Wall clock time and date at job start Tue Mar 31 2020 17:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99526 * 2 1 4 4 C 1.52999 * 109.46736 * 179.97438 * 3 2 1 5 5 C 1.52992 * 110.02092 * 299.14923 * 4 3 2 6 6 N 1.46507 * 109.46841 * 296.11148 * 5 4 3 7 7 C 1.34776 * 119.99781 * 184.94304 * 6 5 4 8 8 O 1.21575 * 120.00367 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99921 * 179.97438 * 7 6 5 10 10 C 1.39457 * 120.00344 * 184.89950 * 9 7 6 11 11 C 1.38641 * 119.65187 * 174.38910 * 10 9 7 12 12 C 1.40821 * 118.67939 * 180.02562 * 11 10 9 13 13 C 1.41536 * 120.99991 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00284 * 207.53315 * 13 12 11 15 15 C 1.40033 * 120.00138 * 27.53751 * 13 12 11 16 16 N 1.30744 * 119.99909 * 8.93057 * 15 13 12 17 17 Si 1.86803 * 120.00001 * 188.93822 * 15 13 12 18 18 H 1.48500 * 109.47014 * 89.99782 * 17 15 13 19 19 H 1.48505 * 109.47023 * 209.99452 * 17 15 13 20 20 H 1.48502 * 109.47133 * 329.99805 * 17 15 13 21 21 C 1.41164 * 118.00243 * 0.02562 * 12 11 10 22 22 C 1.36595 * 119.12582 * 0.02562 * 21 12 11 23 23 N 1.32064 * 121.25903 * 359.71393 * 22 21 12 24 24 C 1.54275 * 110.03206 * 60.53961 * 4 3 2 25 25 C 1.54959 * 104.15985 * 95.75184 * 24 4 3 26 26 C 1.54892 * 102.78178 * 37.88812 * 25 24 4 27 27 C 1.53877 * 110.03389 * 177.75336 * 4 3 2 28 28 H 1.09007 * 109.46861 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47140 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47025 * 60.00438 * 1 2 3 31 31 H 1.08995 * 109.47567 * 60.00175 * 3 2 1 32 32 H 1.08997 * 109.47369 * 299.99540 * 3 2 1 33 33 H 1.09001 * 109.47405 * 176.11303 * 5 4 3 34 34 H 1.08993 * 109.47571 * 56.10846 * 5 4 3 35 35 H 0.96995 * 119.99817 * 4.93456 * 6 5 4 36 36 H 0.97001 * 119.99971 * 4.90300 * 9 7 6 37 37 H 1.08004 * 120.65991 * 0.03003 * 11 10 9 38 38 H 0.96996 * 119.99694 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.43778 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.36657 * 180.02562 * 22 21 12 41 41 H 1.09000 * 110.48569 * 214.39772 * 24 4 3 42 42 H 1.08996 * 110.48401 * 337.04492 * 24 4 3 43 43 H 1.09006 * 110.72424 * 279.57505 * 25 24 4 44 44 H 1.09000 * 110.92176 * 156.29754 * 25 24 4 45 45 H 1.08998 * 110.49080 * 203.40548 * 26 25 24 46 46 H 1.09005 * 110.48488 * 80.75694 * 26 25 24 47 47 H 1.09003 * 110.03179 * 359.95227 * 27 4 3 48 48 H 1.09001 * 110.03448 * 121.38382 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0017 0.4456 1.2564 6 7 3.6584 1.2338 2.4427 7 6 4.0616 0.8261 3.6624 8 8 4.7098 -0.1958 3.7783 9 7 3.7462 1.5514 4.7537 10 6 4.2484 1.1867 6.0025 11 6 4.0164 2.0017 7.0998 12 6 4.5334 1.6140 8.3510 13 6 4.3264 2.4092 9.5034 14 1 5.0404 2.3826 10.3133 15 6 3.1958 3.2304 9.5936 16 7 2.2458 3.1354 8.7003 17 14 3.0449 4.4619 10.9901 18 1 3.6451 5.7556 10.5762 19 1 1.6109 4.6642 11.3188 20 1 3.7586 3.9449 12.1853 21 6 5.2653 0.4089 8.4211 22 6 5.4433 -0.3279 7.2848 23 7 4.9397 0.0634 6.1284 24 6 4.0064 0.4321 -1.2610 25 6 4.3683 1.5588 -2.2615 26 6 5.0133 2.6323 -1.3501 27 6 4.1749 2.5831 -0.0560 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0817 0.3037 1.2145 34 1 3.5096 -0.5254 1.3104 35 1 3.1410 2.0490 2.3502 36 1 3.1697 2.3271 4.6705 37 1 3.4503 2.9157 6.9971 38 1 1.4625 3.7040 8.7630 39 1 5.6798 0.0744 9.3606 40 1 6.0022 -1.2507 7.3341 41 1 4.8833 -0.1755 -1.0376 42 1 3.2025 -0.1878 -1.6578 43 1 3.4719 1.9493 -2.7434 44 1 5.0817 1.2044 -3.0055 45 1 4.9440 3.6170 -1.8124 46 1 6.0530 2.3803 -1.1408 47 1 3.3987 3.3478 -0.0848 48 1 4.8175 2.7353 0.8112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871733086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:47 Heat of formation + Delta-G solvation = -67.660891 kcal Electronic energy + Delta-G solvation = -28690.292451 eV Core-core repulsion = 24744.049294 eV Total energy + Delta-G solvation = -3946.243157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.55732 -40.56415 -39.56307 -37.93921 -36.17124 -35.47596 -35.41033 -32.43385 -31.76593 -30.24971 -29.62123 -28.02076 -27.86064 -26.54302 -24.99728 -23.82271 -23.31511 -21.91058 -21.25681 -20.16149 -19.43654 -19.35749 -17.86894 -17.21938 -17.09580 -17.00185 -16.84469 -16.30122 -16.06798 -16.03878 -15.94402 -15.73148 -15.20385 -14.70485 -14.66304 -14.61482 -14.31562 -14.17034 -13.92126 -13.49768 -13.15932 -12.98102 -12.87117 -12.69116 -12.34397 -12.08939 -11.98588 -11.95037 -11.87475 -11.84155 -11.81702 -11.49367 -11.38913 -11.38154 -11.25940 -11.17891 -10.57955 -10.04631 -9.88714 -9.60427 -8.84329 -8.56341 -6.56800 0.84215 1.01844 1.42264 1.54744 1.58333 1.63872 2.21679 2.29080 2.81125 2.86236 3.21763 3.52346 3.61914 3.76692 3.80009 4.14676 4.17151 4.30250 4.31166 4.40667 4.50757 4.54838 4.57606 4.62307 4.70253 4.78450 4.79965 4.85346 4.85717 4.89232 4.93319 4.97578 5.07678 5.11352 5.12602 5.25495 5.26497 5.32284 5.41556 5.49617 5.50480 5.53737 5.66358 5.84649 5.99544 6.25485 6.28514 6.57477 6.80752 6.84704 6.99636 7.62785 7.90858 8.31485 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.002503 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.375785 B =11184.245659 C =11566.167189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.072 3.928 4 C -0.062 4.062 5 C 0.161 3.839 6 N -0.725 5.725 7 C 0.689 3.311 8 O -0.581 6.581 9 N -0.661 5.661 10 C 0.351 3.649 11 C -0.256 4.256 12 C 0.114 3.886 13 C -0.484 4.484 14 H 0.083 0.917 15 C 0.036 3.964 16 N -0.819 5.819 17 Si 0.991 3.009 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.260 1.260 21 C -0.294 4.294 22 C 0.112 3.888 23 N -0.578 5.578 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.118 4.118 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.405 0.595 36 H 0.419 0.581 37 H 0.129 0.871 38 H 0.291 0.709 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 4.858 -20.357 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.004 4.004 4 C -0.063 4.063 5 C 0.036 3.964 6 N -0.384 5.384 7 C 0.389 3.611 8 O -0.456 6.456 9 N -0.310 5.310 10 C 0.124 3.876 11 C -0.282 4.282 12 C 0.106 3.894 13 C -0.514 4.514 14 H 0.101 0.899 15 C -0.180 4.180 16 N -0.445 5.445 17 Si 0.811 3.189 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.318 4.318 22 C -0.042 4.042 23 N -0.298 5.298 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.155 4.155 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.242 0.758 36 H 0.256 0.744 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.164 0.836 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.847 3.302 -21.173 21.771 hybrid contribution -0.970 1.508 1.586 2.394 sum -4.817 4.809 -19.587 20.736 Atomic orbital electron populations 1.22852 0.79985 1.03376 1.00637 1.87870 1.20840 1.28611 1.95486 1.22674 0.92079 0.84625 1.01023 1.21475 0.93982 0.96738 0.94072 1.21177 0.99042 0.93898 0.82234 1.44980 1.59927 1.29597 1.03875 1.16260 0.80552 0.83273 0.81061 1.90972 1.43871 1.25588 1.85187 1.42432 1.52172 1.32175 1.04204 1.18194 0.93600 0.91430 0.84408 1.21574 1.12564 1.02869 0.91162 1.18021 0.88086 0.90396 0.92918 1.19856 1.07434 1.21660 1.02497 0.89862 1.26816 0.93780 0.97584 0.99798 1.69787 1.06727 1.33718 1.34272 0.85069 0.78481 0.77744 0.77602 1.18452 1.19232 1.18369 1.21891 1.12087 0.98617 0.99215 1.21921 0.96157 0.98544 0.87537 1.67333 1.17791 1.17034 1.27663 1.22354 1.01031 0.97885 0.93418 1.22496 1.00946 0.94971 0.97064 1.22350 0.98892 0.99907 0.94815 1.22265 0.99726 0.94480 0.99067 0.89366 0.94165 0.92416 0.93172 0.90930 0.93007 0.93363 0.75815 0.74391 0.85347 0.89851 0.86553 0.83587 0.91946 0.90760 0.90515 0.90699 0.90139 0.92162 0.89604 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -8.56 9.23 -148.98 -1.38 -9.94 16 3 C 0.07 1.19 4.42 71.98 0.32 1.51 16 4 C -0.06 -1.11 0.48 -51.46 -0.02 -1.14 16 5 C 0.16 4.29 4.24 86.38 0.37 4.66 16 6 N -0.73 -20.70 4.73 -478.55 -2.26 -22.96 16 7 C 0.69 28.00 8.52 179.05 1.53 29.52 16 8 O -0.58 -29.52 14.60 -3.95 -0.06 -29.57 16 9 N -0.66 -27.13 5.40 -322.38 -1.74 -28.87 16 10 C 0.35 17.86 7.42 132.76 0.98 18.84 16 11 C -0.26 -13.42 8.61 23.00 0.20 -13.22 16 12 C 0.11 6.20 5.59 -21.12 -0.12 6.08 16 13 C -0.48 -25.23 9.13 23.52 0.21 -25.02 16 14 H 0.08 4.16 7.86 -2.91 -0.02 4.13 16 15 C 0.04 1.73 5.32 85.29 0.45 2.19 16 16 N -0.82 -40.24 10.74 21.84 0.23 -40.00 16 17 Si 0.99 36.10 29.57 68.60 2.03 38.13 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 19 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 21 C -0.29 -14.97 9.85 22.60 0.22 -14.75 16 22 C 0.11 5.61 11.10 84.27 0.94 6.55 16 23 N -0.58 -31.26 7.86 -194.27 -1.53 -32.79 16 24 C -0.11 -1.80 5.82 31.70 0.18 -1.62 16 25 C -0.12 -1.42 6.91 31.91 0.22 -1.20 16 26 C -0.12 -1.57 6.83 31.67 0.22 -1.35 16 27 C -0.12 -1.75 5.51 31.32 0.17 -1.57 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.80 7.03 -2.39 -0.02 0.78 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.55 8.06 -2.39 -0.02 1.53 16 34 H 0.05 1.53 7.63 -2.39 -0.02 1.51 16 35 H 0.41 8.74 7.07 -92.71 -0.66 8.09 16 36 H 0.42 13.87 8.72 -92.71 -0.81 13.06 16 37 H 0.13 6.65 6.18 -2.91 -0.02 6.63 16 38 H 0.29 12.75 8.29 -92.71 -0.77 11.98 16 39 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 40 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 41 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 42 H 0.07 1.29 7.25 -2.39 -0.02 1.27 16 43 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.09 0.96 7.67 -2.39 -0.02 0.94 16 48 H 0.06 1.13 7.28 -2.39 -0.02 1.11 16 Total: -1.00 -71.93 386.29 1.94 -69.99 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.48 Total: 44.85 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.12 Total: 11.17 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.29 Total: -124.62 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.43 Total: -39.51 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -71.93 1.94 -69.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.325 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds