Wall clock time and date at job start Tue Mar 31 2020 17:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99924 * 2 1 4 4 H 1.09006 * 109.47202 * 34.52406 * 3 2 1 5 5 C 1.53006 * 109.47156 * 154.52173 * 3 2 1 6 6 N 1.46503 * 109.47079 * 293.86682 * 5 3 2 7 7 C 1.34778 * 119.99985 * 180.02562 * 6 5 3 8 8 O 1.21580 * 119.99784 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00095 * 179.97438 * 7 6 5 10 10 C 1.39454 * 120.00078 * 174.91868 * 9 7 6 11 11 C 1.38639 * 119.64993 * 174.31857 * 10 9 7 12 12 C 1.40817 * 118.67969 * 180.24922 * 11 10 9 13 13 C 1.41537 * 121.00273 * 179.72206 * 12 11 10 14 14 H 1.08004 * 120.00251 * 31.17832 * 13 12 11 15 15 C 1.40034 * 120.00325 * 211.17878 * 13 12 11 16 16 N 1.30743 * 120.00009 * 6.95534 * 15 13 12 17 17 Si 1.86804 * 120.00307 * 186.95393 * 15 13 12 18 18 H 1.48502 * 109.46958 * 90.00039 * 17 15 13 19 19 H 1.48500 * 109.47111 * 210.00156 * 17 15 13 20 20 H 1.48506 * 109.46951 * 330.00447 * 17 15 13 21 21 C 1.41169 * 118.00034 * 359.51470 * 12 11 10 22 22 C 1.36593 * 119.12982 * 0.46390 * 21 12 11 23 23 N 1.32069 * 121.25439 * 359.77377 * 22 21 12 24 24 C 1.52992 * 109.47351 * 274.52376 * 3 2 1 25 25 C 1.54268 * 110.03072 * 295.70108 * 24 3 2 26 26 C 1.54889 * 104.19653 * 217.10516 * 25 24 3 27 27 C 1.54894 * 102.74812 * 37.94236 * 26 25 24 28 28 C 1.53877 * 110.03622 * 178.53711 * 24 3 2 29 29 H 1.09000 * 109.46882 * 304.97809 * 1 2 3 30 30 H 1.09000 * 109.47257 * 64.98072 * 1 2 3 31 31 H 1.09008 * 109.47058 * 184.97687 * 1 2 3 32 32 H 1.08998 * 109.47147 * 173.86424 * 5 3 2 33 33 H 1.09006 * 109.46890 * 53.85894 * 5 3 2 34 34 H 0.97005 * 119.99731 * 359.97438 * 6 5 3 35 35 H 0.97004 * 119.99436 * 354.91887 * 9 7 6 36 36 H 1.08005 * 120.66179 * 359.97361 * 11 10 9 37 37 H 0.96996 * 120.00024 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.43567 * 180.23916 * 21 12 11 39 39 H 1.07993 * 119.37255 * 179.78996 * 22 21 12 40 40 H 1.08996 * 110.02191 * 57.14048 * 24 3 2 41 41 H 1.08997 * 110.48948 * 335.78314 * 25 24 3 42 42 H 1.08997 * 110.48556 * 98.42924 * 25 24 3 43 43 H 1.09002 * 110.75839 * 279.62966 * 26 25 24 44 44 H 1.08999 * 110.91550 * 156.33289 * 26 25 24 45 45 H 1.09001 * 110.48101 * 203.38248 * 27 26 25 46 46 H 1.08993 * 110.59814 * 80.79546 * 27 26 25 47 47 H 1.09005 * 110.03299 * 238.57212 * 28 24 3 48 48 H 1.09004 * 110.02617 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3845 1.9817 0.5825 5 6 3.4074 1.2417 0.6205 6 7 3.2962 0.8926 2.0390 7 6 4.4068 0.7793 2.7942 8 8 5.5009 0.9663 2.2980 9 7 4.3046 0.4586 4.0992 10 6 5.4554 0.2374 4.8551 11 6 5.3485 0.0248 6.2209 12 6 6.5241 -0.1912 6.9653 13 6 6.4725 -0.4076 8.3631 14 1 5.6160 -0.8971 8.8026 15 6 7.5321 0.0130 9.1764 16 7 8.5041 0.7244 8.6677 17 14 7.5569 -0.4421 10.9879 18 1 8.2632 -1.7366 11.1634 19 1 8.2637 0.6154 11.7544 20 1 6.1635 -0.5670 11.4860 21 6 7.7554 -0.1900 6.2748 22 6 7.7613 0.0280 4.9264 23 7 6.6393 0.2322 4.2604 24 6 2.1138 1.8176 -1.4379 25 6 3.0827 0.9304 -2.2464 26 6 3.8237 1.9248 -3.1744 27 6 4.0121 3.1649 -2.2656 28 6 2.7047 3.2383 -1.4502 29 1 -0.3633 0.5891 0.8420 30 1 -0.3634 0.4346 -0.9312 31 1 -0.3633 -1.0239 0.0892 32 1 3.8932 2.2124 0.5222 33 1 3.9995 0.4851 0.1056 34 1 2.4232 0.7437 2.4349 35 1 3.4304 0.3818 4.5126 36 1 4.3830 0.0292 6.7052 37 1 9.2378 1.0160 9.2311 38 1 8.6808 -0.3555 6.8063 39 1 8.7013 0.0331 4.3948 40 1 1.1292 1.8187 -1.9055 41 1 3.7877 0.4312 -1.5817 42 1 2.5291 0.1992 -2.8354 43 1 3.2128 2.1715 -4.0428 44 1 4.7883 1.5228 -3.4843 45 1 4.1366 4.0643 -2.8687 46 1 4.8674 3.0290 -1.6039 47 1 2.0071 3.9288 -1.9244 48 1 2.9173 3.5630 -0.4316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871734316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:10 Heat of formation + Delta-G solvation = -46.551860 kcal Electronic energy + Delta-G solvation = -28310.604058 eV Core-core repulsion = 24365.276257 eV Total energy + Delta-G solvation = -3945.327801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17163 -39.39985 -37.91796 -37.12953 -34.66566 -34.06667 -33.48844 -31.01298 -30.60361 -28.95056 -28.60736 -27.34874 -26.16249 -25.87060 -23.15833 -21.90443 -21.64295 -20.84159 -20.13358 -19.49155 -17.91634 -17.81502 -17.09744 -16.54195 -15.81608 -15.76701 -15.23639 -15.01742 -14.92771 -14.52752 -14.38231 -14.22440 -14.02955 -13.80076 -13.43245 -13.22508 -12.95880 -12.74706 -12.33763 -12.19487 -12.08645 -11.88845 -11.47132 -11.38225 -11.28123 -11.23607 -11.21981 -11.13132 -10.94266 -10.74048 -10.53272 -10.33001 -10.00563 -9.80421 -9.67991 -9.50246 -9.35260 -8.74910 -7.92672 -7.68663 -6.97952 -6.70077 -4.58593 2.75482 2.82192 3.01126 3.05620 3.08538 3.26327 3.42451 3.89162 3.93151 4.30596 4.34024 4.39806 4.61251 4.75838 4.76404 4.83939 4.96905 5.04468 5.10604 5.21990 5.32909 5.36840 5.40904 5.46784 5.50074 5.60401 5.70307 5.72631 5.74895 5.80664 5.90736 6.00717 6.04529 6.09797 6.23726 6.54571 6.62922 6.72169 6.80457 6.90579 6.97048 7.17230 7.29640 7.47116 7.57849 7.93861 8.14290 8.38179 8.52501 8.77843 8.80196 9.18774 9.76263 10.18329 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002144 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.786818 B =13058.791311 C =13794.303622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.084 3.916 4 H 0.066 0.934 5 C 0.144 3.856 6 N -0.751 5.751 7 C 0.692 3.308 8 O -0.532 6.532 9 N -0.671 5.671 10 C 0.366 3.634 11 C -0.301 4.301 12 C 0.150 3.850 13 C -0.461 4.461 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.797 5.797 17 Si 0.916 3.084 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.218 4.218 22 C 0.104 3.896 23 N -0.549 5.549 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.391 0.609 35 H 0.402 0.598 36 H 0.102 0.898 37 H 0.281 0.719 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 2.852 -16.410 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C 0.026 3.974 4 H 0.084 0.916 5 C 0.020 3.980 6 N -0.409 5.409 7 C 0.392 3.608 8 O -0.402 6.402 9 N -0.319 5.319 10 C 0.137 3.863 11 C -0.328 4.328 12 C 0.141 3.859 13 C -0.493 4.493 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.423 5.423 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.241 4.241 22 C -0.047 4.047 23 N -0.268 5.268 24 C -0.130 4.130 25 C -0.156 4.156 26 C -0.163 4.163 27 C -0.164 4.164 28 C -0.161 4.161 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.223 0.777 35 H 0.236 0.764 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.566 3.133 -17.795 22.594 hybrid contribution -1.210 -0.087 2.169 2.485 sum -14.775 3.047 -15.626 21.720 Atomic orbital electron populations 1.22796 0.81323 1.02765 0.99837 1.88011 1.19338 1.27109 1.94940 1.22477 0.94527 0.84963 0.95455 0.91633 1.21321 0.94831 1.01896 0.79956 1.45089 1.07921 1.77742 1.10143 1.16049 0.84449 0.79052 0.81297 1.91017 1.24688 1.53218 1.71323 1.42567 1.08255 1.72438 1.08628 1.17766 0.85583 0.96020 0.86937 1.21250 0.99308 1.20404 0.91788 1.17594 0.89996 0.85197 0.93108 1.19513 1.03648 1.34838 0.91273 0.90217 1.25925 0.94165 0.92750 1.01435 1.69749 1.08497 1.25976 1.38077 0.86196 0.79493 0.79024 0.81277 1.19273 1.20238 1.18643 1.21989 0.99878 1.08421 0.93796 1.21634 0.94296 0.96794 0.91958 1.67191 0.96631 1.23725 1.39278 1.22215 1.00089 0.95455 0.95218 1.22453 0.97960 0.97277 0.97904 1.22507 1.00347 0.95741 0.97744 1.22380 0.97733 0.98087 0.98242 1.22238 0.97232 0.95599 1.00999 0.94022 0.94215 0.89631 0.90150 0.90508 0.77659 0.76422 0.88032 0.90762 0.85591 0.85986 0.90652 0.90356 0.91725 0.91876 0.91457 0.91779 0.91021 0.91735 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.84 101.05 1.10 1.30 16 2 O -0.38 -3.75 10.09 -35.23 -0.36 -4.11 16 3 C 0.08 0.77 1.80 -26.73 -0.05 0.72 16 4 H 0.07 0.52 7.77 -51.93 -0.40 0.12 16 5 C 0.14 1.78 4.71 -4.04 -0.02 1.76 16 6 N -0.75 -10.41 5.52 -65.22 -0.36 -10.77 16 7 C 0.69 13.38 8.51 -86.92 -0.74 12.64 16 8 O -0.53 -12.75 14.64 5.30 0.08 -12.68 16 9 N -0.67 -12.90 5.40 -15.87 -0.09 -12.99 16 10 C 0.37 8.83 7.41 -154.68 -1.15 7.69 16 11 C -0.30 -7.36 9.74 -38.46 -0.37 -7.74 16 12 C 0.15 3.99 5.55 -106.55 -0.59 3.40 16 13 C -0.46 -12.00 9.12 -37.65 -0.34 -12.34 16 14 H 0.08 1.97 7.86 -52.48 -0.41 1.56 16 15 C 0.08 1.86 5.33 -17.34 -0.09 1.77 16 16 N -0.80 -20.47 10.90 55.55 0.61 -19.87 16 17 Si 0.92 18.38 29.57 -169.99 -5.03 13.35 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.22 -5.76 8.69 -39.06 -0.34 -6.10 16 22 C 0.10 2.66 11.10 -18.04 -0.20 2.46 16 23 N -0.55 -14.48 7.90 -12.76 -0.10 -14.58 16 24 C -0.11 -0.89 2.90 -89.50 -0.26 -1.15 16 25 C -0.12 -1.05 5.96 -25.07 -0.15 -1.20 16 26 C -0.13 -1.01 6.91 -24.74 -0.17 -1.18 16 27 C -0.13 -1.05 6.83 -25.07 -0.17 -1.22 16 28 C -0.12 -0.96 5.84 -25.62 -0.15 -1.11 16 29 H 0.04 0.24 7.97 -51.93 -0.41 -0.17 16 30 H 0.04 0.23 7.62 -51.93 -0.40 -0.16 16 31 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.08 1.02 6.42 -51.93 -0.33 0.69 16 33 H 0.08 1.09 6.17 -51.93 -0.32 0.77 16 34 H 0.39 4.27 8.49 -40.82 -0.35 3.92 16 35 H 0.40 5.98 8.72 -40.82 -0.36 5.62 16 36 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 37 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 38 H 0.13 3.37 6.40 -52.49 -0.34 3.03 16 39 H 0.12 2.81 8.06 -52.49 -0.42 2.39 16 40 H 0.08 0.55 7.60 -51.93 -0.39 0.15 16 41 H 0.08 0.83 5.58 -51.93 -0.29 0.54 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.58 6.46 -51.93 -0.34 0.24 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -33.01 385.03 -10.42 -43.43 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -7.28 Total: 12.71 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.70 Total: -0.31 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.06 Total: -58.20 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.28 Total: -16.78 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.01 -10.42 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.124 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds