Wall clock time and date at job start Tue Mar 31 2020 17:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99361 * 2 1 4 4 C 1.53003 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.09001 * 108.44764 * 307.31395 * 4 3 2 6 6 C 1.52566 * 108.51499 * 189.76643 * 4 3 2 7 7 C 1.50879 * 109.36038 * 153.73497 * 6 4 3 8 8 C 1.53951 * 110.09304 * 91.88805 * 7 6 4 9 9 N 1.47580 * 112.12484 * 319.44712 * 8 7 6 10 10 C 1.34771 * 118.62540 * 137.87504 * 9 8 7 11 11 O 1.21585 * 120.00068 * 355.31827 * 10 9 8 12 12 N 1.34782 * 120.00101 * 175.32210 * 10 9 8 13 13 C 1.39456 * 119.99871 * 185.49458 * 12 10 9 14 14 C 1.38651 * 119.64483 * 185.23809 * 13 12 10 15 15 C 1.40816 * 118.67176 * 179.97438 * 14 13 12 16 16 C 1.41552 * 120.99412 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99392 * 145.59237 * 16 15 14 18 18 C 1.40022 * 119.99747 * 325.58905 * 16 15 14 19 19 N 1.30743 * 120.00761 * 4.46885 * 18 16 15 20 20 Si 1.86804 * 119.99616 * 184.46688 * 18 16 15 21 21 H 1.48495 * 109.47066 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46901 * 120.00054 * 20 18 16 23 23 H 1.48499 * 109.47283 * 239.99700 * 20 18 16 24 24 C 1.41165 * 118.00750 * 359.97438 * 15 14 13 25 25 C 1.36583 * 119.12575 * 0.02562 * 24 15 14 26 26 N 1.32074 * 121.26185 * 359.73902 * 25 24 15 27 27 C 1.44583 * 122.72725 * 317.82844 * 9 8 7 28 28 C 1.47097 * 108.51090 * 65.00322 * 4 3 2 29 29 H 1.08997 * 109.47070 * 59.99924 * 1 2 3 30 30 H 1.09002 * 109.46389 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47033 * 299.99423 * 1 2 3 32 32 H 1.09003 * 109.47005 * 60.00391 * 3 2 1 33 33 H 1.08996 * 109.47381 * 299.99931 * 3 2 1 34 34 H 1.09002 * 109.49040 * 273.70492 * 6 4 3 35 35 H 1.09004 * 109.48985 * 33.74905 * 6 4 3 36 36 H 1.08997 * 109.36928 * 212.07266 * 7 6 4 37 37 H 1.08998 * 109.36669 * 331.82749 * 7 6 4 38 38 H 1.09003 * 108.95302 * 80.12243 * 8 7 6 39 39 H 1.09000 * 108.94832 * 198.84145 * 8 7 6 40 40 H 0.96999 * 119.99514 * 5.48810 * 12 10 9 41 41 H 1.08000 * 120.66146 * 0.02562 * 14 13 12 42 42 H 0.96993 * 120.00890 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.43455 * 179.97438 * 24 15 14 44 44 H 1.08003 * 119.36976 * 179.97438 * 25 24 15 45 45 H 1.08999 * 109.45023 * 330.72799 * 27 9 8 46 46 H 1.09000 * 109.44226 * 210.78658 * 27 9 8 47 47 H 1.08996 * 109.33055 * 63.79145 * 28 4 3 48 48 H 1.09004 * 109.32615 * 304.32004 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8295 0.5329 0.8232 6 6 4.1307 2.5679 0.2460 7 6 5.4924 2.4212 0.8791 8 6 6.5809 2.3888 -0.2091 9 7 6.1709 1.5921 -1.3818 10 6 6.4477 2.0655 -2.6128 11 8 6.9468 3.1666 -2.7427 12 7 6.1713 1.3185 -3.7001 13 6 6.5613 1.7573 -4.9651 14 6 6.1790 1.0394 -6.0880 15 6 6.5837 1.5012 -7.3552 16 6 6.2216 0.8063 -8.5341 17 1 6.0200 1.3535 -9.4431 18 6 6.1251 -0.5906 -8.5216 19 7 6.2833 -1.2469 -7.4020 20 14 5.7701 -1.5163 -10.1048 21 1 5.6345 -0.5496 -11.2237 22 1 6.8869 -2.4519 -10.3921 23 1 4.5072 -2.2836 -9.9570 24 6 7.3612 2.6779 -7.4147 25 6 7.6889 3.3176 -6.2533 26 7 7.2883 2.8587 -5.0814 27 6 5.4855 0.3244 -1.2646 28 6 3.9550 0.5602 -1.2633 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 4.2257 3.0965 -0.7025 35 1 3.4782 3.1317 0.9128 36 1 5.6735 3.2639 1.5463 37 1 5.5274 1.4936 1.4504 38 1 6.7909 3.4090 -0.5304 39 1 7.4889 1.9565 0.2113 40 1 5.7012 0.4756 -3.6026 41 1 5.5822 0.1443 -5.9926 42 1 6.2168 -2.2146 -7.3934 43 1 7.6931 3.0668 -8.3660 44 1 8.2840 4.2180 -6.2942 45 1 5.7787 -0.1621 -0.3343 46 1 5.7540 -0.3125 -2.1075 47 1 3.6899 1.2138 -2.0942 48 1 3.4427 -0.3947 -1.3813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871733571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:16 Heat of formation + Delta-G solvation = -32.862994 kcal Electronic energy + Delta-G solvation = -29270.156294 eV Core-core repulsion = 25325.422086 eV Total energy + Delta-G solvation = -3944.734207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49478 -38.94186 -38.07976 -36.91801 -34.40485 -34.07538 -33.69018 -32.51209 -30.45008 -28.73752 -28.31867 -26.72178 -25.94665 -25.56104 -23.78761 -22.41744 -21.85589 -20.69392 -20.36880 -19.02860 -17.97380 -17.53949 -16.69784 -16.20639 -15.95374 -15.79383 -15.35856 -15.20296 -14.76933 -14.47218 -14.26037 -14.14937 -13.97031 -13.58474 -13.31175 -13.10720 -12.82941 -12.62642 -12.52772 -12.45228 -12.32513 -11.91838 -11.67308 -11.43668 -11.34914 -11.16527 -10.92218 -10.87323 -10.76746 -10.72391 -10.55456 -10.24285 -10.08694 -9.87856 -9.66277 -9.45195 -9.35504 -8.34905 -7.84753 -7.70911 -6.97746 -6.64433 -4.60141 2.71238 2.84371 3.00311 3.05419 3.10468 3.26295 3.52907 3.86681 3.92076 4.26297 4.55717 4.57379 4.74745 4.76773 4.89837 5.01253 5.05179 5.08890 5.15770 5.19163 5.35171 5.40737 5.47012 5.51669 5.64644 5.65924 5.69254 5.72947 5.82622 5.90222 6.02962 6.06822 6.11565 6.16985 6.31653 6.55102 6.65862 6.80240 6.88290 6.94127 7.00662 7.20168 7.28481 7.44433 7.54194 7.94135 8.14144 8.39949 8.50773 8.76660 8.82441 9.21137 9.73631 10.20048 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011433 B = 0.003273 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.545695 B = 8553.643357 C =10349.744079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.061 3.939 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.128 4.128 8 C 0.130 3.870 9 N -0.628 5.628 10 C 0.692 3.308 11 O -0.535 6.535 12 N -0.667 5.667 13 C 0.351 3.649 14 C -0.233 4.233 15 C 0.142 3.858 16 C -0.460 4.460 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.806 5.806 20 Si 0.917 3.083 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.276 4.276 25 C 0.114 3.886 26 N -0.547 5.547 27 C 0.112 3.888 28 C -0.136 4.136 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.405 0.595 41 H 0.135 0.865 42 H 0.278 0.722 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 -0.748 16.020 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.015 4.015 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.149 4.149 7 C -0.166 4.166 8 C 0.007 3.993 9 N -0.368 5.368 10 C 0.393 3.607 11 O -0.407 6.407 12 N -0.317 5.317 13 C 0.125 3.875 14 C -0.259 4.259 15 C 0.134 3.866 16 C -0.492 4.492 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.434 5.434 20 Si 0.741 3.259 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.299 4.299 25 C -0.040 4.040 26 N -0.266 5.266 27 C -0.012 4.012 28 C -0.175 4.175 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.242 0.758 41 H 0.153 0.847 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.587 0.134 16.863 18.492 hybrid contribution -0.900 -1.342 -1.372 2.119 sum -8.487 -1.208 15.491 17.705 Atomic orbital electron populations 1.22721 0.81231 1.02673 0.99861 1.87872 1.19494 1.28145 1.95384 1.22802 0.94174 0.84499 1.00053 1.20071 0.92631 0.97401 0.99425 0.90693 1.21071 0.96021 0.95977 1.01793 1.21747 0.94818 1.02412 0.97641 1.21607 0.95603 0.97438 0.84637 1.46984 1.62716 1.22269 1.04791 1.16104 0.79893 0.84488 0.80259 1.90978 1.47043 1.18553 1.84113 1.42797 1.60298 1.24269 1.04322 1.18062 0.94511 0.92116 0.82849 1.21769 1.08944 1.04458 0.90739 1.17617 0.86872 0.89452 0.92699 1.19545 1.41815 0.91250 0.96612 0.90171 1.25889 0.92314 0.98198 0.97849 1.69718 1.37366 1.09273 1.27010 0.86123 0.78562 0.79481 0.81696 1.18493 1.19914 1.19912 1.21786 1.07749 1.02495 0.97908 1.21493 0.97081 0.97734 0.87651 1.67191 1.17701 1.14293 1.27403 1.21462 0.91442 0.85581 1.02754 1.21367 0.96237 1.02167 0.97706 0.94060 0.89690 0.94328 0.93526 0.93264 0.90939 0.91906 0.90635 0.91654 0.89041 0.92561 0.75837 0.84731 0.91092 0.87943 0.86004 0.90413 0.90704 0.91589 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.17 10.00 -35.23 -0.35 -4.52 16 3 C 0.06 0.59 5.17 37.16 0.19 0.78 16 4 C -0.08 -0.75 1.88 -93.67 -0.18 -0.93 16 5 H 0.07 0.71 7.35 -51.93 -0.38 0.32 16 6 C -0.11 -1.09 4.93 -28.02 -0.14 -1.23 16 7 C -0.13 -1.16 5.71 -27.30 -0.16 -1.32 16 8 C 0.13 1.61 6.13 -2.95 -0.02 1.59 16 9 N -0.63 -9.15 2.24 -178.28 -0.40 -9.55 16 10 C 0.69 13.73 8.16 -86.92 -0.71 13.02 16 11 O -0.54 -12.81 13.90 5.29 0.07 -12.74 16 12 N -0.67 -13.67 5.22 -15.86 -0.08 -13.75 16 13 C 0.35 8.71 7.41 -154.69 -1.15 7.56 16 14 C -0.23 -6.00 8.61 -38.45 -0.33 -6.33 16 15 C 0.14 3.78 5.57 -106.55 -0.59 3.18 16 16 C -0.46 -11.96 9.11 -37.65 -0.34 -12.30 16 17 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 18 C 0.07 1.81 5.44 -17.35 -0.09 1.71 16 19 N -0.81 -20.11 10.67 55.55 0.59 -19.52 16 20 Si 0.92 18.36 29.56 -169.99 -5.03 13.33 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.28 -6.84 9.85 -39.07 -0.38 -7.22 16 25 C 0.11 2.79 11.10 -18.05 -0.20 2.59 16 26 N -0.55 -14.28 7.89 -12.76 -0.10 -14.38 16 27 C 0.11 1.31 5.21 -4.09 -0.02 1.29 16 28 C -0.14 -1.51 4.88 -28.58 -0.14 -1.65 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.39 7.82 -51.93 -0.41 -0.01 16 33 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 35 H 0.06 0.53 7.64 -51.93 -0.40 0.13 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.53 7.31 -51.93 -0.38 0.15 16 38 H 0.09 1.34 6.91 -51.93 -0.36 0.98 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 7.10 6.29 -40.82 -0.26 6.84 16 41 H 0.14 3.46 6.23 -52.49 -0.33 3.13 16 42 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 43 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 45 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 46 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -32.07 378.95 -10.10 -42.17 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.37 Total: 11.13 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.15 Total: 2.11 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.01 Total: -57.20 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.28 Total: -17.26 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.07 -10.10 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.306 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds