Wall clock time and date at job start Tue Mar 31 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00303 * 2 1 4 4 C 1.53000 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.08996 * 108.31689 * 57.38183 * 4 3 2 6 6 C 1.52564 * 108.51292 * 174.99886 * 4 3 2 7 7 C 1.50881 * 109.37850 * 206.25328 * 6 4 3 8 8 C 1.53889 * 110.10443 * 268.14390 * 7 6 4 9 9 N 1.47607 * 112.16695 * 40.54447 * 8 7 6 10 10 C 1.34774 * 118.64353 * 222.13907 * 9 8 7 11 11 O 1.21574 * 120.00257 * 354.79727 * 10 9 8 12 12 N 1.34776 * 119.99834 * 174.79129 * 10 9 8 13 13 C 1.39246 * 120.00288 * 185.69230 * 12 10 9 14 14 C 1.39682 * 119.57378 * 18.12990 * 13 12 10 15 15 C 1.38642 * 119.49620 * 180.02562 * 14 13 12 16 16 C 1.38352 * 118.67045 * 359.97438 * 15 14 13 17 17 C 1.40573 * 119.13147 * 0.02562 * 16 15 14 18 18 C 1.41330 * 119.78484 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00579 * 354.82067 * 18 17 16 20 20 C 1.40032 * 119.99738 * 174.81998 * 18 17 16 21 21 N 1.30739 * 119.99859 * 5.20333 * 20 18 17 22 22 Si 1.86801 * 120.00054 * 185.20134 * 20 18 17 23 23 H 1.48500 * 109.47093 * 94.99369 * 22 20 18 24 24 H 1.48496 * 109.47282 * 215.00031 * 22 20 18 25 25 H 1.48501 * 109.46957 * 335.00004 * 22 20 18 26 26 N 1.31904 * 119.57769 * 197.86878 * 13 12 10 27 27 C 1.44578 * 122.71179 * 42.12707 * 9 8 7 28 28 C 1.47095 * 108.51188 * 299.76641 * 4 3 2 29 29 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47005 * 299.99911 * 1 2 3 31 31 H 1.09002 * 109.46926 * 59.99815 * 1 2 3 32 32 H 1.09006 * 109.47476 * 59.99956 * 3 2 1 33 33 H 1.09004 * 109.47081 * 300.00084 * 3 2 1 34 34 H 1.08994 * 109.49625 * 326.23526 * 6 4 3 35 35 H 1.09008 * 109.48995 * 86.28486 * 6 4 3 36 36 H 1.09007 * 109.36588 * 28.32202 * 7 6 4 37 37 H 1.09002 * 109.36880 * 147.93259 * 7 6 4 38 38 H 1.09008 * 108.92344 * 279.86445 * 8 7 6 39 39 H 1.08990 * 108.87336 * 161.20079 * 8 7 6 40 40 H 0.97007 * 120.00112 * 5.69142 * 12 10 9 41 41 H 1.07997 * 120.25272 * 0.02607 * 14 13 12 42 42 H 1.07998 * 120.66404 * 180.02562 * 15 14 13 43 43 H 1.08003 * 120.43183 * 180.02562 * 16 15 14 44 44 H 0.96999 * 119.99712 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.44988 * 149.25031 * 27 9 8 46 46 H 1.09007 * 109.45078 * 29.32819 * 27 9 8 47 47 H 1.08994 * 109.32750 * 296.20341 * 28 4 3 48 48 H 1.09000 * 109.32664 * 55.85280 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8325 0.6016 -0.8724 6 6 4.1321 2.5830 -0.1268 7 6 5.4981 2.4892 -0.7606 8 6 6.5790 2.3658 0.3279 9 7 6.1622 1.4744 1.4281 10 6 6.4311 1.8438 2.6960 11 8 7.0879 2.8439 2.9116 12 7 5.9716 1.1046 3.7251 13 6 6.1466 1.5477 5.0335 14 6 6.4404 2.8922 5.2725 15 6 6.6148 3.3316 6.5758 16 6 6.4908 2.4173 7.6067 17 6 6.1938 1.0777 7.3013 18 6 6.0646 0.1320 8.3436 19 1 6.2757 0.4195 9.3630 20 6 5.6627 -1.1779 8.0546 21 7 5.5055 -1.5544 6.8125 22 14 5.3513 -2.3873 9.4437 23 1 3.9045 -2.3948 9.7786 24 1 5.7680 -3.7477 9.0185 25 1 6.1337 -1.9808 10.6387 26 7 6.0276 0.6936 6.0316 27 6 5.4774 0.2214 1.2017 28 6 3.9469 0.4571 1.2099 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.4841 3.2002 -0.7490 35 1 4.2206 3.0313 0.8629 36 1 5.5366 1.6135 -1.4087 37 1 5.6834 3.3843 -1.3544 38 1 6.7864 3.3560 0.7340 39 1 7.4894 1.9705 -0.1225 40 1 5.5190 0.2637 3.5542 41 1 6.5310 3.5842 4.4483 42 1 6.8421 4.3670 6.7822 43 1 6.6205 2.7288 8.6327 44 1 5.2268 -2.4617 6.6123 45 1 5.7403 -0.4836 1.9903 46 1 5.7766 -0.1865 0.2361 47 1 3.6763 1.0398 2.0903 48 1 3.4363 -0.5054 1.2433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:22 Heat of formation + Delta-G solvation = -26.132920 kcal Electronic energy + Delta-G solvation = -29508.488927 eV Core-core repulsion = 25564.046557 eV Total energy + Delta-G solvation = -3944.442369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64178 -38.95826 -37.94335 -36.97945 -34.43183 -34.15382 -33.28727 -32.46452 -30.32904 -29.11649 -28.43552 -26.81328 -25.70126 -25.30542 -23.82717 -22.53372 -21.53906 -20.73770 -20.38022 -19.11626 -17.99299 -17.41215 -16.73149 -16.34268 -16.03954 -15.78735 -15.54721 -15.03243 -14.79799 -14.60481 -14.34505 -14.22216 -13.75169 -13.67524 -13.32645 -13.00536 -12.86329 -12.71333 -12.42521 -12.22656 -11.97480 -11.92942 -11.68547 -11.41843 -11.23833 -11.01970 -10.96163 -10.86266 -10.77162 -10.66246 -10.61229 -10.53037 -10.05872 -9.85404 -9.78326 -9.22424 -9.00011 -8.44443 -7.96949 -7.61776 -6.99323 -6.37343 -4.45463 2.70640 2.92496 3.01007 3.11184 3.14857 3.28963 3.55171 3.73031 3.98239 4.26496 4.54671 4.57798 4.75048 4.83656 4.87571 4.99267 5.05697 5.11075 5.16297 5.19216 5.35223 5.43301 5.47920 5.51023 5.61699 5.65812 5.72142 5.82100 5.91868 5.96457 6.06055 6.10040 6.15229 6.22048 6.33195 6.50508 6.65116 6.82184 6.86790 6.95823 7.03316 7.12222 7.25473 7.57537 7.66098 7.96218 8.10180 8.22470 8.46577 8.75309 8.94487 9.10483 10.11100 10.35811 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.003528 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.184320 B = 7935.055080 C = 9600.650755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.061 3.939 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.112 4.112 7 C -0.128 4.128 8 C 0.131 3.869 9 N -0.623 5.623 10 C 0.705 3.295 11 O -0.571 6.571 12 N -0.658 5.658 13 C 0.374 3.626 14 C -0.313 4.313 15 C -0.050 4.050 16 C -0.293 4.293 17 C 0.281 3.719 18 C -0.437 4.437 19 H 0.084 0.916 20 C 0.072 3.928 21 N -0.723 5.723 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 N -0.509 5.509 27 C 0.110 3.890 28 C -0.136 4.136 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.404 0.596 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.270 0.730 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 1.675 -16.939 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.015 4.015 4 C -0.095 4.095 5 H 0.092 0.908 6 C -0.149 4.149 7 C -0.167 4.167 8 C 0.008 3.992 9 N -0.360 5.360 10 C 0.406 3.594 11 O -0.448 6.448 12 N -0.306 5.306 13 C 0.139 3.861 14 C -0.338 4.338 15 C -0.074 4.074 16 C -0.316 4.316 17 C 0.155 3.845 18 C -0.469 4.469 19 H 0.103 0.897 20 C -0.152 4.152 21 N -0.345 5.345 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.186 1.186 26 N -0.228 5.228 27 C -0.014 4.014 28 C -0.175 4.175 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.241 0.759 41 H 0.151 0.849 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.676 1.171 -17.142 18.434 hybrid contribution -0.533 -0.027 0.661 0.850 sum -7.209 1.144 -16.481 18.025 Atomic orbital electron populations 1.22720 0.81221 1.02698 0.99831 1.87869 1.19495 1.28075 1.95372 1.22778 0.94170 0.84562 1.00009 1.20076 0.92713 0.96894 0.99822 0.90782 1.21069 0.95973 0.95833 1.02046 1.21746 0.94787 1.02531 0.97611 1.21625 0.95775 0.95298 0.86487 1.46911 1.62284 1.22286 1.04554 1.15811 0.80023 0.83147 0.80407 1.90803 1.43420 1.27599 1.82931 1.42491 1.59342 1.24875 1.03891 1.18251 0.94711 0.89256 0.83930 1.21665 1.18942 0.95691 0.97508 1.20803 0.96390 0.97418 0.92816 1.21693 1.16714 0.95450 0.97704 1.18158 0.87866 0.89953 0.88571 1.19551 1.39552 0.93796 0.94030 0.89740 1.26020 0.93968 0.99087 0.96125 1.70124 1.28354 1.17208 1.18845 0.86344 0.79376 0.79445 0.81795 1.19581 1.20240 1.18567 1.68020 1.23141 1.33154 0.98503 1.21532 0.91643 0.85586 1.02659 1.21344 0.96004 1.01934 0.98174 0.89675 0.94049 0.94358 0.93261 0.93566 0.91836 0.90980 0.91546 0.90529 0.89139 0.92331 0.75903 0.84866 0.88465 0.88346 0.91928 0.90366 0.90268 0.91389 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.30 9.80 -35.23 -0.35 -4.64 16 3 C 0.06 0.60 5.16 37.16 0.19 0.79 16 4 C -0.08 -0.75 1.91 -93.68 -0.18 -0.93 16 5 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 6 C -0.11 -1.06 4.93 -28.02 -0.14 -1.20 16 7 C -0.13 -1.10 5.71 -27.33 -0.16 -1.26 16 8 C 0.13 1.53 6.07 -2.97 -0.02 1.51 16 9 N -0.62 -8.83 2.24 -178.31 -0.40 -9.23 16 10 C 0.70 13.58 8.04 -86.92 -0.70 12.88 16 11 O -0.57 -12.75 12.42 5.30 0.07 -12.68 16 12 N -0.66 -13.85 5.25 -15.79 -0.08 -13.93 16 13 C 0.37 9.54 7.52 -155.00 -1.17 8.37 16 14 C -0.31 -7.89 8.84 -38.89 -0.34 -8.23 16 15 C -0.05 -1.21 10.15 -39.39 -0.40 -1.60 16 16 C -0.29 -7.53 9.83 -38.66 -0.38 -7.91 16 17 C 0.28 7.88 6.55 -85.00 -0.56 7.33 16 18 C -0.44 -11.84 9.13 -37.73 -0.34 -12.19 16 19 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 20 C 0.07 1.84 5.49 -17.34 -0.10 1.75 16 21 N -0.72 -18.99 11.48 55.55 0.64 -18.35 16 22 Si 0.91 18.67 29.56 -169.99 -5.03 13.65 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 N -0.51 -14.17 7.91 -10.26 -0.08 -14.25 16 27 C 0.11 1.31 5.08 -4.09 -0.02 1.29 16 28 C -0.14 -1.57 4.82 -28.58 -0.14 -1.71 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.39 7.95 -51.93 -0.41 -0.02 16 34 H 0.06 0.51 7.72 -51.93 -0.40 0.11 16 35 H 0.07 0.87 7.48 -51.92 -0.39 0.48 16 36 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.22 7.02 -51.92 -0.36 0.85 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.40 7.83 6.48 -40.82 -0.26 7.57 16 41 H 0.13 3.33 5.28 -52.56 -0.28 3.05 16 42 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 44 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 45 H 0.08 1.00 6.38 -51.93 -0.33 0.67 16 46 H 0.08 0.77 8.07 -51.92 -0.42 0.35 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.09 1.00 7.36 -51.93 -0.38 0.62 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -32.16 377.89 -10.22 -42.38 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.36 Total: 11.10 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -3.33 Total: 0.27 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.07 Total: -55.77 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.28 Total: -17.32 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.16 -10.22 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.251 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds