -0.10 -14.64 16 24 C -0.11 -0.95 5.82 -25.03 -0.15 -1.10 16 25 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 26 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 27 C -0.12 -1.00 5.51 -25.61 -0.14 -1.14 16 28 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.44 7.03 -51.93 -0.37 0.07 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 34 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 35 H 0.39 4.40 7.07 -40.82 -0.29 4.12 16 36 H 0.40 6.71 8.72 -40.82 -0.36 6.35 16 37 H 0.13 3.32 6.18 -52.48 -0.32 3.00 16 38 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 39 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 41 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 42 H 0.08 0.71 7.25 -51.93 -0.38 0.33 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 48 H 0.08 0.75 7.28 -51.93 -0.38 0.38 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -32.69 386.29 -10.11 -42.80 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.48 Total: 13.01 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.28 Total: 1.44 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.10 Total: -58.58 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.25 Total: -17.58 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.69 -10.11 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.912 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds