Wall clock time and date at job start Tue Mar 31 2020 17:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99830 * 2 1 4 4 C 1.53006 * 109.47089 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47068 * 175.00127 * 4 3 2 6 6 C 1.53004 * 109.46707 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.46994 * 299.99814 * 6 5 4 8 8 N 1.46501 * 109.46717 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00168 * 154.99826 * 8 7 6 10 10 O 1.21580 * 119.99416 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00471 * 180.02562 * 9 8 7 12 12 C 1.39243 * 120.00159 * 183.70955 * 11 9 8 13 13 C 1.39687 * 119.57760 * 339.04140 * 12 11 9 14 14 C 1.38643 * 119.49525 * 180.02562 * 13 12 11 15 15 C 1.38354 * 118.67573 * 359.74602 * 14 13 12 16 16 C 1.40570 * 119.12712 * 0.47343 * 15 14 13 17 17 C 1.41333 * 119.78877 * 179.79379 * 16 15 14 18 18 H 1.07999 * 119.99695 * 4.86525 * 17 16 15 19 19 C 1.40029 * 120.00227 * 184.86456 * 17 16 15 20 20 N 1.30746 * 119.99676 * 184.81686 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 4.82431 * 19 17 16 22 22 H 1.48500 * 109.47238 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47046 * 299.99644 * 21 19 17 24 24 H 1.48502 * 109.47529 * 59.99666 * 21 19 17 25 25 N 1.31911 * 119.57725 * 159.01891 * 12 11 9 26 26 C 1.52996 * 109.47241 * 60.00513 * 7 6 5 27 27 C 1.52997 * 109.46806 * 295.00474 * 4 3 2 28 28 H 1.08997 * 109.46957 * 300.00182 * 1 2 3 29 29 H 1.09002 * 109.46847 * 59.99867 * 1 2 3 30 30 H 1.08998 * 109.46864 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47182 * 59.99958 * 3 2 1 32 32 H 1.09001 * 109.47220 * 299.99969 * 3 2 1 33 33 H 1.08998 * 109.46761 * 55.00112 * 4 3 2 34 34 H 1.08998 * 109.47341 * 60.00341 * 5 4 3 35 35 H 1.09001 * 109.47167 * 299.99807 * 5 4 3 36 36 H 1.09008 * 109.46416 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.46904 * 60.00432 * 6 5 4 38 38 H 1.08998 * 109.47432 * 299.99982 * 7 6 5 39 39 H 0.97006 * 120.00508 * 335.00134 * 8 7 6 40 40 H 0.96995 * 120.00084 * 3.71100 * 11 9 8 41 41 H 1.08002 * 120.24949 * 359.97438 * 13 12 11 42 42 H 1.08003 * 120.66220 * 180.02562 * 14 13 12 43 43 H 1.07992 * 120.43635 * 180.27369 * 15 14 13 44 44 H 0.96999 * 120.00249 * 355.00108 * 20 19 17 45 45 H 1.08998 * 109.47341 * 59.99413 * 26 7 6 46 46 H 1.09001 * 109.47167 * 179.97438 * 26 7 6 47 47 H 1.08998 * 109.47165 * 299.99390 * 27 4 3 48 48 H 1.08996 * 109.47704 * 60.00105 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1574 2.5769 -0.1250 6 6 5.6826 2.4560 -0.1250 7 6 6.1428 1.8080 1.1823 8 7 7.6033 1.6928 1.1825 9 6 8.2750 1.6397 2.3498 10 8 7.6687 1.6869 3.4026 11 7 9.6185 1.5342 2.3501 12 6 10.3062 1.4016 3.5535 13 6 9.6983 1.8083 4.7435 14 6 10.3848 1.6760 5.9408 15 6 11.6585 1.1361 5.9195 16 6 12.2175 0.7499 4.6889 17 6 13.5193 0.2008 4.6505 18 1 14.0505 0.0061 5.5704 19 6 14.1202 -0.0907 3.4198 20 7 15.2843 -0.6849 3.3852 21 14 13.2587 0.3695 1.8275 22 1 14.0972 -0.0438 0.6737 23 1 11.9455 -0.3205 1.7579 24 1 13.0486 1.8389 1.7850 25 7 11.5234 0.8930 3.5552 26 6 5.5210 0.4158 1.3080 27 6 3.9952 0.5368 1.3082 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5683 -0.8409 34 1 3.8414 3.1933 0.7165 35 1 3.8299 3.0384 -1.0566 36 1 6.1257 3.4479 -0.2150 37 1 5.9982 1.8397 -0.9669 38 1 5.8272 2.4243 2.0241 39 1 8.0870 1.6548 0.3425 40 1 10.1064 1.5507 1.5119 41 1 8.7013 2.2235 4.7310 42 1 9.9326 1.9839 6.8720 43 1 12.2171 1.0159 6.8359 44 1 15.7649 -0.8585 4.2097 45 1 5.8365 -0.2005 0.4662 46 1 5.8492 -0.0461 2.2392 47 1 3.6792 1.1533 2.1498 48 1 3.5522 -0.4550 1.3978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:17 Heat of formation + Delta-G solvation = -64.233116 kcal Electronic energy + Delta-G solvation = -28350.742866 eV Core-core repulsion = 24404.648348 eV Total energy + Delta-G solvation = -3946.094518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.50409 -39.35132 -38.31691 -37.47904 -34.65448 -34.32451 -33.43721 -31.07861 -31.03733 -30.89725 -29.15724 -27.17713 -25.40266 -25.05509 -23.03123 -22.59482 -21.73770 -21.18257 -20.45810 -19.98752 -18.60877 -17.82682 -17.13762 -16.64246 -16.21951 -15.95986 -15.50438 -15.28756 -15.01778 -14.81434 -14.51262 -14.30422 -13.96478 -13.78967 -13.51279 -13.06143 -12.93612 -12.77492 -12.68464 -12.50203 -12.36581 -12.19324 -11.84999 -11.75409 -11.40110 -11.35642 -11.15405 -10.89925 -10.82786 -10.65137 -10.41299 -10.30306 -10.00740 -9.96405 -9.64651 -9.32706 -9.13090 -8.97091 -8.50330 -7.71236 -7.40360 -7.18056 -4.73862 2.44298 2.68932 2.73932 3.37282 3.46496 3.53422 3.67621 3.96916 4.26494 4.35099 4.41340 4.51611 4.56922 4.67738 4.68943 4.88812 4.94619 4.98266 5.02334 5.14998 5.22344 5.23277 5.27984 5.30374 5.30984 5.50913 5.55333 5.65360 5.75633 5.83492 5.86693 5.91957 6.07924 6.13028 6.14971 6.22359 6.42603 6.49658 6.58133 6.76815 6.79478 6.95632 7.20800 7.37525 7.47690 7.67573 7.80458 7.96046 8.24092 8.37148 8.67729 8.80697 9.45099 10.02751 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002309 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.283027 B =12120.982587 C =12638.498367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.065 3.935 4 C -0.088 4.088 5 C -0.107 4.107 6 C -0.125 4.125 7 C 0.165 3.835 8 N -0.743 5.743 9 C 0.710 3.290 10 O -0.564 6.564 11 N -0.667 5.667 12 C 0.402 3.598 13 C -0.312 4.312 14 C -0.035 4.035 15 C -0.280 4.280 16 C 0.274 3.726 17 C -0.478 4.478 18 H 0.083 0.917 19 C 0.043 3.957 20 N -0.808 5.808 21 Si 1.155 2.845 22 H -0.334 1.334 23 H -0.280 1.280 24 H -0.295 1.295 25 N -0.600 5.600 26 C -0.132 4.132 27 C -0.106 4.106 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.395 0.605 40 H 0.402 0.598 41 H 0.148 0.852 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.283 0.717 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.330 5.599 -10.820 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.107 4.107 5 C -0.146 4.146 6 C -0.163 4.163 7 C 0.060 3.940 8 N -0.399 5.399 9 C 0.410 3.590 10 O -0.440 6.440 11 N -0.314 5.314 12 C 0.171 3.829 13 C -0.337 4.337 14 C -0.060 4.060 15 C -0.303 4.303 16 C 0.150 3.850 17 C -0.510 4.510 18 H 0.101 0.899 19 C -0.178 4.178 20 N -0.430 5.430 21 Si 0.991 3.009 22 H -0.268 1.268 23 H -0.208 1.208 24 H -0.224 1.224 25 N -0.326 5.326 26 C -0.171 4.171 27 C -0.145 4.145 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.229 0.771 40 H 0.237 0.763 41 H 0.165 0.835 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.208 5.057 -12.137 27.549 hybrid contribution -0.008 0.416 1.874 1.920 sum -24.216 5.472 -10.263 26.865 Atomic orbital electron populations 1.22733 0.81178 1.02752 0.99857 1.87893 1.19509 1.28054 1.95378 1.22615 0.93895 0.84612 1.00059 1.21210 0.92459 0.97223 0.99761 1.21444 0.94512 0.96137 1.02457 1.21784 0.95850 1.01411 0.97223 1.20825 0.77768 0.96786 0.98614 1.45235 1.07411 1.80226 1.06991 1.15742 0.81065 0.77820 0.84369 1.90803 1.67568 1.56417 1.29194 1.42319 1.05284 1.74718 1.09035 1.17832 0.89237 0.92044 0.83826 1.21764 1.04360 1.16419 0.91140 1.20956 0.93609 0.94734 0.96669 1.21588 0.97635 1.12935 0.98100 1.18257 0.92271 0.88443 0.86010 1.20703 0.98144 1.35950 0.96212 0.89917 1.27772 0.94854 0.89457 1.05742 1.70645 1.12379 1.26365 1.33595 0.81838 0.72702 0.76744 0.69613 1.26766 1.20754 1.22364 1.65951 1.08824 1.27173 1.30648 1.21982 0.95068 0.97050 1.02968 1.21490 0.94962 1.01566 0.96436 0.94099 0.94229 0.89662 0.93216 0.93419 0.90167 0.91306 0.91311 0.90930 0.91178 0.89246 0.77113 0.76345 0.83482 0.87681 0.87774 0.90632 0.91820 0.90937 0.91843 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.48 10.24 -35.23 -0.36 -3.85 16 3 C 0.06 0.46 5.32 37.16 0.20 0.66 16 4 C -0.09 -0.65 2.43 -90.62 -0.22 -0.87 16 5 C -0.11 -0.68 5.20 -26.73 -0.14 -0.81 16 6 C -0.12 -0.89 5.39 -26.73 -0.14 -1.04 16 7 C 0.17 1.71 2.45 -67.93 -0.17 1.55 16 8 N -0.74 -8.94 5.08 -58.68 -0.30 -9.24 16 9 C 0.71 12.16 8.43 -86.92 -0.73 11.43 16 10 O -0.56 -11.38 12.66 5.30 0.07 -11.31 16 11 N -0.67 -12.61 5.42 -15.79 -0.09 -12.70 16 12 C 0.40 9.42 7.51 -154.99 -1.16 8.25 16 13 C -0.31 -7.21 8.89 -38.89 -0.35 -7.56 16 14 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 15 C -0.28 -6.83 9.83 -38.66 -0.38 -7.21 16 16 C 0.27 7.34 6.40 -85.00 -0.54 6.80 16 17 C -0.48 -13.23 9.57 -37.73 -0.36 -13.59 16 18 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 19 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 20 N -0.81 -22.23 13.65 55.55 0.76 -21.47 16 21 Si 1.16 28.02 25.62 -169.99 -4.35 23.67 16 22 H -0.33 -8.01 7.11 56.52 0.40 -7.61 16 23 H -0.28 -6.69 6.60 56.52 0.37 -6.32 16 24 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 25 N -0.60 -15.43 4.54 -10.26 -0.05 -15.48 16 26 C -0.13 -1.41 5.50 -26.70 -0.15 -1.56 16 27 C -0.11 -0.98 5.10 -26.70 -0.14 -1.11 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 39 H 0.40 3.66 8.62 -40.82 -0.35 3.31 16 40 H 0.40 6.61 8.84 -40.82 -0.36 6.25 16 41 H 0.15 3.35 5.17 -52.92 -0.27 3.08 16 42 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 43 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 44 H 0.28 7.45 8.72 -40.82 -0.36 7.09 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -32.44 383.48 -9.94 -42.38 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.73 Total: 6.10 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.67 Total: -3.88 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.33 Total: -58.89 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.29 Total: -15.16 kcal Atomic # 14 Polarization: 28.02 SS G_CDS: -4.35 Total: 23.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.44 -9.94 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.854 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds