Wall clock time and date at job start Tue Mar 31 2020 17:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99957 * 2 1 4 4 C 1.53000 * 109.47082 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47230 * 65.00224 * 4 3 2 6 6 C 1.46499 * 119.99687 * 270.00162 * 5 4 3 7 7 C 1.50699 * 109.46973 * 269.99256 * 6 5 4 8 8 H 1.08001 * 119.99907 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00092 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00007 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47139 * 89.99904 * 11 9 7 13 13 H 1.48505 * 109.47240 * 210.00013 * 11 9 7 14 14 H 1.48504 * 109.47265 * 329.99749 * 11 9 7 15 15 C 1.34771 * 119.99687 * 89.99810 * 5 4 3 16 16 O 1.21585 * 119.99895 * 180.02562 * 15 5 4 17 17 N 1.34777 * 120.00492 * 359.97438 * 15 5 4 18 18 C 1.39388 * 120.00203 * 185.08676 * 17 15 5 19 19 C 1.39066 * 119.78162 * 174.83965 * 18 17 15 20 20 C 1.38112 * 118.77641 * 180.10987 * 19 18 17 21 21 C 1.39389 * 118.98371 * 359.88517 * 20 19 18 22 22 C 1.37508 * 119.28851 * 359.93776 * 21 20 19 23 23 N 1.31991 * 119.78394 * 354.82034 * 18 17 15 24 24 C 1.50743 * 122.34978 * 180.40689 * 22 21 20 25 25 C 1.52721 * 110.58438 * 342.11361 * 24 22 21 26 26 C 1.53326 * 108.41950 * 51.28731 * 25 24 22 27 27 C 1.50515 * 117.87618 * 179.71912 * 21 20 19 28 28 H 1.09001 * 109.47344 * 59.99597 * 1 2 3 29 29 H 1.09000 * 109.46648 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46597 * 299.99498 * 1 2 3 31 31 H 1.09001 * 109.47144 * 60.00184 * 3 2 1 32 32 H 1.08993 * 109.47322 * 300.00467 * 3 2 1 33 33 H 1.08998 * 109.47104 * 305.00138 * 4 3 2 34 34 H 1.09002 * 109.47219 * 184.99987 * 4 3 2 35 35 H 1.08997 * 109.47585 * 29.99897 * 6 5 4 36 36 H 1.09000 * 109.46698 * 150.00178 * 6 5 4 37 37 H 0.97003 * 120.00190 * 179.97438 * 10 9 7 38 38 H 0.97003 * 119.99597 * 5.09358 * 17 15 5 39 39 H 1.07994 * 120.60851 * 0.08479 * 19 18 17 40 40 H 1.07996 * 120.50986 * 180.16452 * 20 19 18 41 41 H 1.08988 * 109.25477 * 221.82827 * 24 22 21 42 42 H 1.09003 * 109.22213 * 102.37672 * 24 22 21 43 43 H 1.08995 * 109.67648 * 291.55603 * 25 24 22 44 44 H 1.08995 * 109.67269 * 171.01442 * 25 24 22 45 45 H 1.09002 * 109.69027 * 170.44812 * 26 25 24 46 46 H 1.08998 * 109.68961 * 49.87221 * 26 25 24 47 47 H 1.08995 * 109.25912 * 282.96943 * 27 21 20 48 48 H 1.09002 * 109.26005 * 42.41454 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2978 -0.9451 8 1 6.2196 -0.5459 -0.6540 9 6 5.8606 -2.6288 -0.9529 10 7 7.0786 -2.9829 -0.6054 11 14 4.6179 -3.9291 -1.4571 12 1 4.7035 -4.1537 -2.9225 13 1 4.9120 -5.1980 -0.7438 14 1 3.2502 -3.4694 -1.1059 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8191 -3.3611 17 7 4.1418 2.6737 -2.2391 18 6 4.3341 3.4619 -3.3725 19 6 4.1047 4.8320 -3.3081 20 6 4.2996 5.5929 -4.4442 21 6 4.7213 4.9637 -5.6144 22 6 4.9335 3.6051 -5.6087 23 7 4.7332 2.9031 -4.4997 24 6 5.3980 2.8562 -6.8317 25 6 5.1628 3.6868 -8.0915 26 6 5.7680 5.0787 -7.8741 27 6 4.9196 5.8156 -6.8393 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3853 -1.3630 -0.6735 36 1 3.9120 -1.2113 -2.3670 37 1 7.3315 -3.9194 -0.6105 38 1 3.9218 3.0895 -1.3908 39 1 3.7798 5.2924 -2.3869 40 1 4.1323 6.6596 -4.4250 41 1 4.8465 1.9195 -6.9106 42 1 6.4622 2.6398 -6.7373 43 1 4.0926 3.7769 -8.2772 44 1 5.6443 3.2063 -8.9431 45 1 5.7639 5.6318 -8.8134 46 1 6.7904 4.9817 -7.5089 47 1 3.9484 6.0524 -7.2736 48 1 5.4215 6.7409 -6.5562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880949902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:45 Heat of formation + Delta-G solvation = -22.984055 kcal Electronic energy + Delta-G solvation = -29254.086252 eV Core-core repulsion = 25309.780427 eV Total energy + Delta-G solvation = -3944.305824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81157 -39.47331 -37.73437 -36.71870 -34.87282 -34.06594 -33.14293 -32.41630 -29.94070 -29.78502 -29.34943 -27.43066 -26.08315 -24.35788 -23.24635 -22.79162 -22.65568 -21.87439 -19.99803 -19.37042 -17.86986 -17.06403 -16.83268 -16.40989 -16.06808 -15.69631 -15.61726 -15.09075 -14.88164 -14.57703 -14.28628 -14.13139 -13.92104 -13.83761 -13.47176 -13.35361 -13.21849 -12.71424 -12.50686 -12.30646 -12.25779 -12.11653 -11.83636 -11.77152 -11.47465 -11.01096 -10.98852 -10.85020 -10.83809 -10.69430 -10.35214 -10.16901 -9.95591 -9.66752 -9.54459 -9.46512 -9.38740 -8.62604 -8.45960 -7.95448 -7.55627 -5.97009 -3.94172 1.26181 1.45966 2.95575 3.40419 3.46249 3.50109 3.69198 3.89970 4.13348 4.21539 4.47172 4.52193 4.61479 4.79436 4.80569 4.94807 4.99540 5.15021 5.16440 5.26831 5.33113 5.35939 5.38955 5.43132 5.43884 5.47182 5.48775 5.52644 5.64772 5.68263 5.73025 5.76627 5.88367 5.95509 6.02793 6.12564 6.14226 6.22600 6.38224 6.52011 6.66052 7.05201 7.10216 7.28743 7.34219 7.50795 7.76188 8.25647 8.59544 8.63873 9.06052 9.30935 9.64606 11.16624 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.003533 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.308921 B = 7923.576728 C = 9410.492094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.042 3.958 4 C 0.112 3.888 5 N -0.597 5.597 6 C 0.236 3.764 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.688 3.312 16 O -0.518 6.518 17 N -0.677 5.677 18 C 0.394 3.606 19 C -0.222 4.222 20 C -0.049 4.049 21 C -0.178 4.178 22 C 0.174 3.826 23 N -0.474 5.474 24 C -0.071 4.071 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.066 4.066 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.405 0.595 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.802 20.122 -6.295 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.291 6.291 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.333 5.333 6 C 0.116 3.884 7 C -0.564 4.564 8 H 0.090 0.910 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.389 3.611 16 O -0.388 6.388 17 N -0.327 5.327 18 C 0.159 3.841 19 C -0.246 4.246 20 C -0.075 4.075 21 C -0.182 4.182 22 C 0.037 3.963 23 N -0.189 5.189 24 C -0.108 4.108 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.104 4.104 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.242 0.758 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.177 18.329 -6.974 22.095 hybrid contribution -1.016 0.655 0.619 1.358 sum -11.193 18.984 -6.355 22.936 Atomic orbital electron populations 1.22711 0.81898 1.02608 0.99285 1.88064 1.18854 1.27005 1.95176 1.23157 0.95304 0.85508 0.99646 1.21475 0.91074 0.98699 0.90067 1.47213 1.68526 1.08538 1.09015 1.19602 0.97527 0.73361 0.97940 1.21402 0.96259 0.93495 1.45275 0.90966 1.24812 0.95145 0.98313 0.94693 1.69907 1.18202 1.17133 1.48799 0.86876 0.82505 0.81310 0.79250 1.20042 1.21280 1.18641 1.16017 0.79881 0.80088 0.85116 1.91015 1.48753 1.70906 1.28129 1.43156 1.72944 1.06538 1.10070 1.18103 0.92084 0.87083 0.86811 1.21335 1.10005 0.92740 1.00559 1.21221 0.95164 0.99654 0.91419 1.20280 1.06642 0.94711 0.96582 1.20936 0.92894 0.89477 0.93024 1.67610 1.14370 1.39037 0.97835 1.20372 1.02364 0.98558 0.89533 1.21564 1.01321 0.95488 0.97146 1.21577 0.99597 0.96149 0.98573 1.20269 1.00217 0.97138 0.92732 0.94541 0.89793 0.94485 0.92790 0.93726 0.88267 0.90673 0.93826 0.94882 0.92747 0.75751 0.85083 0.85025 0.89365 0.89724 0.91639 0.91033 0.91499 0.91494 0.91118 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.04 9.53 -35.23 -0.34 -6.38 16 3 C 0.04 0.56 6.28 37.16 0.23 0.80 16 4 C 0.11 1.75 5.62 -4.04 -0.02 1.73 16 5 N -0.60 -12.78 2.42 -180.80 -0.44 -13.21 16 6 C 0.24 6.07 4.05 -5.19 -0.02 6.05 16 7 C -0.53 -15.64 9.94 -34.44 -0.34 -15.98 16 8 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.90 -28.65 13.96 55.43 0.77 -27.87 16 11 Si 0.87 22.52 27.47 -169.99 -4.67 17.85 16 12 H -0.27 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 15 C 0.69 15.17 8.24 -86.92 -0.72 14.45 16 16 O -0.52 -13.88 14.19 5.29 0.08 -13.81 16 17 N -0.68 -11.37 5.27 -15.89 -0.08 -11.45 16 18 C 0.39 6.61 7.43 -155.02 -1.15 5.46 16 19 C -0.22 -2.74 9.96 -39.32 -0.39 -3.13 16 20 C -0.05 -0.54 9.74 -39.20 -0.38 -0.92 16 21 C -0.18 -2.19 5.74 -104.55 -0.60 -2.79 16 22 C 0.17 2.70 6.62 -82.43 -0.55 2.15 16 23 N -0.47 -9.12 7.72 -8.62 -0.07 -9.19 16 24 C -0.07 -0.95 5.91 -28.01 -0.17 -1.12 16 25 C -0.12 -1.14 5.97 -26.71 -0.16 -1.30 16 26 C -0.12 -1.03 5.98 -26.68 -0.16 -1.19 16 27 C -0.07 -0.58 5.68 -28.09 -0.16 -0.74 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.66 8.07 -51.93 -0.42 1.24 16 34 H 0.08 0.90 6.29 -51.93 -0.33 0.57 16 35 H 0.04 1.10 6.18 -51.93 -0.32 0.78 16 36 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.41 5.07 6.40 -40.82 -0.26 4.81 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.09 1.32 8.14 -51.94 -0.42 0.90 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -38.85 386.95 -10.09 -48.94 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.61 Total: 2.24 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -3.57 Total: 7.04 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.19 Total: -61.73 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.26 Total: -20.19 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.85 -10.09 -48.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880949902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.960 kcal (2) G-P(sol) polarization free energy of solvation -38.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds