Wall clock time and date at job start Tue Mar 31 2020 17:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00022 * 2 1 4 4 C 1.38752 * 120.05304 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94480 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05646 * 0.02645 * 5 4 3 7 7 C 1.38246 * 120.10940 * 359.95326 * 6 5 4 8 8 C 1.50700 * 119.97389 * 180.02562 * 7 6 5 9 9 N 1.46892 * 109.47470 * 89.99946 * 8 7 6 10 10 C 1.46954 * 111.00555 * 190.00255 * 9 8 7 11 11 C 1.53050 * 109.36797 * 183.18794 * 10 9 8 12 12 N 1.46955 * 109.36524 * 301.59643 * 11 10 9 13 13 C 1.46899 * 111.00247 * 183.18621 * 12 11 10 14 14 C 1.50698 * 109.46987 * 169.99899 * 13 12 11 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31414 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47234 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47403 * 120.00325 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00122 * 21 19 17 25 25 C 1.46962 * 110.87938 * 59.32182 * 12 11 10 26 26 C 1.46957 * 110.99906 * 313.80446 * 9 8 7 27 27 C 1.38169 * 120.05900 * 0.27846 * 7 6 5 28 28 H 1.08997 * 109.47165 * 300.00143 * 1 2 3 29 29 H 1.08997 * 109.47074 * 60.00576 * 1 2 3 30 30 H 1.09000 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.03043 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97538 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.94971 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46713 * 329.99764 * 8 7 6 35 35 H 1.09007 * 109.47113 * 210.00295 * 8 7 6 36 36 H 1.09000 * 109.48633 * 63.21565 * 10 9 8 37 37 H 1.09004 * 109.48578 * 303.15662 * 10 9 8 38 38 H 1.08996 * 109.48853 * 181.63050 * 11 10 9 39 39 H 1.08999 * 109.50676 * 61.57744 * 11 10 9 40 40 H 1.09003 * 109.46477 * 50.00389 * 13 12 11 41 41 H 1.08993 * 109.47002 * 290.00715 * 13 12 11 42 42 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 43 43 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.49161 * 60.64344 * 25 12 11 45 45 H 1.08995 * 109.49057 * 180.71332 * 25 12 11 46 46 H 1.09005 * 109.48543 * 296.77286 * 26 9 8 47 47 H 1.08996 * 109.49108 * 56.84154 * 26 9 8 48 48 H 1.07993 * 120.03346 * 179.74000 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0007 8 6 5.5607 2.5983 -0.0007 9 7 6.0497 2.6257 1.3842 10 6 7.4841 2.9417 1.4302 11 6 7.9707 2.8824 2.8801 12 7 7.1987 3.8332 3.6924 13 6 7.6876 3.8606 5.0773 14 6 7.0472 5.0091 5.8134 15 8 6.2605 5.7332 5.2407 16 7 7.3479 5.2310 7.1083 17 6 6.7695 6.2793 7.7765 18 1 6.0696 6.9245 7.2663 19 6 7.0838 6.5115 9.1099 20 7 7.9358 5.7266 9.7304 21 14 6.2953 7.9393 10.0203 22 1 5.3789 8.6649 9.1044 23 1 5.5270 7.4224 11.1812 24 1 7.3527 8.8653 10.4994 25 6 5.7642 3.5172 3.6465 26 6 5.2777 3.5764 2.1965 27 6 3.4311 1.2848 -0.0050 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3203 -0.0005 32 1 1.3339 4.5114 -0.0019 33 1 3.7921 4.6381 -0.0025 34 1 5.8756 3.5061 -0.5153 35 1 5.9714 1.7287 -0.5139 36 1 7.6489 3.9428 1.0319 37 1 8.0355 2.2165 0.8316 38 1 9.0279 3.1447 2.9199 39 1 7.8313 1.8741 3.2698 40 1 8.7703 3.9872 5.0779 41 1 7.4311 2.9238 5.5718 42 1 7.9767 4.6517 7.5664 43 1 8.1550 5.8885 10.6613 44 1 5.5994 2.5161 4.0446 45 1 5.2128 4.2423 4.2450 46 1 5.4175 4.5848 1.8070 47 1 4.2205 3.3141 2.1567 48 1 4.0206 0.3800 -0.0085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879449591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:04 Heat of formation + Delta-G solvation = -48.419338 kcal Electronic energy + Delta-G solvation = -28385.806854 eV Core-core repulsion = 24440.398073 eV Total energy + Delta-G solvation = -3945.408781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30140 -40.65254 -39.66286 -38.41607 -36.38738 -35.72764 -33.29218 -32.68103 -31.90378 -31.27968 -29.86536 -28.23104 -27.46677 -26.02200 -24.65053 -24.29690 -23.39377 -21.84341 -21.08036 -20.68090 -19.86903 -18.71517 -17.79316 -17.26810 -17.19569 -16.95732 -16.64125 -16.58093 -16.34292 -15.98986 -15.87390 -15.63432 -15.31341 -15.14370 -14.92812 -14.79665 -14.46369 -14.03260 -13.87223 -13.55407 -13.41418 -13.19826 -12.96116 -12.94959 -12.80793 -12.51124 -12.46735 -12.40543 -12.20599 -12.11561 -12.04455 -11.84097 -11.81957 -11.55799 -11.43608 -10.26806 -9.99398 -9.88173 -9.36744 -9.19076 -9.10278 -8.46009 -5.94441 0.30130 0.47456 1.36381 1.41307 1.55626 2.05896 2.28607 2.36460 2.64944 2.77715 3.13452 3.20765 3.39367 3.71019 3.87394 3.91771 4.11856 4.15259 4.18260 4.22495 4.31606 4.34285 4.37498 4.38671 4.45458 4.49573 4.50139 4.53197 4.58643 4.66340 4.71611 4.73207 4.83901 4.89090 4.95176 5.05340 5.08616 5.12100 5.32356 5.41615 5.46939 5.60695 5.77176 5.84505 5.96896 6.02754 6.16604 6.25137 6.45578 6.61635 7.13864 7.57337 8.13296 8.71767 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.002347 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.341463 B =11928.638761 C =12982.221556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.212 4.212 5 C -0.086 4.086 6 C -0.160 4.160 7 C -0.050 4.050 8 C 0.096 3.904 9 N -0.538 5.538 10 C 0.062 3.938 11 C 0.055 3.945 12 N -0.534 5.534 13 C 0.058 3.942 14 C 0.442 3.558 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.061 3.939 26 C 0.075 3.925 27 C -0.145 4.145 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.028 0.972 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.078 0.922 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.083 -12.016 -21.317 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.230 4.230 5 C -0.104 4.104 6 C -0.179 4.179 7 C -0.050 4.050 8 C -0.030 4.030 9 N -0.263 5.263 10 C -0.066 4.066 11 C -0.072 4.072 12 N -0.260 5.260 13 C -0.073 4.073 14 C 0.229 3.771 15 O -0.500 6.500 16 N -0.213 5.213 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.067 4.067 26 C -0.053 4.053 27 C -0.164 4.164 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.055 0.945 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.097 0.903 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.438 -11.737 -21.513 25.919 hybrid contribution -0.291 0.661 1.120 1.332 sum -8.729 -11.077 -20.393 24.794 Atomic orbital electron populations 1.23318 0.76571 1.05494 1.02139 1.86042 1.23376 1.26923 1.88772 1.19199 0.92561 0.84761 0.96833 1.21482 1.01069 0.92013 1.08464 1.21189 0.94470 0.97936 0.96784 1.21186 0.94485 0.98176 1.04005 1.19617 0.95549 0.92325 0.97512 1.21126 0.90041 1.02700 0.89154 1.62354 1.03660 1.49896 1.10364 1.22216 0.87757 1.00483 0.96145 1.22305 0.98227 0.93746 0.92921 1.61751 1.03599 1.51099 1.09525 1.21717 1.00994 0.95510 0.89064 1.20764 0.85473 0.88497 0.82324 1.90456 1.39746 1.51751 1.68015 1.41951 1.41263 1.28427 1.09652 1.19674 1.24249 1.07674 0.94297 0.90393 1.26042 0.97234 1.01167 0.96986 1.69682 1.34363 1.39512 1.12697 0.84875 0.78110 0.77554 0.77816 1.19827 1.19621 1.19565 1.22142 0.88974 0.98324 0.97296 1.21998 0.97802 0.93603 0.91883 1.20380 0.91558 0.98400 1.06040 0.92168 0.91500 0.86404 0.83582 0.83922 0.85870 0.93010 0.87914 0.94491 0.87292 0.88516 0.93763 0.86919 0.91911 0.77053 0.91343 0.95339 0.91725 0.95333 0.90334 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.81 10.50 -92.44 -0.97 -7.78 16 3 C 0.11 2.40 6.69 22.51 0.15 2.56 16 4 C -0.21 -3.97 9.04 22.37 0.20 -3.77 16 5 C -0.09 -1.65 10.04 22.25 0.22 -1.42 16 6 C -0.16 -3.39 7.84 22.28 0.17 -3.21 16 7 C -0.05 -1.06 4.14 -19.88 -0.08 -1.15 16 8 C 0.10 1.88 5.44 85.56 0.47 2.35 16 9 N -0.54 -12.95 4.85 -900.29 -4.37 -17.32 16 10 C 0.06 1.34 5.58 86.31 0.48 1.82 16 11 C 0.06 1.39 5.61 86.31 0.48 1.87 16 12 N -0.53 -18.31 4.45 -900.29 -4.00 -22.31 16 13 C 0.06 2.12 5.45 85.56 0.47 2.58 16 14 C 0.44 21.63 7.48 87.66 0.66 22.29 16 15 O -0.61 -34.55 13.92 -3.07 -0.04 -34.59 16 16 N -0.58 -30.17 5.29 -306.98 -1.62 -31.80 16 17 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 20 N -0.92 -50.37 13.05 21.66 0.28 -50.08 16 21 Si 0.99 43.53 29.55 68.60 2.03 45.55 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C 0.06 2.17 5.26 86.31 0.45 2.63 16 26 C 0.08 2.25 4.64 86.31 0.40 2.65 16 27 C -0.14 -3.19 9.64 22.37 0.22 -2.98 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.15 2.00 6.30 -2.91 -0.02 1.98 16 32 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.12 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.05 0.96 8.02 -2.39 -0.02 0.94 16 35 H 0.10 1.63 8.08 -2.38 -0.02 1.61 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 2.06 8.07 -2.39 -0.02 2.04 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 3.54 8.03 -2.39 -0.02 3.52 16 41 H 0.06 2.10 8.12 -2.39 -0.02 2.09 16 42 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 2.84 5.85 -2.39 -0.01 2.82 16 46 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.08 2.35 5.85 -2.39 -0.01 2.33 16 48 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -70.91 384.78 -1.78 -72.69 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.23 Total: 36.62 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.68 Total: 9.03 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -9.71 Total: -121.52 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.01 Total: -42.38 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -70.91 -1.78 -72.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879449591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.268 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds