Wall clock time and date at job start Tue Mar 31 2020 17:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 114.00093 * 2 1 4 4 C 1.52993 * 109.47166 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.53039 * 109.45912 * 174.99627 * 5 4 3 7 7 C 1.53194 * 109.30940 * 181.38495 * 6 5 4 8 8 N 1.46931 * 108.77842 * 305.36812 * 7 6 5 9 9 C 1.34776 * 120.62907 * 233.58679 * 8 7 6 10 10 O 1.21568 * 120.00285 * 354.97293 * 9 8 7 11 11 N 1.34779 * 119.99761 * 174.97538 * 9 8 7 12 12 C 1.39235 * 120.00017 * 185.80335 * 11 9 8 13 13 C 1.39691 * 119.57856 * 18.18235 * 12 11 9 14 14 C 1.38640 * 119.49641 * 180.02562 * 13 12 11 15 15 C 1.38350 * 118.67472 * 359.97438 * 14 13 12 16 16 C 1.40571 * 119.12790 * 359.97438 * 15 14 13 17 17 C 1.41342 * 119.78358 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00260 * 359.97438 * 17 16 15 19 19 C 1.40023 * 119.99740 * 180.02562 * 17 16 15 20 20 N 1.30746 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99946 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47586 * 59.99668 * 21 19 17 23 23 H 1.48507 * 109.47405 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47004 * 299.99169 * 21 19 17 25 25 N 1.31913 * 119.57752 * 197.90627 * 12 11 9 26 26 C 1.46931 * 118.73559 * 53.85871 * 8 7 6 27 27 C 1.53032 * 109.45825 * 295.06935 * 5 4 3 28 28 H 1.08996 * 109.47232 * 59.99204 * 1 2 3 29 29 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46522 * 299.99702 * 1 2 3 31 31 H 1.09005 * 109.46979 * 60.00283 * 3 2 1 32 32 H 1.09000 * 109.47447 * 300.00930 * 3 2 1 33 33 H 1.08996 * 109.47568 * 60.00182 * 4 3 2 34 34 H 1.09002 * 109.47290 * 299.99978 * 4 3 2 35 35 H 1.09005 * 109.45652 * 55.02826 * 5 4 3 36 36 H 1.09002 * 109.49424 * 61.44073 * 6 5 4 37 37 H 1.08997 * 109.52640 * 301.35069 * 6 5 4 38 38 H 1.09002 * 109.58726 * 185.58151 * 7 6 5 39 39 H 1.09000 * 109.70123 * 65.22639 * 7 6 5 40 40 H 0.97005 * 119.99602 * 5.79404 * 11 9 8 41 41 H 1.08002 * 120.24444 * 359.97438 * 13 12 11 42 42 H 1.08005 * 120.66056 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.43594 * 179.97438 * 15 14 13 44 44 H 0.96999 * 120.00374 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58281 * 65.93040 * 26 8 7 46 46 H 1.08994 * 109.58295 * 186.35550 * 26 8 7 47 47 H 1.09005 * 109.49882 * 298.56201 * 27 5 4 48 48 H 1.09001 * 109.50412 * 58.62676 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6785 2.4633 0.1252 7 6 6.2952 3.8652 0.1603 8 7 5.8435 4.6104 -1.0227 9 6 6.7349 5.1927 -1.8490 10 8 7.9183 5.1829 -1.5708 11 7 6.3143 5.7861 -2.9837 12 6 7.2425 6.2809 -3.8960 13 6 8.5671 5.8408 -3.8393 14 6 9.4901 6.3350 -4.7482 15 6 9.0667 7.2554 -5.6904 16 6 7.7198 7.6580 -5.6966 17 6 7.2722 8.5971 -6.6534 18 1 7.9642 9.0032 -7.3763 19 6 5.9317 9.0017 -6.6633 20 7 5.0941 8.5104 -5.7878 21 14 5.3399 10.2422 -7.9282 22 1 5.5615 9.7014 -9.2934 23 1 3.8913 10.5008 -7.7279 24 1 6.0961 11.5103 -7.7693 25 7 6.8587 7.1551 -4.8062 26 6 4.4014 4.7137 -1.2844 27 6 3.8062 3.2976 -1.3064 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8568 0.6439 -0.8908 34 1 3.8575 0.6435 0.8891 35 1 3.7677 3.1532 0.8427 36 1 6.0720 1.9141 -0.7302 37 1 5.9279 1.9330 1.0442 38 1 7.3823 3.7866 0.1496 39 1 5.9753 4.3848 1.0636 40 1 5.3649 5.8683 -3.1648 41 1 8.8700 5.1217 -3.0926 42 1 10.5189 6.0074 -4.7217 43 1 9.7617 7.6592 -6.4116 44 1 4.1654 8.7904 -5.7949 45 1 3.9282 5.2998 -0.4967 46 1 4.2387 5.1950 -2.2487 47 1 4.2174 2.7405 -2.1483 48 1 2.7226 3.3607 -1.4065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:33 Heat of formation + Delta-G solvation = -31.448085 kcal Electronic energy + Delta-G solvation = -28521.692858 eV Core-core repulsion = 24577.020006 eV Total energy + Delta-G solvation = -3944.672852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48077 -38.85127 -38.06790 -37.25065 -34.38667 -34.29597 -33.21108 -31.25731 -30.33135 -30.18485 -28.91188 -26.92312 -25.52508 -24.88846 -23.55082 -22.62832 -21.55975 -21.33456 -20.40469 -19.26661 -18.15718 -17.39834 -16.70009 -16.41486 -16.25521 -15.50327 -15.35470 -15.30362 -14.77164 -14.58845 -14.45122 -14.26017 -13.88163 -13.74972 -13.45851 -13.18334 -13.09771 -12.85778 -12.39435 -12.21408 -12.08164 -11.93167 -11.64176 -11.59256 -11.41588 -11.22444 -11.11924 -11.02989 -10.88419 -10.62293 -10.60259 -10.51646 -10.10210 -9.95997 -9.83583 -9.26100 -9.02732 -8.51923 -7.99226 -7.64560 -7.02248 -6.38973 -4.47754 2.68837 2.86801 2.99129 3.08113 3.11322 3.27691 3.39417 3.70055 3.96115 4.16767 4.43802 4.52390 4.62165 4.81163 4.82659 4.88671 4.94519 5.00227 5.09390 5.11628 5.16425 5.25546 5.31809 5.34205 5.51061 5.59419 5.61457 5.70819 5.81279 5.84992 5.90945 5.93323 5.96152 6.18291 6.21551 6.46076 6.53907 6.79341 6.81786 6.84588 6.99216 7.09337 7.22941 7.54923 7.63553 7.94253 8.06761 8.19852 8.42526 8.72915 8.91507 9.07113 10.08542 10.33656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002612 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.586052 B =10719.162661 C =12357.084287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.128 4.128 7 C 0.131 3.869 8 N -0.630 5.630 9 C 0.710 3.290 10 O -0.569 6.569 11 N -0.659 5.659 12 C 0.373 3.627 13 C -0.312 4.312 14 C -0.049 4.049 15 C -0.292 4.292 16 C 0.280 3.720 17 C -0.436 4.436 18 H 0.084 0.916 19 C 0.072 3.928 20 N -0.725 5.725 21 Si 0.907 3.093 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.265 1.265 25 N -0.509 5.509 26 C 0.109 3.891 27 C -0.133 4.133 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.402 0.598 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.270 0.730 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 -12.105 12.103 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.167 4.167 7 C 0.008 3.992 8 N -0.369 5.369 9 C 0.412 3.588 10 O -0.445 6.445 11 N -0.307 5.307 12 C 0.138 3.862 13 C -0.337 4.337 14 C -0.074 4.074 15 C -0.315 4.315 16 C 0.154 3.846 17 C -0.468 4.468 18 H 0.102 0.898 19 C -0.153 4.153 20 N -0.347 5.347 21 Si 0.731 3.269 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.190 1.190 25 N -0.228 5.228 26 C -0.014 4.014 27 C -0.171 4.171 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.463 -12.010 12.351 20.156 hybrid contribution -0.347 0.644 -0.636 0.969 sum -10.810 -11.366 11.716 19.578 Atomic orbital electron populations 1.22734 0.81064 1.02706 1.00007 1.87869 1.19694 1.28377 1.95438 1.22660 0.94363 0.84481 1.00307 1.21559 0.92762 0.97247 1.03475 1.21077 0.95699 0.95221 0.98171 1.21981 0.94542 0.97288 1.02848 1.21403 1.01190 0.90356 0.86240 1.47278 1.05401 1.56762 1.27491 1.15676 0.84778 0.78630 0.79717 1.90811 1.14622 1.64457 1.74650 1.42459 1.10104 1.59192 1.18984 1.18246 0.86380 0.92005 0.89604 1.21665 0.93518 1.11425 1.07129 1.20808 0.97290 0.95399 0.93904 1.21693 0.97651 1.07367 1.04746 1.18161 0.86756 0.90240 0.89466 1.19511 0.94527 1.20088 1.12694 0.89767 1.26026 0.96947 0.96401 0.95879 1.70114 1.03703 1.32832 1.28019 0.86406 0.77973 0.81131 0.81354 1.18994 1.20372 1.19003 1.68018 1.36543 1.11643 1.06569 1.21738 0.80785 0.96967 1.01958 1.22146 1.00812 0.95979 0.98196 0.94007 0.89704 0.94137 0.93394 0.92920 0.90946 0.91023 0.90761 0.91175 0.90619 0.88686 0.91936 0.76039 0.84866 0.88396 0.88297 0.91902 0.91263 0.89937 0.90957 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.78 10.70 -35.23 -0.38 -4.16 16 3 C 0.06 0.46 5.69 37.15 0.21 0.67 16 4 C -0.11 -0.89 5.05 -26.73 -0.14 -1.02 16 5 C -0.08 -0.66 2.15 -90.58 -0.19 -0.85 16 6 C -0.13 -1.15 5.36 -26.61 -0.14 -1.30 16 7 C 0.13 1.52 6.42 -3.71 -0.02 1.49 16 8 N -0.63 -8.89 2.97 -178.23 -0.53 -9.42 16 9 C 0.71 13.71 8.14 -86.92 -0.71 13.00 16 10 O -0.57 -12.76 12.55 5.31 0.07 -12.69 16 11 N -0.66 -13.79 5.33 -15.79 -0.08 -13.88 16 12 C 0.37 9.49 7.52 -155.00 -1.16 8.32 16 13 C -0.31 -7.87 8.84 -38.89 -0.34 -8.21 16 14 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 15 C -0.29 -7.47 9.83 -38.66 -0.38 -7.85 16 16 C 0.28 7.83 6.55 -85.00 -0.56 7.28 16 17 C -0.44 -11.74 9.14 -37.73 -0.34 -12.08 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 19 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 20 N -0.72 -18.86 11.46 55.55 0.64 -18.23 16 21 Si 0.91 18.53 29.56 -169.99 -5.02 13.51 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 N -0.51 -14.08 7.89 -10.26 -0.08 -14.16 16 26 C 0.11 1.20 6.46 -3.48 -0.02 1.18 16 27 C -0.13 -1.18 5.16 -26.39 -0.14 -1.32 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.39 6.53 -51.93 -0.34 0.05 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.40 7.60 6.28 -40.82 -0.26 7.34 16 41 H 0.13 3.34 5.29 -52.55 -0.28 3.06 16 42 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 43 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.97 5.57 -51.93 -0.29 0.69 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.55 6.50 -51.93 -0.34 0.21 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -32.56 381.90 -10.29 -42.85 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.33 Total: 9.67 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.32 Total: 0.75 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.06 Total: -55.68 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.31 Total: -16.85 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.56 -10.29 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.406 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds