Wall clock time and date at job start Tue Mar 31 2020 17:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99924 * 2 1 4 4 H 1.09006 * 109.47202 * 34.52406 * 3 2 1 5 5 C 1.53006 * 109.47156 * 154.52173 * 3 2 1 6 6 N 1.46503 * 109.47079 * 293.86682 * 5 3 2 7 7 C 1.34778 * 119.99985 * 180.02562 * 6 5 3 8 8 O 1.21580 * 119.99784 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00095 * 179.97438 * 7 6 5 10 10 C 1.39454 * 120.00078 * 174.91868 * 9 7 6 11 11 C 1.38639 * 119.64993 * 174.31857 * 10 9 7 12 12 C 1.40817 * 118.67969 * 180.24922 * 11 10 9 13 13 C 1.41537 * 121.00273 * 179.72206 * 12 11 10 14 14 H 1.08004 * 120.00251 * 31.17832 * 13 12 11 15 15 C 1.40034 * 120.00325 * 211.17878 * 13 12 11 16 16 N 1.30743 * 120.00009 * 6.95534 * 15 13 12 17 17 Si 1.86804 * 120.00307 * 186.95393 * 15 13 12 18 18 H 1.48502 * 109.46958 * 90.00039 * 17 15 13 19 19 H 1.48500 * 109.47111 * 210.00156 * 17 15 13 20 20 H 1.48506 * 109.46951 * 330.00447 * 17 15 13 21 21 C 1.41169 * 118.00034 * 359.51470 * 12 11 10 22 22 C 1.36593 * 119.12982 * 0.46390 * 21 12 11 23 23 N 1.32069 * 121.25439 * 359.77377 * 22 21 12 24 24 C 1.52992 * 109.47351 * 274.52376 * 3 2 1 25 25 C 1.54268 * 110.03072 * 295.70108 * 24 3 2 26 26 C 1.54889 * 104.19653 * 217.10516 * 25 24 3 27 27 C 1.54894 * 102.74812 * 37.94236 * 26 25 24 28 28 C 1.53877 * 110.03622 * 178.53711 * 24 3 2 29 29 H 1.09000 * 109.46882 * 304.97809 * 1 2 3 30 30 H 1.09000 * 109.47257 * 64.98072 * 1 2 3 31 31 H 1.09008 * 109.47058 * 184.97687 * 1 2 3 32 32 H 1.08998 * 109.47147 * 173.86424 * 5 3 2 33 33 H 1.09006 * 109.46890 * 53.85894 * 5 3 2 34 34 H 0.97005 * 119.99731 * 359.97438 * 6 5 3 35 35 H 0.97004 * 119.99436 * 354.91887 * 9 7 6 36 36 H 1.08005 * 120.66179 * 359.97361 * 11 10 9 37 37 H 0.96996 * 120.00024 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.43567 * 180.23916 * 21 12 11 39 39 H 1.07993 * 119.37255 * 179.78996 * 22 21 12 40 40 H 1.08996 * 110.02191 * 57.14048 * 24 3 2 41 41 H 1.08997 * 110.48948 * 335.78314 * 25 24 3 42 42 H 1.08997 * 110.48556 * 98.42924 * 25 24 3 43 43 H 1.09002 * 110.75839 * 279.62966 * 26 25 24 44 44 H 1.08999 * 110.91550 * 156.33289 * 26 25 24 45 45 H 1.09001 * 110.48101 * 203.38248 * 27 26 25 46 46 H 1.08993 * 110.59814 * 80.79546 * 27 26 25 47 47 H 1.09005 * 110.03299 * 238.57212 * 28 24 3 48 48 H 1.09004 * 110.02617 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3845 1.9817 0.5825 5 6 3.4074 1.2417 0.6205 6 7 3.2962 0.8926 2.0390 7 6 4.4068 0.7793 2.7942 8 8 5.5009 0.9663 2.2980 9 7 4.3046 0.4586 4.0992 10 6 5.4554 0.2374 4.8551 11 6 5.3485 0.0248 6.2209 12 6 6.5241 -0.1912 6.9653 13 6 6.4725 -0.4076 8.3631 14 1 5.6160 -0.8971 8.8026 15 6 7.5321 0.0130 9.1764 16 7 8.5041 0.7244 8.6677 17 14 7.5569 -0.4421 10.9879 18 1 8.2632 -1.7366 11.1634 19 1 8.2637 0.6154 11.7544 20 1 6.1635 -0.5670 11.4860 21 6 7.7554 -0.1900 6.2748 22 6 7.7613 0.0280 4.9264 23 7 6.6393 0.2322 4.2604 24 6 2.1138 1.8176 -1.4379 25 6 3.0827 0.9304 -2.2464 26 6 3.8237 1.9248 -3.1744 27 6 4.0121 3.1649 -2.2656 28 6 2.7047 3.2383 -1.4502 29 1 -0.3633 0.5891 0.8420 30 1 -0.3634 0.4346 -0.9312 31 1 -0.3633 -1.0239 0.0892 32 1 3.8932 2.2124 0.5222 33 1 3.9995 0.4851 0.1056 34 1 2.4232 0.7437 2.4349 35 1 3.4304 0.3818 4.5126 36 1 4.3830 0.0292 6.7052 37 1 9.2378 1.0160 9.2311 38 1 8.6808 -0.3555 6.8063 39 1 8.7013 0.0331 4.3948 40 1 1.1292 1.8187 -1.9055 41 1 3.7877 0.4312 -1.5817 42 1 2.5291 0.1992 -2.8354 43 1 3.2128 2.1715 -4.0428 44 1 4.7883 1.5228 -3.4843 45 1 4.1366 4.0643 -2.8687 46 1 4.8674 3.0290 -1.6039 47 1 2.0071 3.9288 -1.9244 48 1 2.9173 3.5630 -0.4316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871734316.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:09 Heat of formation + Delta-G solvation = -67.468695 kcal Electronic energy + Delta-G solvation = -28311.511080 eV Core-core repulsion = 24365.276257 eV Total energy + Delta-G solvation = -3946.234823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50478 -40.53723 -39.63313 -37.80581 -36.31703 -35.52011 -35.29083 -32.56802 -31.92839 -30.29222 -29.60484 -28.16983 -27.86668 -26.93035 -24.14001 -23.66548 -23.35023 -21.79055 -21.45660 -20.35534 -19.69261 -19.22075 -18.07475 -17.66196 -17.25815 -16.77989 -16.52931 -16.41011 -16.12125 -15.95313 -15.76393 -15.51553 -15.16711 -14.92100 -14.75333 -14.64718 -14.28055 -14.17930 -13.88544 -13.46509 -13.13810 -12.87916 -12.84474 -12.80460 -12.56681 -12.10591 -12.08714 -11.93735 -11.87781 -11.83545 -11.77678 -11.47829 -11.40705 -11.29679 -11.23758 -11.17794 -10.44038 -10.05799 -9.91198 -9.63159 -8.84620 -8.57439 -6.57592 0.82957 0.99808 1.41908 1.54696 1.58162 1.60775 2.21755 2.29666 2.75482 2.86890 3.16224 3.62330 3.71025 3.74252 3.74796 4.01543 4.11073 4.13252 4.31715 4.50462 4.53821 4.57505 4.63199 4.66962 4.69002 4.72756 4.79180 4.84032 4.86262 4.92712 4.93433 4.98423 5.04921 5.06118 5.09352 5.26029 5.26328 5.35369 5.44169 5.46804 5.49371 5.54518 5.64227 5.88943 5.97704 6.26650 6.26789 6.55162 6.80121 6.84710 7.00335 7.61410 7.89494 8.33518 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002144 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.786818 B =13058.791311 C =13794.303622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.094 3.906 4 H 0.086 0.914 5 C 0.143 3.857 6 N -0.726 5.726 7 C 0.689 3.311 8 O -0.582 6.582 9 N -0.659 5.659 10 C 0.365 3.635 11 C -0.308 4.308 12 C 0.121 3.879 13 C -0.486 4.486 14 H 0.088 0.912 15 C 0.033 3.967 16 N -0.827 5.827 17 Si 0.993 3.007 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.254 1.254 21 C -0.236 4.236 22 C 0.098 3.902 23 N -0.576 5.576 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.121 4.121 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.423 0.577 36 H 0.126 0.874 37 H 0.290 0.710 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.083 0.917 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 3.224 -16.089 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.036 3.964 4 H 0.104 0.896 5 C 0.019 3.981 6 N -0.384 5.384 7 C 0.389 3.611 8 O -0.457 6.457 9 N -0.309 5.309 10 C 0.135 3.865 11 C -0.334 4.334 12 C 0.113 3.887 13 C -0.517 4.517 14 H 0.106 0.894 15 C -0.183 4.183 16 N -0.454 5.454 17 Si 0.813 3.187 18 H -0.186 1.186 19 H -0.195 1.195 20 H -0.178 1.178 21 C -0.259 4.259 22 C -0.053 4.053 23 N -0.296 5.296 24 C -0.124 4.124 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.168 4.168 28 C -0.159 4.159 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.261 0.739 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.101 0.899 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.306 3.505 -17.500 24.175 hybrid contribution -0.424 -0.197 1.981 2.035 sum -16.730 3.309 -15.519 23.058 Atomic orbital electron populations 1.22983 0.79546 1.03620 1.01113 1.87982 1.21289 1.27381 1.95132 1.22373 0.92571 0.85344 0.96116 0.89580 1.21425 0.97153 1.00804 0.78676 1.44875 1.07252 1.75930 1.10339 1.16253 0.84977 0.78628 0.81290 1.90987 1.27062 1.55413 1.72208 1.42384 1.07973 1.71903 1.08632 1.18012 0.86217 0.94804 0.87493 1.21439 0.99759 1.20207 0.91963 1.18013 0.90810 0.85775 0.94099 1.19840 1.04831 1.35628 0.91413 0.89419 1.26890 0.93192 0.91948 1.06256 1.69821 1.09106 1.26270 1.40177 0.85033 0.79871 0.78835 0.74927 1.18641 1.19477 1.17763 1.21941 0.99720 1.10127 0.94133 1.21890 0.95088 0.96385 0.91925 1.67291 0.97508 1.24864 1.39916 1.22201 1.00685 0.95159 0.94311 1.22429 0.97864 0.97657 0.97871 1.22506 1.00260 0.95313 0.98037 1.22389 0.97443 0.98713 0.98228 1.22239 0.97132 0.95790 1.00693 0.92683 0.92945 0.89122 0.90653 0.92711 0.75485 0.73906 0.85645 0.89957 0.86689 0.84508 0.88763 0.92778 0.91336 0.90310 0.92118 0.90663 0.93187 0.89876 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.84 113.37 1.23 1.48 16 2 O -0.40 -7.19 10.09 -148.98 -1.50 -8.69 16 3 C 0.09 1.55 1.80 30.59 0.05 1.60 16 4 H 0.09 1.09 7.77 -2.38 -0.02 1.07 16 5 C 0.14 3.50 4.71 86.38 0.41 3.91 16 6 N -0.73 -19.44 5.52 -478.52 -2.64 -22.08 16 7 C 0.69 26.59 8.51 179.05 1.52 28.11 16 8 O -0.58 -28.62 14.64 -3.97 -0.06 -28.68 16 9 N -0.66 -24.94 5.40 -322.37 -1.74 -26.67 16 10 C 0.36 17.71 7.41 132.76 0.98 18.69 16 11 C -0.31 -15.06 9.74 23.00 0.22 -14.83 16 12 C 0.12 6.59 5.55 -21.12 -0.12 6.47 16 13 C -0.49 -25.37 9.12 23.52 0.21 -25.15 16 14 H 0.09 4.29 7.86 -2.91 -0.02 4.27 16 15 C 0.03 1.60 5.33 85.29 0.45 2.05 16 16 N -0.83 -42.92 10.90 21.84 0.24 -42.68 16 17 Si 0.99 36.92 29.57 68.60 2.03 38.95 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 19 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 21 C -0.24 -12.88 8.69 22.60 0.20 -12.68 16 22 C 0.10 5.18 11.10 84.27 0.94 6.11 16 23 N -0.58 -31.06 7.90 -194.28 -1.53 -32.59 16 24 C -0.10 -1.48 2.90 -10.07 -0.03 -1.51 16 25 C -0.12 -2.07 5.96 31.67 0.19 -1.89 16 26 C -0.12 -1.90 6.91 31.89 0.22 -1.68 16 27 C -0.13 -2.08 6.83 31.67 0.22 -1.87 16 28 C -0.12 -1.67 5.84 31.32 0.18 -1.48 16 29 H 0.05 0.46 7.97 -2.39 -0.02 0.44 16 30 H 0.05 0.44 7.62 -2.39 -0.02 0.43 16 31 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.08 1.94 6.42 -2.39 -0.02 1.93 16 33 H 0.05 1.62 6.17 -2.38 -0.01 1.60 16 34 H 0.41 8.05 8.49 -92.70 -0.79 7.26 16 35 H 0.42 11.87 8.72 -92.71 -0.81 11.06 16 36 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 37 H 0.29 13.57 8.29 -92.71 -0.77 12.81 16 38 H 0.12 6.41 6.40 -2.91 -0.02 6.39 16 39 H 0.14 6.55 8.06 -2.91 -0.02 6.53 16 40 H 0.09 1.05 7.60 -2.39 -0.02 1.03 16 41 H 0.05 1.20 5.58 -2.39 -0.01 1.18 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.06 0.97 6.46 -2.38 -0.02 0.95 16 Total: -1.00 -73.21 385.03 1.07 -72.14 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.60 Total: 42.98 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.89 Total: 7.34 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -5.68 Total: -124.04 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.56 Total: -37.37 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -73.21 1.07 -72.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871734316.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.666 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds