Wall clock time and date at job start Tue Mar 31 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00126 * 2 1 4 4 C 1.38756 * 120.05589 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94460 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05719 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.10772 * 359.95975 * 6 5 4 8 8 C 1.50700 * 119.96807 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.48663 * 159.95562 * 8 7 6 10 10 C 1.53047 * 109.48961 * 279.99885 * 8 7 6 11 11 N 1.46960 * 109.36648 * 178.38789 * 10 8 7 12 12 C 1.46896 * 111.00373 * 176.81138 * 11 10 8 13 13 C 1.50698 * 109.47207 * 293.63706 * 12 11 10 14 14 O 1.21277 * 120.00337 * 353.71530 * 13 12 11 15 15 N 1.34775 * 120.00226 * 173.71953 * 13 12 11 16 16 C 1.46500 * 120.00292 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47110 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00386 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00259 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99484 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00428 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47092 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46762 * 119.99821 * 21 19 17 24 24 H 1.48493 * 109.47460 * 240.00161 * 21 19 17 25 25 C 1.46952 * 110.88075 * 300.68664 * 11 10 8 26 26 C 1.53047 * 109.36904 * 59.31488 * 25 11 10 27 27 N 1.46952 * 109.36463 * 301.59730 * 26 25 11 28 28 C 1.38164 * 120.05596 * 0.29483 * 7 6 5 29 29 H 1.09003 * 109.46703 * 59.99995 * 1 2 3 30 30 H 1.08993 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47222 * 300.00028 * 1 2 3 32 32 H 1.08002 * 120.02531 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.96909 * 179.97438 * 5 4 3 34 34 H 1.07991 * 119.94786 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.48750 * 58.42355 * 10 8 7 36 36 H 1.08993 * 109.50760 * 298.37238 * 10 8 7 37 37 H 1.08994 * 109.47567 * 173.63173 * 12 11 10 38 38 H 1.09004 * 109.47000 * 53.63110 * 12 11 10 39 39 H 0.97003 * 119.99961 * 359.97438 * 15 13 12 40 40 H 1.08995 * 109.47054 * 300.00265 * 16 15 13 41 41 H 1.09004 * 109.46943 * 60.00463 * 16 15 13 42 42 H 0.97006 * 120.00197 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.48819 * 179.28752 * 25 11 10 44 44 H 1.09005 * 109.49037 * 299.34760 * 25 11 10 45 45 H 1.08999 * 109.49105 * 181.63337 * 26 25 11 46 46 H 1.09002 * 109.48750 * 61.56769 * 26 25 11 47 47 H 1.00894 * 111.00769 * 295.45587 * 27 26 25 48 48 H 1.08007 * 120.02252 * 179.72781 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0005 7 6 4.0560 2.5171 0.0003 8 6 5.5609 2.5981 0.0003 9 1 5.9759 1.6537 0.3523 10 6 6.0572 2.8760 -1.4205 11 7 7.5222 2.9929 -1.4108 12 6 8.0440 3.1850 -2.7704 13 6 7.7958 1.9412 -3.5842 14 8 7.3435 0.9492 -3.0530 15 7 8.0765 1.9311 -4.9024 16 6 7.8357 0.7218 -5.6934 17 6 8.2303 0.9718 -7.1261 18 1 8.6217 1.9350 -7.4182 19 6 8.0916 -0.0291 -8.0642 20 7 7.6145 -1.2019 -7.7086 21 14 8.5801 0.2811 -9.8403 22 1 9.0840 1.6709 -9.9796 23 1 9.6472 -0.6737 -10.2341 24 1 7.3980 0.0923 -10.7190 25 6 7.9550 4.0802 -0.5220 26 6 7.4586 3.8023 0.8989 27 7 5.9937 3.6855 0.8891 28 6 3.4311 1.2848 -0.0055 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 0.0005 33 1 1.3340 4.5114 0.0011 34 1 3.7923 4.6380 0.0005 35 1 5.6206 3.8068 -1.7827 36 1 5.7621 2.0567 -2.0759 37 1 9.1152 3.3812 -2.7242 38 1 7.5395 4.0312 -3.2371 39 1 8.4380 2.7246 -5.3274 40 1 8.4292 -0.0994 -5.2915 41 1 6.7780 0.4622 -5.6475 42 1 7.5166 -1.9061 -8.3686 43 1 9.0434 4.1385 -0.5221 44 1 7.5399 5.0247 -0.8739 45 1 7.7536 4.6219 1.5540 46 1 7.8952 2.8715 1.2611 47 1 5.5630 4.5596 0.6274 48 1 4.0207 0.3799 -0.0102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879526516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:11 Heat of formation + Delta-G solvation = -34.272105 kcal Electronic energy + Delta-G solvation = -28431.641812 eV Core-core repulsion = 24486.846501 eV Total energy + Delta-G solvation = -3944.795311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50723 -39.64730 -38.45004 -37.28673 -34.49466 -34.01284 -32.38559 -32.31527 -30.72642 -29.03234 -28.67439 -27.47838 -26.69136 -24.26381 -23.89165 -22.71169 -22.30582 -21.19602 -20.31971 -19.64003 -18.08229 -17.11035 -16.43373 -16.21436 -16.08131 -15.88756 -15.68242 -15.47703 -15.13823 -14.81414 -14.78227 -14.42190 -14.20332 -13.85367 -13.71429 -13.57880 -13.05657 -12.93756 -12.73612 -12.43153 -12.34825 -12.11824 -11.92875 -11.80614 -11.55540 -11.49636 -11.42827 -11.15865 -10.97931 -10.94983 -10.83215 -10.77330 -10.31689 -9.37910 -9.16213 -8.99691 -8.73840 -8.51608 -8.28714 -8.24598 -7.85315 -6.16662 -4.23579 1.19379 1.36183 3.11058 3.22945 3.29828 3.32791 3.38732 3.50642 3.68714 4.09503 4.22196 4.39601 4.64256 4.71043 4.87205 4.90648 4.94092 4.95672 4.97773 5.04132 5.09009 5.18186 5.19410 5.23697 5.26850 5.34700 5.43573 5.47797 5.49209 5.56044 5.61610 5.85117 5.86864 5.96081 6.03681 6.18466 6.30257 6.42576 6.65608 6.79494 6.85176 7.05364 7.19706 7.28312 7.32962 7.45671 7.52845 7.67732 7.97374 8.64015 8.79460 9.13031 9.43226 10.93536 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.002812 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.738713 B = 9953.191448 C =12109.648503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.029 4.029 8 C 0.133 3.867 9 H 0.104 0.896 10 C 0.027 3.973 11 N -0.514 5.514 12 C 0.036 3.964 13 C 0.497 3.503 14 O -0.536 6.536 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.884 5.884 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.015 3.985 26 C 0.061 3.939 27 N -0.678 5.678 28 C -0.136 4.136 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.028 0.972 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.389 0.611 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.031 0.969 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.335 0.665 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 12.933 18.099 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.165 4.165 7 C -0.030 4.030 8 C 0.023 3.977 9 H 0.122 0.878 10 C -0.102 4.102 11 N -0.238 5.238 12 C -0.095 4.095 13 C 0.281 3.719 14 O -0.413 6.413 15 N -0.365 5.365 16 C 0.131 3.869 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.115 4.115 26 C -0.068 4.068 27 N -0.308 5.308 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.046 0.954 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.221 0.779 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.154 0.846 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.571 10.980 19.160 24.068 hybrid contribution 0.014 1.811 -2.594 3.164 sum -9.557 12.791 16.566 23.008 Atomic orbital electron populations 1.23043 0.78525 1.03936 1.01188 1.86102 1.21256 1.26911 1.88659 1.18964 0.92215 0.84164 0.96268 1.21196 0.99861 0.92454 1.09564 1.20844 0.94424 0.96886 0.97728 1.20752 0.93633 0.97749 1.04317 1.19429 0.94490 0.92400 0.96687 1.20487 0.89866 0.96891 0.90449 0.87828 1.22913 0.86963 1.01775 0.98551 1.61690 1.10454 1.43538 1.08139 1.22035 1.01787 0.96454 0.89244 1.20268 0.79461 0.89318 0.82876 1.90650 1.44680 1.35080 1.70897 1.46466 1.64073 1.17950 1.07995 1.19081 0.97087 0.81703 0.89055 1.21259 1.44681 0.99255 0.92928 0.91916 1.24958 0.94860 0.94830 0.99405 1.69987 1.44179 1.03348 1.34674 0.86368 0.78264 0.78326 0.83990 1.19671 1.20775 1.20798 1.22921 1.01573 0.91899 0.95114 1.22102 0.87440 1.03151 0.94139 1.60869 1.07339 1.08443 1.54100 1.20306 0.91396 0.98416 1.05433 0.92663 0.88250 0.92795 0.85683 0.85924 0.86386 0.95363 0.87890 0.88165 0.92731 0.77897 0.95534 0.95634 0.92497 0.89960 0.95123 0.90035 0.89623 0.84620 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.92 10.50 -19.43 -0.20 -4.13 16 3 C 0.13 1.65 6.69 -39.22 -0.26 1.38 16 4 C -0.21 -2.26 9.04 -39.43 -0.36 -2.62 16 5 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 6 C -0.15 -1.58 9.27 -39.56 -0.37 -1.94 16 7 C -0.03 -0.36 4.96 -104.64 -0.52 -0.88 16 8 C 0.13 1.68 2.83 -68.81 -0.19 1.49 16 9 H 0.10 1.48 8.01 -51.93 -0.42 1.07 16 10 C 0.03 0.39 4.52 -3.77 -0.02 0.37 16 11 N -0.51 -7.20 4.40 -235.92 -1.04 -8.24 16 12 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 13 C 0.50 9.91 7.39 -10.99 -0.08 9.83 16 14 O -0.54 -12.86 14.68 5.56 0.08 -12.78 16 15 N -0.72 -15.06 5.55 -61.48 -0.34 -15.40 16 16 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 17 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.01 0.15 5.60 -3.77 -0.02 0.13 16 26 C 0.06 0.58 6.72 -3.77 -0.03 0.56 16 27 N -0.68 -7.08 6.44 -107.81 -0.69 -7.78 16 28 C -0.14 -1.85 9.61 -39.43 -0.38 -2.23 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.12 1.05 6.58 -52.49 -0.35 0.71 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 1.87 6.09 -51.93 -0.32 1.55 16 37 H 0.10 1.24 8.02 -51.93 -0.42 0.82 16 38 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.34 3.07 6.99 -39.29 -0.27 2.79 16 48 H 0.13 1.85 8.04 -52.48 -0.42 1.43 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -33.62 388.62 -10.14 -43.76 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.41 Total: 8.48 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.10 Total: -0.19 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -1.34 Total: -56.90 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.12 Total: -16.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.62 -10.14 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879526516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.488 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds