Wall clock time and date at job start Tue Mar 31 2020 17:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34780 * 120.00064 * 2 1 4 4 O 1.21284 * 119.99638 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99700 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46750 * 179.97438 * 5 3 2 7 7 C 1.46497 * 120.00015 * 270.00104 * 6 5 3 8 8 C 1.50706 * 109.46972 * 269.99750 * 7 6 5 9 9 C 1.38235 * 120.00100 * 269.72743 * 8 7 6 10 10 C 1.38242 * 119.99495 * 179.76499 * 9 8 7 11 11 C 1.38235 * 119.99880 * 0.51271 * 10 9 8 12 12 C 1.38228 * 120.00415 * 359.74202 * 11 10 9 13 13 C 1.38235 * 119.99415 * 90.00514 * 8 7 6 14 14 C 1.34781 * 119.99740 * 90.00485 * 6 5 3 15 15 O 1.21275 * 119.99676 * 180.02562 * 14 6 5 16 16 C 1.50703 * 119.99971 * 359.97438 * 14 6 5 17 17 H 1.09002 * 109.47083 * 320.00492 * 16 14 6 18 18 N 1.46898 * 109.47113 * 200.00293 * 16 14 6 19 19 C 1.53000 * 109.46801 * 80.00207 * 16 14 6 20 20 C 1.52997 * 109.47060 * 184.99876 * 19 16 14 21 21 C 1.50697 * 109.47466 * 180.02562 * 20 19 16 22 22 H 1.08001 * 119.99890 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00428 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99563 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00432 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46616 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47104 * 119.99966 * 25 23 21 28 28 H 1.48489 * 109.47200 * 240.00246 * 25 23 21 29 29 H 1.09004 * 109.46716 * 300.00107 * 1 2 3 30 30 H 1.08998 * 109.47126 * 60.00168 * 1 2 3 31 31 H 1.08995 * 109.46912 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99877 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47388 * 60.00192 * 5 3 2 34 34 H 1.08998 * 109.47292 * 299.99707 * 5 3 2 35 35 H 1.08994 * 109.47518 * 29.99992 * 7 6 5 36 36 H 1.09001 * 109.46944 * 150.00405 * 7 6 5 37 37 H 1.07993 * 120.00184 * 0.02562 * 9 8 7 38 38 H 1.08003 * 119.99550 * 180.23316 * 10 9 8 39 39 H 1.07997 * 119.99564 * 179.72331 * 11 10 9 40 40 H 1.08001 * 120.00537 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.00573 * 0.02562 * 13 8 7 42 42 H 1.00901 * 110.99892 * 176.04953 * 18 16 14 43 43 H 1.00899 * 111.00057 * 300.00501 * 18 16 14 44 44 H 1.09002 * 109.47398 * 305.00045 * 19 16 14 45 45 H 1.09001 * 109.47194 * 65.00225 * 19 16 14 46 46 H 1.09002 * 109.47153 * 300.00319 * 20 19 16 47 47 H 1.08998 * 109.47533 * 59.99948 * 20 19 16 48 48 H 0.97002 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1343 2.5484 -0.0011 7 6 4.3779 3.2387 -1.2700 8 6 5.8011 3.0018 -1.7055 9 6 6.7987 3.8740 -1.3117 10 6 8.1049 3.6538 -1.7073 11 6 8.4117 2.5676 -2.5053 12 6 7.4133 1.6985 -2.9035 13 6 6.1079 1.9156 -2.5036 14 6 4.3594 3.1839 1.1660 15 8 4.7633 4.3275 1.1655 16 6 4.1083 2.4739 2.4713 17 1 3.1975 1.8803 2.3927 18 7 3.9564 3.4639 3.5459 19 6 5.2901 1.5551 2.7876 20 6 4.9813 0.7420 4.0463 21 6 6.1456 -0.1625 4.3583 22 1 7.0187 -0.1576 3.7226 23 6 6.0967 -0.9956 5.4559 24 7 5.0336 -1.0011 6.2302 25 14 7.5395 -2.1173 5.8422 26 1 8.6038 -1.9227 4.8251 27 1 8.0753 -1.7891 7.1877 28 1 7.0867 -3.5313 5.8211 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9501 -0.8401 0.0004 33 1 4.0090 0.6535 -0.8909 34 1 4.0096 0.6531 0.8891 35 1 3.6969 2.8545 -2.0293 36 1 4.2111 4.3080 -1.1398 37 1 6.5584 4.7248 -0.6916 38 1 8.8850 4.3331 -1.3965 39 1 9.4315 2.3982 -2.8180 40 1 7.6529 0.8501 -3.5273 41 1 5.3277 1.2369 -2.8153 42 1 3.7233 3.0163 4.4196 43 1 4.7883 4.0273 3.6388 44 1 5.4585 0.8782 1.9500 45 1 6.1837 2.1567 2.9539 46 1 4.8130 1.4189 4.8839 47 1 4.0877 0.1404 3.8802 48 1 4.9993 -1.5870 7.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877289107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:21 Heat of formation + Delta-G solvation = -48.934427 kcal Electronic energy + Delta-G solvation = -29515.489302 eV Core-core repulsion = 25570.058185 eV Total energy + Delta-G solvation = -3945.431117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55939 -39.27043 -38.80242 -35.71587 -35.37191 -34.59575 -32.90334 -31.93717 -30.92390 -29.92006 -28.96184 -27.37062 -26.03315 -25.35985 -23.48938 -22.59543 -21.42893 -20.96514 -20.32988 -18.99679 -17.68819 -17.44141 -16.80163 -16.50126 -16.20849 -15.53781 -15.36777 -15.20498 -15.10129 -14.69147 -14.42534 -14.26880 -14.07878 -13.66263 -13.45424 -13.29455 -13.22328 -12.99090 -12.76264 -12.54821 -12.39561 -12.16583 -12.09150 -11.90026 -11.67104 -11.30540 -11.08731 -11.00024 -10.95320 -10.69132 -10.20780 -9.99700 -9.93115 -9.32987 -9.24504 -9.22800 -8.94348 -8.80569 -8.64031 -8.47766 -8.14424 -6.12013 -4.15346 1.23769 1.38324 2.54888 2.72509 3.00647 3.23025 3.31617 3.35253 3.35352 3.84266 4.35951 4.58830 4.64702 4.77931 4.86280 4.89925 4.96066 5.08807 5.12518 5.19763 5.21719 5.24703 5.28763 5.38653 5.44671 5.57142 5.62266 5.67821 5.70797 5.74027 5.95135 6.02859 6.22352 6.26416 6.40027 6.42010 6.49058 6.51146 6.59780 6.82309 6.96826 7.25686 7.39358 7.48033 7.56168 7.63237 7.85069 7.93912 8.12876 8.27202 8.43717 8.90960 9.49941 10.98784 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007776 B = 0.004235 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.805396 B = 6609.477465 C = 8304.437851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.490 3.510 4 O -0.523 6.523 5 C 0.083 3.917 6 N -0.592 5.592 7 C 0.160 3.840 8 C -0.105 4.105 9 C -0.093 4.093 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.125 4.125 13 C -0.109 4.109 14 C 0.538 3.462 15 O -0.528 6.528 16 C 0.076 3.924 17 H 0.090 0.910 18 N -0.828 5.828 19 C -0.140 4.140 20 C 0.025 3.975 21 C -0.523 4.523 22 H 0.055 0.945 23 C 0.060 3.940 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.404 0.596 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.353 0.647 43 H 0.345 0.655 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 1.217 -18.686 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.275 3.725 4 O -0.398 6.398 5 C -0.045 4.045 6 N -0.325 5.325 7 C 0.038 3.962 8 C -0.106 4.106 9 C -0.111 4.111 10 C -0.140 4.140 11 C -0.137 4.137 12 C -0.143 4.143 13 C -0.128 4.128 14 C 0.327 3.673 15 O -0.403 6.403 16 C -0.039 4.039 17 H 0.108 0.892 18 N -0.360 5.360 19 C -0.179 4.179 20 C -0.012 4.012 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.169 0.831 43 H 0.158 0.842 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.259 2.868 -18.941 19.432 hybrid contribution 1.728 -1.899 0.757 2.677 sum -1.530 0.969 -18.184 18.274 Atomic orbital electron populations 1.21520 0.79563 1.02189 1.02282 1.45794 1.07857 1.08791 1.76425 1.21388 0.90924 0.83975 0.76246 1.90747 1.70043 1.31129 1.47901 1.21636 0.90723 0.85470 1.06669 1.47451 1.66050 1.13083 1.05892 1.20272 0.91505 0.99508 0.84938 1.20282 0.96325 0.95814 0.98172 1.21251 0.92465 0.99383 0.98040 1.21192 0.96573 0.98001 0.98264 1.21157 0.99156 0.95140 0.98246 1.21088 0.93062 0.99489 1.00636 1.21013 0.96607 0.96970 0.98173 1.20810 0.75364 0.86186 0.84928 1.90597 1.45106 1.17561 1.87006 1.21481 1.00187 0.92821 0.89444 0.89164 1.58698 1.43176 1.24952 1.09163 1.22459 0.96048 0.97882 1.01541 1.19101 0.97190 0.94243 0.90673 1.21200 1.02333 1.21837 1.10729 0.92645 1.25003 0.95921 0.97159 0.96127 1.69964 1.28164 1.38888 1.16092 0.86551 0.82707 0.80515 0.78352 1.19737 1.20935 1.20945 0.92088 0.92449 0.90636 0.76212 0.87398 0.85898 0.90047 0.88811 0.85353 0.86157 0.86316 0.86217 0.86387 0.83121 0.84154 0.92561 0.92418 0.96329 0.96466 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.85 0.64 1.41 16 2 N -0.74 -7.04 5.71 -67.07 -0.38 -7.43 16 3 C 0.49 6.29 7.38 -10.99 -0.08 6.21 16 4 O -0.52 -8.92 16.43 5.55 0.09 -8.83 16 5 C 0.08 0.97 5.46 -5.19 -0.03 0.94 16 6 N -0.59 -8.53 1.94 -176.43 -0.34 -8.88 16 7 C 0.16 2.06 5.53 -5.19 -0.03 2.03 16 8 C -0.10 -1.30 5.46 -104.62 -0.57 -1.87 16 9 C -0.09 -1.23 9.70 -39.58 -0.38 -1.61 16 10 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 11 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 12 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 13 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 14 C 0.54 9.56 6.92 -10.98 -0.08 9.49 16 15 O -0.53 -10.56 15.38 5.56 0.09 -10.48 16 16 C 0.08 1.37 2.37 -68.86 -0.16 1.21 16 17 H 0.09 1.64 6.77 -51.93 -0.35 1.29 16 18 N -0.83 -15.22 8.94 -5.65 -0.05 -15.27 16 19 C -0.14 -2.73 4.45 -26.73 -0.12 -2.85 16 20 C 0.03 0.60 4.74 -27.89 -0.13 0.46 16 21 C -0.52 -13.97 9.11 -34.44 -0.31 -14.29 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 25 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 2.71 8.83 -40.82 -0.36 2.35 16 33 H 0.11 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.12 1.52 4.83 -51.93 -0.25 1.27 16 35 H 0.08 0.88 8.02 -51.93 -0.42 0.47 16 36 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 37 H 0.13 1.84 7.61 -52.49 -0.40 1.44 16 38 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.35 6.44 7.55 -39.29 -0.30 6.14 16 43 H 0.35 6.30 8.58 -39.29 -0.34 5.96 16 44 H 0.06 1.03 6.43 -51.93 -0.33 0.69 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -34.56 399.58 -9.04 -43.60 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -7.25 Total: 14.25 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.93 Total: -4.04 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.04 Total: -56.34 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.56 -9.04 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877289107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.333 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds