Wall clock time and date at job start Tue Mar 31 2020 17:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00022 * 2 1 4 4 C 1.38752 * 120.05304 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94480 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05646 * 0.02645 * 5 4 3 7 7 C 1.38246 * 120.10940 * 359.95326 * 6 5 4 8 8 C 1.50700 * 119.97389 * 180.02562 * 7 6 5 9 9 N 1.46892 * 109.47470 * 89.99946 * 8 7 6 10 10 C 1.46954 * 111.00555 * 190.00255 * 9 8 7 11 11 C 1.53050 * 109.36797 * 183.18794 * 10 9 8 12 12 N 1.46955 * 109.36524 * 301.59643 * 11 10 9 13 13 C 1.46899 * 111.00247 * 183.18621 * 12 11 10 14 14 C 1.50698 * 109.46987 * 169.99899 * 13 12 11 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31414 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47234 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47403 * 120.00325 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00122 * 21 19 17 25 25 C 1.46962 * 110.87938 * 59.32182 * 12 11 10 26 26 C 1.46957 * 110.99906 * 313.80446 * 9 8 7 27 27 C 1.38169 * 120.05900 * 0.27846 * 7 6 5 28 28 H 1.08997 * 109.47165 * 300.00143 * 1 2 3 29 29 H 1.08997 * 109.47074 * 60.00576 * 1 2 3 30 30 H 1.09000 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.03043 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97538 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.94971 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46713 * 329.99764 * 8 7 6 35 35 H 1.09007 * 109.47113 * 210.00295 * 8 7 6 36 36 H 1.09000 * 109.48633 * 63.21565 * 10 9 8 37 37 H 1.09004 * 109.48578 * 303.15662 * 10 9 8 38 38 H 1.08996 * 109.48853 * 181.63050 * 11 10 9 39 39 H 1.08999 * 109.50676 * 61.57744 * 11 10 9 40 40 H 1.09003 * 109.46477 * 50.00389 * 13 12 11 41 41 H 1.08993 * 109.47002 * 290.00715 * 13 12 11 42 42 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 43 43 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.49161 * 60.64344 * 25 12 11 45 45 H 1.08995 * 109.49057 * 180.71332 * 25 12 11 46 46 H 1.09005 * 109.48543 * 296.77286 * 26 9 8 47 47 H 1.08996 * 109.49108 * 56.84154 * 26 9 8 48 48 H 1.07993 * 120.03346 * 179.74000 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0007 8 6 5.5607 2.5983 -0.0007 9 7 6.0497 2.6257 1.3842 10 6 7.4841 2.9417 1.4302 11 6 7.9707 2.8824 2.8801 12 7 7.1987 3.8332 3.6924 13 6 7.6876 3.8606 5.0773 14 6 7.0472 5.0091 5.8134 15 8 6.2605 5.7332 5.2407 16 7 7.3479 5.2310 7.1083 17 6 6.7695 6.2793 7.7765 18 1 6.0696 6.9245 7.2663 19 6 7.0838 6.5115 9.1099 20 7 7.9358 5.7266 9.7304 21 14 6.2953 7.9393 10.0203 22 1 5.3789 8.6649 9.1044 23 1 5.5270 7.4224 11.1812 24 1 7.3527 8.8653 10.4994 25 6 5.7642 3.5172 3.6465 26 6 5.2777 3.5764 2.1965 27 6 3.4311 1.2848 -0.0050 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3203 -0.0005 32 1 1.3339 4.5114 -0.0019 33 1 3.7921 4.6381 -0.0025 34 1 5.8756 3.5061 -0.5153 35 1 5.9714 1.7287 -0.5139 36 1 7.6489 3.9428 1.0319 37 1 8.0355 2.2165 0.8316 38 1 9.0279 3.1447 2.9199 39 1 7.8313 1.8741 3.2698 40 1 8.7703 3.9872 5.0779 41 1 7.4311 2.9238 5.5718 42 1 7.9767 4.6517 7.5664 43 1 8.1550 5.8885 10.6613 44 1 5.5994 2.5161 4.0446 45 1 5.2128 4.2423 4.2450 46 1 5.4175 4.5848 1.8070 47 1 4.2205 3.3141 2.1567 48 1 4.0206 0.3800 -0.0085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879449591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:05 Heat of formation + Delta-G solvation = -25.047595 kcal Electronic energy + Delta-G solvation = -28384.793379 eV Core-core repulsion = 24440.398073 eV Total energy + Delta-G solvation = -3944.395306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.48027 -39.37060 -38.22184 -37.35240 -35.10258 -33.79627 -31.80428 -31.20733 -30.85753 -30.34408 -28.62173 -27.56113 -26.07573 -24.44608 -23.52927 -23.05459 -22.53846 -21.03372 -19.57454 -19.14085 -17.96561 -17.81934 -16.49129 -16.27158 -16.16170 -15.96729 -15.80656 -15.13329 -14.83034 -14.67836 -14.58447 -14.31720 -14.06020 -13.85735 -13.67339 -13.46273 -13.33156 -13.12084 -12.75914 -12.30107 -12.22900 -12.02685 -11.83474 -11.59055 -11.47527 -11.37710 -11.28254 -11.09297 -11.00952 -10.95124 -10.58882 -10.50432 -10.32181 -10.19593 -9.45492 -9.06994 -8.45274 -8.38610 -8.22139 -7.94230 -7.76999 -6.39002 -3.79531 1.09864 1.28057 3.01521 3.17924 3.28224 3.35440 3.48925 3.94093 4.04894 4.09584 4.29080 4.51513 4.58668 4.81175 4.84547 4.86289 4.96785 5.02928 5.11319 5.14568 5.17410 5.27060 5.28635 5.32059 5.37838 5.49236 5.56520 5.60215 5.67426 5.77423 5.83915 5.86887 5.96800 5.98521 6.06745 6.10214 6.25885 6.28468 6.34120 6.42148 6.49459 6.54963 6.99073 7.06169 7.17714 7.38362 7.49457 7.58089 8.09991 8.65286 9.21278 9.58150 10.10129 10.78946 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.002347 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.341463 B =11928.638761 C =12982.221556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.042 4.042 8 C 0.094 3.906 9 N -0.535 5.535 10 C 0.060 3.940 11 C 0.056 3.944 12 N -0.517 5.517 13 C 0.046 3.954 14 C 0.445 3.555 15 O -0.578 6.578 16 N -0.566 5.566 17 C -0.296 4.296 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.056 3.944 26 C 0.059 3.941 27 C -0.131 4.131 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.270 0.730 44 H 0.029 0.971 45 H 0.106 0.894 46 H 0.043 0.957 47 H 0.080 0.920 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.246 -11.178 -20.536 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.098 4.098 6 C -0.166 4.166 7 C -0.042 4.042 8 C -0.034 4.034 9 N -0.260 5.260 10 C -0.068 4.068 11 C -0.072 4.072 12 N -0.242 5.242 13 C -0.085 4.085 14 C 0.231 3.769 15 O -0.462 6.462 16 N -0.203 5.203 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.072 4.072 26 C -0.068 4.068 27 C -0.150 4.150 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.124 0.876 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.618 -10.869 -20.719 24.934 hybrid contribution -0.190 0.453 0.935 1.056 sum -8.808 -10.416 -19.784 24.031 Atomic orbital electron populations 1.23040 0.78483 1.03860 1.01333 1.86069 1.21302 1.27029 1.88820 1.19007 0.92316 0.84100 0.96756 1.21222 0.99930 0.92462 1.09212 1.20907 0.94502 0.97033 0.97377 1.21049 0.93874 0.98134 1.03539 1.19536 0.95196 0.92295 0.97212 1.21068 0.90251 1.01586 0.90454 1.62355 1.03363 1.51048 1.09228 1.22138 0.88039 0.99790 0.96810 1.22156 0.97761 0.94498 0.92810 1.61768 1.03442 1.49082 1.09938 1.21832 1.00281 0.97647 0.88726 1.19763 0.86482 0.87852 0.82833 1.90476 1.38315 1.50065 1.67334 1.41885 1.40894 1.28562 1.08913 1.19738 1.23156 1.06414 0.93288 0.87904 1.25258 0.97053 0.98890 0.96859 1.69623 1.34043 1.38556 1.12173 0.85811 0.78836 0.80582 0.79175 1.19248 1.20807 1.20780 1.22331 0.88834 0.99918 0.96125 1.22271 0.97621 0.93792 0.93148 1.20247 0.91066 0.98238 1.05451 0.92595 0.92762 0.88310 0.85660 0.85699 0.85882 0.93602 0.89804 0.93819 0.90523 0.90418 0.94330 0.89408 0.93454 0.77500 0.91974 0.95241 0.87622 0.93855 0.90158 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.43 -0.20 -3.56 16 3 C 0.12 1.37 6.69 -39.21 -0.26 1.11 16 4 C -0.21 -2.07 9.04 -39.43 -0.36 -2.43 16 5 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 6 C -0.15 -1.58 7.84 -39.56 -0.31 -1.89 16 7 C -0.04 -0.46 4.14 -104.64 -0.43 -0.90 16 8 C 0.09 0.99 5.44 -4.98 -0.03 0.96 16 9 N -0.53 -6.83 4.85 -235.91 -1.14 -7.97 16 10 C 0.06 0.73 5.58 -3.77 -0.02 0.71 16 11 C 0.06 0.77 5.61 -3.77 -0.02 0.75 16 12 N -0.52 -9.03 4.45 -235.91 -1.05 -10.08 16 13 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 14 C 0.45 10.65 7.48 -10.99 -0.08 10.57 16 15 O -0.58 -15.64 13.92 5.55 0.08 -15.56 16 16 N -0.57 -14.51 5.29 -10.96 -0.06 -14.56 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 20 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 21 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.06 0.98 5.26 -3.76 -0.02 0.96 16 26 C 0.06 0.88 4.64 -3.76 -0.02 0.86 16 27 C -0.13 -1.48 9.64 -39.43 -0.38 -1.86 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.05 0.46 8.02 -51.93 -0.42 0.05 16 35 H 0.08 0.77 8.08 -51.92 -0.42 0.35 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 42 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.11 2.20 5.85 -51.93 -0.30 1.90 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.18 5.85 -51.93 -0.30 0.88 16 48 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -32.24 384.78 -9.95 -42.19 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.47 Total: 9.97 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.60 Total: 1.64 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -1.53 Total: -56.66 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.13 Total: -19.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.24 -9.95 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879449591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds