Wall clock time and date at job start Tue Mar 31 2020 17:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99957 * 2 1 4 4 C 1.53000 * 109.47082 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47230 * 65.00224 * 4 3 2 6 6 C 1.46499 * 119.99687 * 270.00162 * 5 4 3 7 7 C 1.50699 * 109.46973 * 269.99256 * 6 5 4 8 8 H 1.08001 * 119.99907 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00092 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00007 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47139 * 89.99904 * 11 9 7 13 13 H 1.48505 * 109.47240 * 210.00013 * 11 9 7 14 14 H 1.48504 * 109.47265 * 329.99749 * 11 9 7 15 15 C 1.34771 * 119.99687 * 89.99810 * 5 4 3 16 16 O 1.21585 * 119.99895 * 180.02562 * 15 5 4 17 17 N 1.34777 * 120.00492 * 359.97438 * 15 5 4 18 18 C 1.39388 * 120.00203 * 185.08676 * 17 15 5 19 19 C 1.39066 * 119.78162 * 174.83965 * 18 17 15 20 20 C 1.38112 * 118.77641 * 180.10987 * 19 18 17 21 21 C 1.39389 * 118.98371 * 359.88517 * 20 19 18 22 22 C 1.37508 * 119.28851 * 359.93776 * 21 20 19 23 23 N 1.31991 * 119.78394 * 354.82034 * 18 17 15 24 24 C 1.50743 * 122.34978 * 180.40689 * 22 21 20 25 25 C 1.52721 * 110.58438 * 342.11361 * 24 22 21 26 26 C 1.53326 * 108.41950 * 51.28731 * 25 24 22 27 27 C 1.50515 * 117.87618 * 179.71912 * 21 20 19 28 28 H 1.09001 * 109.47344 * 59.99597 * 1 2 3 29 29 H 1.09000 * 109.46648 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46597 * 299.99498 * 1 2 3 31 31 H 1.09001 * 109.47144 * 60.00184 * 3 2 1 32 32 H 1.08993 * 109.47322 * 300.00467 * 3 2 1 33 33 H 1.08998 * 109.47104 * 305.00138 * 4 3 2 34 34 H 1.09002 * 109.47219 * 184.99987 * 4 3 2 35 35 H 1.08997 * 109.47585 * 29.99897 * 6 5 4 36 36 H 1.09000 * 109.46698 * 150.00178 * 6 5 4 37 37 H 0.97003 * 120.00190 * 179.97438 * 10 9 7 38 38 H 0.97003 * 119.99597 * 5.09358 * 17 15 5 39 39 H 1.07994 * 120.60851 * 0.08479 * 19 18 17 40 40 H 1.07996 * 120.50986 * 180.16452 * 20 19 18 41 41 H 1.08988 * 109.25477 * 221.82827 * 24 22 21 42 42 H 1.09003 * 109.22213 * 102.37672 * 24 22 21 43 43 H 1.08995 * 109.67648 * 291.55603 * 25 24 22 44 44 H 1.08995 * 109.67269 * 171.01442 * 25 24 22 45 45 H 1.09002 * 109.69027 * 170.44812 * 26 25 24 46 46 H 1.08998 * 109.68961 * 49.87221 * 26 25 24 47 47 H 1.08995 * 109.25912 * 282.96943 * 27 21 20 48 48 H 1.09002 * 109.26005 * 42.41454 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2978 -0.9451 8 1 6.2196 -0.5459 -0.6540 9 6 5.8606 -2.6288 -0.9529 10 7 7.0786 -2.9829 -0.6054 11 14 4.6179 -3.9291 -1.4571 12 1 4.7035 -4.1537 -2.9225 13 1 4.9120 -5.1980 -0.7438 14 1 3.2502 -3.4694 -1.1059 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8191 -3.3611 17 7 4.1418 2.6737 -2.2391 18 6 4.3341 3.4619 -3.3725 19 6 4.1047 4.8320 -3.3081 20 6 4.2996 5.5929 -4.4442 21 6 4.7213 4.9637 -5.6144 22 6 4.9335 3.6051 -5.6087 23 7 4.7332 2.9031 -4.4997 24 6 5.3980 2.8562 -6.8317 25 6 5.1628 3.6868 -8.0915 26 6 5.7680 5.0787 -7.8741 27 6 4.9196 5.8156 -6.8393 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3853 -1.3630 -0.6735 36 1 3.9120 -1.2113 -2.3670 37 1 7.3315 -3.9194 -0.6105 38 1 3.9218 3.0895 -1.3908 39 1 3.7798 5.2924 -2.3869 40 1 4.1323 6.6596 -4.4250 41 1 4.8465 1.9195 -6.9106 42 1 6.4622 2.6398 -6.7373 43 1 4.0926 3.7769 -8.2772 44 1 5.6443 3.2063 -8.9431 45 1 5.7639 5.6318 -8.8134 46 1 6.7904 4.9817 -7.5089 47 1 3.9484 6.0524 -7.2736 48 1 5.4215 6.7409 -6.5562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880949902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:44 Heat of formation + Delta-G solvation = -49.880218 kcal Electronic energy + Delta-G solvation = -29255.252557 eV Core-core repulsion = 25309.780427 eV Total energy + Delta-G solvation = -3945.472130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.01720 -40.85141 -38.85995 -37.79936 -36.51177 -35.48121 -34.57470 -34.13167 -31.46128 -30.82521 -30.40450 -29.14689 -27.13036 -25.61834 -24.42321 -24.06566 -23.82094 -23.28431 -21.05287 -20.75018 -19.24904 -19.08998 -18.39225 -17.45786 -17.20252 -16.89005 -16.73676 -16.56286 -16.28663 -15.78425 -15.73643 -15.35621 -15.15203 -14.94013 -14.72420 -14.54871 -14.39478 -14.19981 -13.83328 -13.62903 -13.53169 -13.18266 -13.12457 -12.95230 -12.87583 -12.74946 -12.47968 -12.04580 -11.98734 -11.79962 -11.74383 -11.69045 -11.52283 -11.30853 -11.15761 -10.81523 -10.58185 -10.53097 -9.91286 -9.47855 -8.93384 -8.33281 -6.36508 0.19927 0.46941 1.30667 1.35301 1.45453 1.57178 2.21755 2.31854 2.80701 2.89188 2.97660 3.02492 3.41670 3.77645 3.96416 4.02243 4.04916 4.09354 4.12465 4.19044 4.30245 4.32619 4.40586 4.46393 4.52266 4.56751 4.59806 4.69239 4.81968 4.82984 4.86007 4.89552 4.91313 4.97047 4.97842 5.06685 5.12718 5.20118 5.27936 5.43724 5.46476 5.47647 5.48870 5.59600 5.87824 5.96077 6.27489 6.31474 6.63303 6.86798 7.24244 7.36109 7.72207 8.83951 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.003533 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.308921 B = 7923.576728 C = 9410.492094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.415 6.415 3 C 0.048 3.952 4 C 0.103 3.897 5 N -0.605 5.605 6 C 0.256 3.744 7 C -0.533 4.533 8 H 0.028 0.972 9 C 0.013 3.987 10 N -0.946 5.946 11 Si 0.944 3.056 12 H -0.279 1.279 13 H -0.271 1.271 14 H -0.241 1.241 15 C 0.685 3.315 16 O -0.581 6.581 17 N -0.660 5.660 18 C 0.351 3.649 19 C -0.201 4.201 20 C -0.045 4.045 21 C -0.166 4.166 22 C 0.136 3.864 23 N -0.535 5.535 24 C -0.072 4.072 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.065 4.065 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.425 0.575 39 H 0.173 0.827 40 H 0.181 0.819 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 23.862 -6.271 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.029 4.029 4 C -0.020 4.020 5 N -0.340 5.340 6 C 0.133 3.867 7 C -0.571 4.571 8 H 0.046 0.954 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.205 1.205 13 H -0.195 1.195 14 H -0.165 1.165 15 C 0.386 3.614 16 O -0.456 6.456 17 N -0.313 5.313 18 C 0.117 3.883 19 C -0.225 4.225 20 C -0.071 4.071 21 C -0.169 4.169 22 C 0.000 4.000 23 N -0.250 5.250 24 C -0.110 4.110 25 C -0.147 4.147 26 C -0.157 4.157 27 C -0.103 4.103 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.077 0.923 38 H 0.266 0.734 39 H 0.190 0.810 40 H 0.198 0.802 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.109 0.891 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.757 22.163 -6.913 26.490 hybrid contribution -0.151 -0.362 0.598 0.715 sum -12.908 21.801 -6.315 26.111 Atomic orbital electron populations 1.22869 0.79891 1.03268 1.00785 1.87990 1.21215 1.28761 1.95541 1.23157 0.92872 0.85042 1.01866 1.21863 0.93554 0.99809 0.86759 1.47131 1.68725 1.07097 1.11058 1.19087 0.94964 0.76586 0.96080 1.21621 0.97526 0.92901 1.45088 0.95403 1.25770 0.97322 1.00878 0.94506 1.70048 1.20414 1.18036 1.50122 0.85764 0.80606 0.78439 0.78463 1.20478 1.19548 1.16466 1.16257 0.79192 0.81714 0.84272 1.90964 1.51472 1.72661 1.30492 1.42727 1.72694 1.04420 1.11447 1.18549 0.94651 0.88818 0.86257 1.21748 1.07556 0.90429 1.02733 1.21818 0.93451 1.01759 0.90074 1.20757 1.03846 0.93522 0.98785 1.21234 0.95024 0.91304 0.92442 1.67384 1.15923 1.41983 0.99724 1.20397 1.00759 0.98187 0.91630 1.21543 1.01913 0.96065 0.95184 1.21593 0.98880 0.95203 0.99974 1.20415 1.01563 0.97170 0.91121 0.94061 0.89736 0.91831 0.88396 0.93281 0.89715 0.86910 0.92797 0.97596 0.92326 0.73402 0.80984 0.80174 0.92627 0.91346 0.91196 0.89846 0.88626 0.92399 0.89138 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.42 -12.90 9.53 -148.98 -1.42 -14.32 16 3 C 0.05 1.18 6.28 71.98 0.45 1.63 16 4 C 0.10 3.16 5.62 86.38 0.49 3.65 16 5 N -0.61 -26.77 2.42 -844.20 -2.04 -28.82 16 6 C 0.26 13.69 4.05 85.63 0.35 14.03 16 7 C -0.53 -33.46 9.94 25.60 0.25 -33.20 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C 0.01 0.81 5.47 84.65 0.46 1.27 16 10 N -0.95 -62.53 13.96 21.45 0.30 -62.23 16 11 Si 0.94 47.88 27.47 68.60 1.88 49.76 16 12 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 13 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 14 H -0.24 -11.34 6.54 99.48 0.65 -10.69 16 15 C 0.68 31.66 8.24 179.06 1.47 33.13 16 16 O -0.58 -33.60 14.19 -3.98 -0.06 -33.65 16 17 N -0.66 -22.31 5.27 -322.43 -1.70 -24.01 16 18 C 0.35 11.79 7.43 133.04 0.99 12.78 16 19 C -0.20 -4.34 9.96 22.44 0.22 -4.12 16 20 C -0.05 -0.82 9.74 22.52 0.22 -0.60 16 21 C -0.17 -3.70 5.74 -19.82 -0.11 -3.82 16 22 C 0.14 4.36 6.62 42.26 0.28 4.64 16 23 N -0.53 -21.77 7.72 -181.20 -1.40 -23.17 16 24 C -0.07 -2.12 5.91 29.77 0.18 -1.94 16 25 C -0.11 -2.07 5.97 30.61 0.18 -1.89 16 26 C -0.12 -1.72 5.98 30.63 0.18 -1.54 16 27 C -0.07 -0.90 5.68 29.71 0.17 -0.73 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 34 H 0.11 2.50 6.29 -2.39 -0.02 2.49 16 35 H 0.05 2.77 6.18 -2.39 -0.01 2.75 16 36 H 0.01 0.35 6.85 -2.39 -0.02 0.33 16 37 H 0.27 16.43 8.31 -92.71 -0.77 15.65 16 38 H 0.42 9.97 6.40 -92.71 -0.59 9.38 16 39 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.10 0.90 8.13 -2.39 -0.02 0.88 16 Total: -1.00 -95.17 386.95 2.91 -92.25 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.31 Total: 19.02 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.03 Total: 25.17 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -4.84 Total: -138.23 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -1.48 Total: -47.98 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.88 Total: 49.76 kcal Total: -95.17 2.91 -92.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880949902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.373 kcal (2) G-P(sol) polarization free energy of solvation -95.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds