Wall clock time and date at job start Tue Mar 31 2020 17:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00126 * 2 1 4 4 C 1.38756 * 120.05589 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94460 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05719 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.10772 * 359.95975 * 6 5 4 8 8 C 1.50700 * 119.96807 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.48663 * 159.95562 * 8 7 6 10 10 C 1.53047 * 109.48961 * 279.99885 * 8 7 6 11 11 N 1.46960 * 109.36648 * 178.38789 * 10 8 7 12 12 C 1.46896 * 111.00373 * 176.81138 * 11 10 8 13 13 C 1.50698 * 109.47207 * 293.63706 * 12 11 10 14 14 O 1.21277 * 120.00337 * 353.71530 * 13 12 11 15 15 N 1.34775 * 120.00226 * 173.71953 * 13 12 11 16 16 C 1.46500 * 120.00292 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47110 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00386 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00259 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99484 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00428 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47092 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46762 * 119.99821 * 21 19 17 24 24 H 1.48493 * 109.47460 * 240.00161 * 21 19 17 25 25 C 1.46952 * 110.88075 * 300.68664 * 11 10 8 26 26 C 1.53047 * 109.36904 * 59.31488 * 25 11 10 27 27 N 1.46952 * 109.36463 * 301.59730 * 26 25 11 28 28 C 1.38164 * 120.05596 * 0.29483 * 7 6 5 29 29 H 1.09003 * 109.46703 * 59.99995 * 1 2 3 30 30 H 1.08993 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47222 * 300.00028 * 1 2 3 32 32 H 1.08002 * 120.02531 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.96909 * 179.97438 * 5 4 3 34 34 H 1.07991 * 119.94786 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.48750 * 58.42355 * 10 8 7 36 36 H 1.08993 * 109.50760 * 298.37238 * 10 8 7 37 37 H 1.08994 * 109.47567 * 173.63173 * 12 11 10 38 38 H 1.09004 * 109.47000 * 53.63110 * 12 11 10 39 39 H 0.97003 * 119.99961 * 359.97438 * 15 13 12 40 40 H 1.08995 * 109.47054 * 300.00265 * 16 15 13 41 41 H 1.09004 * 109.46943 * 60.00463 * 16 15 13 42 42 H 0.97006 * 120.00197 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.48819 * 179.28752 * 25 11 10 44 44 H 1.09005 * 109.49037 * 299.34760 * 25 11 10 45 45 H 1.08999 * 109.49105 * 181.63337 * 26 25 11 46 46 H 1.09002 * 109.48750 * 61.56769 * 26 25 11 47 47 H 1.00894 * 111.00769 * 295.45587 * 27 26 25 48 48 H 1.08007 * 120.02252 * 179.72781 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0005 7 6 4.0560 2.5171 0.0003 8 6 5.5609 2.5981 0.0003 9 1 5.9759 1.6537 0.3523 10 6 6.0572 2.8760 -1.4205 11 7 7.5222 2.9929 -1.4108 12 6 8.0440 3.1850 -2.7704 13 6 7.7958 1.9412 -3.5842 14 8 7.3435 0.9492 -3.0530 15 7 8.0765 1.9311 -4.9024 16 6 7.8357 0.7218 -5.6934 17 6 8.2303 0.9718 -7.1261 18 1 8.6217 1.9350 -7.4182 19 6 8.0916 -0.0291 -8.0642 20 7 7.6145 -1.2019 -7.7086 21 14 8.5801 0.2811 -9.8403 22 1 9.0840 1.6709 -9.9796 23 1 9.6472 -0.6737 -10.2341 24 1 7.3980 0.0923 -10.7190 25 6 7.9550 4.0802 -0.5220 26 6 7.4586 3.8023 0.8989 27 7 5.9937 3.6855 0.8891 28 6 3.4311 1.2848 -0.0055 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 0.0005 33 1 1.3340 4.5114 0.0011 34 1 3.7923 4.6380 0.0005 35 1 5.6206 3.8068 -1.7827 36 1 5.7621 2.0567 -2.0759 37 1 9.1152 3.3812 -2.7242 38 1 7.5395 4.0312 -3.2371 39 1 8.4380 2.7246 -5.3274 40 1 8.4292 -0.0994 -5.2915 41 1 6.7780 0.4622 -5.6475 42 1 7.5166 -1.9061 -8.3686 43 1 9.0434 4.1385 -0.5221 44 1 7.5399 5.0247 -0.8739 45 1 7.7536 4.6219 1.5540 46 1 7.8952 2.8715 1.2611 47 1 5.5630 4.5596 0.6274 48 1 4.0207 0.3799 -0.0102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879526516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:10 Heat of formation + Delta-G solvation = -61.138488 kcal Electronic energy + Delta-G solvation = -28432.806826 eV Core-core repulsion = 24486.846501 eV Total energy + Delta-G solvation = -3945.960325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46022 -40.81630 -39.80024 -38.22922 -36.17732 -35.34622 -34.35110 -33.27156 -31.58972 -30.27950 -29.91203 -28.41373 -28.12837 -25.52476 -24.86656 -24.16239 -23.54427 -22.13038 -21.35699 -21.25183 -19.02755 -18.87106 -17.58670 -17.31812 -17.25867 -17.01746 -16.77097 -16.65357 -16.60649 -16.10878 -15.77530 -15.70169 -15.57973 -15.14522 -14.64471 -14.53051 -14.32572 -14.20317 -13.98175 -13.93166 -13.53757 -13.47285 -13.05448 -12.88921 -12.88679 -12.75204 -12.62590 -12.44046 -12.27192 -12.21726 -11.94702 -11.88926 -11.67156 -11.47415 -10.83060 -10.74411 -9.92622 -9.84083 -9.51678 -9.22833 -9.16356 -8.30789 -6.47851 0.29921 0.47133 1.41515 1.43045 1.56457 1.78075 2.23575 2.33287 2.42939 2.71287 2.97829 3.04014 3.24773 3.80085 3.84142 3.88538 3.96484 4.06125 4.07823 4.15852 4.22525 4.27253 4.30975 4.36859 4.37420 4.37878 4.51058 4.56916 4.62925 4.69744 4.75551 4.86337 4.92541 5.00909 5.09223 5.15333 5.21895 5.31057 5.45167 5.47533 5.54862 5.66709 5.80033 5.81755 5.84130 5.90460 6.09713 6.44860 6.45448 6.63822 6.93488 7.22064 7.52295 8.81725 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.002812 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.738713 B = 9953.191448 C =12109.648503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.147 4.147 7 C -0.040 4.040 8 C 0.145 3.855 9 H 0.072 0.928 10 C 0.037 3.963 11 N -0.539 5.539 12 C 0.051 3.949 13 C 0.491 3.509 14 O -0.584 6.584 15 N -0.710 5.710 16 C 0.269 3.731 17 C -0.555 4.555 18 H 0.085 0.915 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.251 1.251 23 H -0.279 1.279 24 H -0.279 1.279 25 C 0.018 3.982 26 C 0.062 3.938 27 N -0.673 5.673 28 C -0.171 4.171 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.408 0.592 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.268 0.732 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.115 0.885 46 H 0.067 0.933 47 H 0.348 0.652 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 17.275 17.932 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.068 3.932 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.165 4.165 7 C -0.042 4.042 8 C 0.034 3.966 9 H 0.090 0.910 10 C -0.093 4.093 11 N -0.264 5.264 12 C -0.080 4.080 13 C 0.278 3.722 14 O -0.465 6.465 15 N -0.361 5.361 16 C 0.146 3.854 17 C -0.592 4.592 18 H 0.103 0.897 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.175 1.175 23 H -0.204 1.204 24 H -0.205 1.205 25 C -0.111 4.111 26 C -0.067 4.067 27 N -0.304 5.304 28 C -0.191 4.191 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.243 0.757 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.168 0.832 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.529 15.390 19.020 26.256 hybrid contribution -0.054 0.407 -2.442 2.476 sum -9.583 15.796 16.578 24.823 Atomic orbital electron populations 1.23341 0.76302 1.05462 1.02404 1.86061 1.23716 1.27339 1.88787 1.19151 0.92064 0.85207 0.96825 1.21532 1.01143 0.91858 1.08468 1.21299 0.94370 0.97883 0.95825 1.21041 0.94206 0.97794 1.03492 1.19495 0.94503 0.92772 0.97386 1.20185 0.90067 0.96485 0.89815 0.91011 1.22703 0.87704 1.00339 0.98514 1.61623 1.10090 1.46226 1.08457 1.21962 1.03970 0.93292 0.88745 1.21417 0.77549 0.90798 0.82468 1.90641 1.46417 1.37663 1.71734 1.46194 1.64592 1.16880 1.08472 1.18479 0.93629 0.82975 0.90275 1.21647 1.44491 1.00258 0.92845 0.89710 1.26110 0.94446 0.94307 1.04925 1.70158 1.45514 1.04705 1.36676 0.85089 0.77823 0.79140 0.77021 1.17478 1.20433 1.20457 1.23024 1.02673 0.91182 0.94202 1.22192 0.86518 1.03570 0.94464 1.60823 1.08243 1.08282 1.53055 1.20365 0.92374 0.98356 1.07966 0.91810 0.86771 0.91036 0.83059 0.82359 0.83931 0.93975 0.92857 0.85064 0.89898 0.75658 0.99769 0.99942 0.92270 0.88278 0.93056 0.86735 0.91420 0.83223 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.34 -9.10 10.50 -92.42 -0.97 -10.07 16 3 C 0.11 3.02 6.69 22.51 0.15 3.17 16 4 C -0.21 -4.26 9.04 22.37 0.20 -4.06 16 5 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 6 C -0.15 -2.95 9.27 22.28 0.21 -2.74 16 7 C -0.04 -1.06 4.96 -19.88 -0.10 -1.16 16 8 C 0.15 3.83 2.83 44.17 0.12 3.96 16 9 H 0.07 2.31 8.01 -2.39 -0.02 2.29 16 10 C 0.04 1.09 4.52 86.31 0.39 1.48 16 11 N -0.54 -14.67 4.40 -900.32 -3.96 -18.63 16 12 C 0.05 1.38 5.45 85.56 0.47 1.84 16 13 C 0.49 20.15 7.39 87.66 0.65 20.80 16 14 O -0.58 -30.17 14.68 -3.02 -0.04 -30.22 16 15 N -0.71 -30.56 5.55 -466.81 -2.59 -33.15 16 16 C 0.27 15.19 5.43 85.63 0.46 15.65 16 17 C -0.55 -30.60 9.28 25.60 0.24 -30.37 16 18 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 21 Si 0.99 42.73 29.54 68.60 2.03 44.75 16 22 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.02 0.31 5.60 86.31 0.48 0.79 16 26 C 0.06 1.04 6.72 86.31 0.58 1.62 16 27 N -0.67 -13.10 6.44 -495.01 -3.19 -16.28 16 28 C -0.17 -5.17 9.61 22.36 0.21 -4.95 16 29 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.15 2.14 6.30 -2.91 -0.02 2.12 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.14 2.08 6.58 -2.91 -0.02 2.06 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 2.10 6.09 -2.39 -0.01 2.09 16 37 H 0.13 2.79 8.02 -2.39 -0.02 2.77 16 38 H 0.08 1.83 8.12 -2.38 -0.02 1.81 16 39 H 0.41 14.23 8.32 -92.71 -0.77 13.46 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 43 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 44 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.35 5.32 6.99 -89.70 -0.63 4.69 16 48 H 0.11 3.63 8.04 -2.91 -0.02 3.61 16 Total: -1.00 -80.44 388.62 -2.99 -83.44 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.42 Total: 30.31 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.87 Total: 6.88 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -9.45 Total: -125.08 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.01 Total: -40.29 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -80.44 -2.99 -83.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879526516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.298 kcal (2) G-P(sol) polarization free energy of solvation -80.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds