Wall clock time and date at job start Tue Mar 31 2020 17:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34780 * 120.00064 * 2 1 4 4 O 1.21284 * 119.99638 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99700 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46750 * 179.97438 * 5 3 2 7 7 C 1.46497 * 120.00015 * 270.00104 * 6 5 3 8 8 C 1.50706 * 109.46972 * 269.99750 * 7 6 5 9 9 C 1.38235 * 120.00100 * 269.72743 * 8 7 6 10 10 C 1.38242 * 119.99495 * 179.76499 * 9 8 7 11 11 C 1.38235 * 119.99880 * 0.51271 * 10 9 8 12 12 C 1.38228 * 120.00415 * 359.74202 * 11 10 9 13 13 C 1.38235 * 119.99415 * 90.00514 * 8 7 6 14 14 C 1.34781 * 119.99740 * 90.00485 * 6 5 3 15 15 O 1.21275 * 119.99676 * 180.02562 * 14 6 5 16 16 C 1.50703 * 119.99971 * 359.97438 * 14 6 5 17 17 H 1.09002 * 109.47083 * 320.00492 * 16 14 6 18 18 N 1.46898 * 109.47113 * 200.00293 * 16 14 6 19 19 C 1.53000 * 109.46801 * 80.00207 * 16 14 6 20 20 C 1.52997 * 109.47060 * 184.99876 * 19 16 14 21 21 C 1.50697 * 109.47466 * 180.02562 * 20 19 16 22 22 H 1.08001 * 119.99890 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00428 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99563 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00432 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46616 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47104 * 119.99966 * 25 23 21 28 28 H 1.48489 * 109.47200 * 240.00246 * 25 23 21 29 29 H 1.09004 * 109.46716 * 300.00107 * 1 2 3 30 30 H 1.08998 * 109.47126 * 60.00168 * 1 2 3 31 31 H 1.08995 * 109.46912 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99877 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47388 * 60.00192 * 5 3 2 34 34 H 1.08998 * 109.47292 * 299.99707 * 5 3 2 35 35 H 1.08994 * 109.47518 * 29.99992 * 7 6 5 36 36 H 1.09001 * 109.46944 * 150.00405 * 7 6 5 37 37 H 1.07993 * 120.00184 * 0.02562 * 9 8 7 38 38 H 1.08003 * 119.99550 * 180.23316 * 10 9 8 39 39 H 1.07997 * 119.99564 * 179.72331 * 11 10 9 40 40 H 1.08001 * 120.00537 * 179.97438 * 12 11 10 41 41 H 1.08004 * 120.00573 * 0.02562 * 13 8 7 42 42 H 1.00901 * 110.99892 * 176.04953 * 18 16 14 43 43 H 1.00899 * 111.00057 * 300.00501 * 18 16 14 44 44 H 1.09002 * 109.47398 * 305.00045 * 19 16 14 45 45 H 1.09001 * 109.47194 * 65.00225 * 19 16 14 46 46 H 1.09002 * 109.47153 * 300.00319 * 20 19 16 47 47 H 1.08998 * 109.47533 * 59.99948 * 20 19 16 48 48 H 0.97002 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1343 2.5484 -0.0011 7 6 4.3779 3.2387 -1.2700 8 6 5.8011 3.0018 -1.7055 9 6 6.7987 3.8740 -1.3117 10 6 8.1049 3.6538 -1.7073 11 6 8.4117 2.5676 -2.5053 12 6 7.4133 1.6985 -2.9035 13 6 6.1079 1.9156 -2.5036 14 6 4.3594 3.1839 1.1660 15 8 4.7633 4.3275 1.1655 16 6 4.1083 2.4739 2.4713 17 1 3.1975 1.8803 2.3927 18 7 3.9564 3.4639 3.5459 19 6 5.2901 1.5551 2.7876 20 6 4.9813 0.7420 4.0463 21 6 6.1456 -0.1625 4.3583 22 1 7.0187 -0.1576 3.7226 23 6 6.0967 -0.9956 5.4559 24 7 5.0336 -1.0011 6.2302 25 14 7.5395 -2.1173 5.8422 26 1 8.6038 -1.9227 4.8251 27 1 8.0753 -1.7891 7.1877 28 1 7.0867 -3.5313 5.8211 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9501 -0.8401 0.0004 33 1 4.0090 0.6535 -0.8909 34 1 4.0096 0.6531 0.8891 35 1 3.6969 2.8545 -2.0293 36 1 4.2111 4.3080 -1.1398 37 1 6.5584 4.7248 -0.6916 38 1 8.8850 4.3331 -1.3965 39 1 9.4315 2.3982 -2.8180 40 1 7.6529 0.8501 -3.5273 41 1 5.3277 1.2369 -2.8153 42 1 3.7233 3.0163 4.4196 43 1 4.7883 4.0273 3.6388 44 1 5.4585 0.8782 1.9500 45 1 6.1837 2.1567 2.9539 46 1 4.8130 1.4189 4.8839 47 1 4.0877 0.1404 3.8802 48 1 4.9993 -1.5870 7.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877289107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:20 Heat of formation + Delta-G solvation = -73.076791 kcal Electronic energy + Delta-G solvation = -29516.536194 eV Core-core repulsion = 25570.058185 eV Total energy + Delta-G solvation = -3946.478008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73466 -40.27093 -39.86699 -37.22285 -36.63795 -35.55327 -34.86173 -32.89721 -31.76679 -31.72397 -29.91890 -28.76724 -27.18675 -26.61334 -25.06017 -23.43745 -22.61126 -22.10775 -21.67653 -20.25453 -18.98691 -18.54901 -18.28816 -17.73937 -17.39751 -16.67511 -16.45850 -16.32091 -16.20128 -16.07969 -15.75660 -15.62062 -15.45085 -14.91267 -14.63043 -14.41484 -14.23811 -14.15624 -14.10402 -13.82566 -13.48476 -13.43475 -13.12752 -13.05819 -12.98555 -12.82326 -12.66159 -12.49435 -12.18735 -11.85401 -11.82094 -11.72301 -11.28791 -11.26025 -10.79412 -10.55534 -10.11268 -9.83308 -9.79120 -9.76459 -9.59331 -8.19977 -6.30383 0.36363 0.53067 1.39898 1.42441 1.47620 1.53827 1.56804 1.84019 2.40165 2.41289 2.96021 3.14110 3.38425 3.67751 3.77759 3.88695 3.93275 3.98482 4.04409 4.14750 4.17952 4.25443 4.30109 4.35516 4.50742 4.58166 4.62899 4.65249 4.73601 4.76682 4.81258 4.97767 5.04837 5.10953 5.18112 5.35311 5.44506 5.47217 5.57864 5.62454 5.64555 5.69815 5.80561 5.97587 6.13775 6.20085 6.22985 6.42861 6.54973 6.84633 7.08523 7.24588 7.39114 8.90996 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007776 B = 0.004235 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.805396 B = 6609.477465 C = 8304.437851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.720 5.720 3 C 0.489 3.511 4 O -0.573 6.573 5 C 0.080 3.920 6 N -0.585 5.585 7 C 0.162 3.838 8 C -0.115 4.115 9 C -0.118 4.118 10 C -0.136 4.136 11 C -0.122 4.122 12 C -0.125 4.125 13 C -0.107 4.107 14 C 0.533 3.467 15 O -0.559 6.559 16 C 0.084 3.916 17 H 0.090 0.910 18 N -0.832 5.832 19 C -0.119 4.119 20 C 0.033 3.967 21 C -0.539 4.539 22 H 0.056 0.944 23 C 0.009 3.991 24 N -0.927 5.927 25 Si 0.957 3.043 26 H -0.265 1.265 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.421 0.579 33 H 0.153 0.847 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.352 0.648 43 H 0.345 0.655 44 H 0.073 0.927 45 H 0.044 0.956 46 H -0.002 1.002 47 H 0.004 0.996 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -1.524 -20.811 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.374 5.374 3 C 0.274 3.726 4 O -0.452 6.452 5 C -0.047 4.047 6 N -0.316 5.316 7 C 0.041 3.959 8 C -0.116 4.116 9 C -0.137 4.137 10 C -0.154 4.154 11 C -0.140 4.140 12 C -0.142 4.142 13 C -0.125 4.125 14 C 0.321 3.679 15 O -0.437 6.437 16 C -0.031 4.031 17 H 0.108 0.892 18 N -0.363 5.363 19 C -0.159 4.159 20 C -0.004 4.004 21 C -0.577 4.577 22 H 0.074 0.926 23 C -0.190 4.190 24 N -0.567 5.567 25 Si 0.782 3.218 26 H -0.189 1.189 27 H -0.210 1.210 28 H -0.201 1.201 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.257 0.743 33 H 0.170 0.830 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.158 0.842 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.016 0.984 47 H 0.022 0.978 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.309 0.061 -21.101 21.227 hybrid contribution 1.395 -1.073 1.384 2.239 sum -0.914 -1.012 -19.717 19.764 Atomic orbital electron populations 1.21648 0.78867 1.04190 1.01203 1.45732 1.08408 1.08648 1.74562 1.21544 0.91294 0.84070 0.75677 1.90737 1.70931 1.32949 1.50536 1.21885 0.90160 0.84082 1.08550 1.47447 1.64757 1.14024 1.05408 1.20326 0.92808 0.98207 0.84585 1.20238 0.95396 0.96746 0.99259 1.21220 0.93822 0.99552 0.99075 1.21369 0.96136 0.99020 0.98867 1.21499 1.00677 0.94455 0.97401 1.21498 0.92623 0.99937 1.00167 1.21330 0.97814 0.96363 0.96993 1.20707 0.75501 0.85932 0.85727 1.90584 1.46736 1.18825 1.87550 1.21366 0.99388 0.92474 0.89893 0.89172 1.58701 1.43207 1.25125 1.09294 1.22185 0.95993 0.97598 1.00126 1.18942 0.95875 0.93744 0.91844 1.21580 1.03033 1.22244 1.10880 0.92556 1.25823 0.98473 0.98696 0.96013 1.70077 1.30092 1.39853 1.16639 0.85518 0.79541 0.78698 0.78023 1.18872 1.20963 1.20072 0.94150 0.92615 0.87076 0.74250 0.82995 0.86335 0.87542 0.91291 0.87877 0.85448 0.84048 0.83245 0.83370 0.83271 0.84174 0.90862 0.93676 0.98365 0.97803 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.70 127.77 1.37 2.70 16 2 N -0.72 -12.22 5.71 -484.51 -2.77 -14.99 16 3 C 0.49 11.86 7.38 87.66 0.65 12.51 16 4 O -0.57 -19.46 16.43 -3.04 -0.05 -19.51 16 5 C 0.08 1.70 5.46 85.63 0.47 2.16 16 6 N -0.59 -16.51 1.94 -830.49 -1.61 -18.13 16 7 C 0.16 4.09 5.53 85.64 0.47 4.57 16 8 C -0.12 -2.73 5.46 -19.86 -0.11 -2.84 16 9 C -0.12 -3.19 9.70 22.27 0.22 -2.98 16 10 C -0.14 -3.14 10.05 22.27 0.22 -2.91 16 11 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 12 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 13 C -0.11 -1.90 9.70 22.27 0.22 -1.69 16 14 C 0.53 19.28 6.92 87.66 0.61 19.88 16 15 O -0.56 -23.35 15.38 -3.01 -0.05 -23.40 16 16 C 0.08 3.09 2.37 44.17 0.10 3.19 16 17 H 0.09 3.31 6.77 -2.39 -0.02 3.30 16 18 N -0.83 -31.68 8.94 -171.80 -1.54 -33.21 16 19 C -0.12 -4.67 4.45 30.59 0.14 -4.53 16 20 C 0.03 1.60 4.74 29.85 0.14 1.74 16 21 C -0.54 -28.69 9.11 25.60 0.23 -28.46 16 22 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 23 C 0.01 0.46 5.46 84.65 0.46 0.92 16 24 N -0.93 -53.18 13.29 21.45 0.28 -52.89 16 25 Si 0.96 42.13 29.54 68.60 2.03 44.16 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.42 4.32 8.83 -92.71 -0.82 3.50 16 33 H 0.15 1.87 8.07 -2.38 -0.02 1.85 16 34 H 0.12 2.69 4.83 -2.39 -0.01 2.68 16 35 H 0.11 2.11 8.02 -2.39 -0.02 2.09 16 36 H 0.07 2.08 7.36 -2.39 -0.02 2.06 16 37 H 0.10 3.23 7.61 -2.91 -0.02 3.21 16 38 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.35 13.38 7.55 -89.69 -0.68 12.70 16 43 H 0.34 13.14 8.58 -89.69 -0.77 12.37 16 44 H 0.07 2.60 6.43 -2.39 -0.02 2.58 16 45 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.00 -0.10 6.87 -2.39 -0.02 -0.12 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -76.51 399.58 0.67 -75.85 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -1.27 Total: 41.80 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.63 Total: 0.34 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -5.63 Total: -119.22 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.10 Total: -42.92 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -76.51 0.67 -75.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877289107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.771 kcal (2) G-P(sol) polarization free energy of solvation -76.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds