Wall clock time and date at job start Tue Mar 31 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00145 * 2 1 4 4 C 1.53002 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.33166 * 305.35195 * 4 3 2 6 6 C 1.47155 * 109.21337 * 185.78511 * 4 3 2 7 7 C 1.52563 * 114.33840 * 177.04998 * 6 4 3 8 8 C 1.50880 * 109.35539 * 85.00204 * 7 6 4 9 9 C 1.53945 * 110.09921 * 268.10756 * 8 7 6 10 10 N 1.47609 * 112.13837 * 40.56403 * 9 8 7 11 11 C 1.34774 * 118.64285 * 222.13429 * 10 9 8 12 12 O 1.21575 * 120.00323 * 174.65975 * 11 10 9 13 13 N 1.34773 * 120.00323 * 354.65776 * 11 10 9 14 14 C 1.39246 * 120.00381 * 185.61598 * 13 11 10 15 15 C 1.39685 * 119.57390 * 18.12913 * 14 13 11 16 16 C 1.38646 * 119.49479 * 179.97438 * 15 14 13 17 17 C 1.38352 * 118.67312 * 359.97438 * 16 15 14 18 18 C 1.40575 * 119.12968 * 359.97438 * 17 16 15 19 19 C 1.41336 * 119.78590 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00053 * 0.02562 * 19 18 17 21 21 C 1.40030 * 119.99888 * 180.02562 * 19 18 17 22 22 N 1.30751 * 119.99952 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47098 * 89.99907 * 23 21 19 25 25 H 1.48498 * 109.47362 * 210.00202 * 23 21 19 26 26 H 1.48498 * 109.46896 * 330.00098 * 23 21 19 27 27 N 1.31910 * 119.57573 * 197.85294 * 14 13 11 28 28 C 1.44581 * 122.71518 * 42.15003 * 10 9 8 29 29 H 1.08999 * 109.47507 * 299.99895 * 1 2 3 30 30 H 1.08999 * 109.47199 * 59.99386 * 1 2 3 31 31 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46874 * 60.00420 * 3 2 1 33 33 H 1.08999 * 109.47736 * 300.00137 * 3 2 1 34 34 H 1.09002 * 108.51572 * 55.78552 * 6 4 3 35 35 H 1.08989 * 108.49248 * 298.30235 * 6 4 3 36 36 H 1.09003 * 109.49206 * 325.04511 * 7 6 4 37 37 H 1.09002 * 109.49343 * 204.96906 * 7 6 4 38 38 H 1.09000 * 109.36751 * 28.29809 * 8 7 6 39 39 H 1.09003 * 109.37068 * 147.91577 * 8 7 6 40 40 H 1.08997 * 108.95285 * 161.24226 * 9 8 7 41 41 H 1.09003 * 108.95191 * 279.87769 * 9 8 7 42 42 H 0.97004 * 119.99985 * 5.61762 * 13 11 10 43 43 H 1.07994 * 120.24943 * 0.02562 * 15 14 13 44 44 H 1.08003 * 120.66458 * 179.97438 * 16 15 14 45 45 H 1.07995 * 120.43747 * 179.97438 * 17 16 15 46 46 H 0.96991 * 119.99788 * 179.97438 * 22 21 19 47 47 H 1.09005 * 109.44418 * 29.29520 * 28 10 9 48 48 H 1.08997 * 109.44913 * 149.21340 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8478 0.5630 0.8398 6 6 4.1273 2.5245 0.1407 7 6 5.6505 2.5333 0.2263 8 6 6.2297 2.5253 -1.1669 9 6 6.4845 1.0780 -1.6256 10 7 5.3945 0.1672 -1.2242 11 6 5.7143 -1.0514 -0.7455 12 8 4.8436 -1.7840 -0.3172 13 7 6.9992 -1.4581 -0.7416 14 6 7.3169 -2.7582 -0.3571 15 6 6.3200 -3.7366 -0.3450 16 6 6.6383 -5.0307 0.0376 17 6 7.9437 -5.3144 0.3976 18 6 8.9018 -4.2862 0.3638 19 6 10.2392 -4.5605 0.7293 20 1 10.5224 -5.5575 1.0330 21 6 11.1971 -3.5396 0.6977 22 7 10.8541 -2.3325 0.3305 23 14 12.9646 -3.9019 1.1815 24 1 13.7311 -4.3188 -0.0201 25 1 13.5792 -2.6809 1.7617 26 1 12.9884 -4.9940 2.1875 27 7 8.5565 -3.0512 -0.0143 28 6 3.9981 0.5282 -1.3236 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.7273 2.9870 1.0431 35 1 3.8253 3.1271 -0.7158 36 1 5.9896 1.6490 0.7660 37 1 5.9802 3.4294 0.7521 38 1 5.5299 3.0037 -1.8520 39 1 7.1701 3.0765 -1.1706 40 1 6.5771 1.0620 -2.7115 41 1 7.4187 0.7270 -1.1871 42 1 7.7027 -0.8451 -1.0066 43 1 5.3093 -3.4871 -0.6323 44 1 5.8824 -5.8018 0.0542 45 1 8.2230 -6.3126 0.7007 46 1 11.5175 -1.6253 0.3090 47 1 3.8629 1.2327 -2.1444 48 1 3.4045 -0.3663 -1.5121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881146931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:00 Heat of formation + Delta-G solvation = -22.533146 kcal Electronic energy + Delta-G solvation = -29538.724706 eV Core-core repulsion = 25594.438434 eV Total energy + Delta-G solvation = -3944.286272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59460 -38.80275 -37.80482 -37.02320 -34.48394 -34.01094 -33.08666 -32.84990 -30.30893 -29.13252 -28.16645 -26.43846 -26.07294 -25.24508 -24.00964 -22.04340 -21.51876 -20.90494 -20.41018 -19.04127 -18.01883 -17.31730 -16.74282 -16.40202 -16.00618 -15.94581 -15.11433 -14.92485 -14.74563 -14.56869 -14.34010 -14.15104 -13.85016 -13.69884 -13.19526 -13.07143 -12.84385 -12.71617 -12.43387 -12.26104 -11.93898 -11.82193 -11.52834 -11.27018 -11.22772 -11.10222 -10.96989 -10.79454 -10.74221 -10.65226 -10.58755 -10.49302 -10.04349 -9.78177 -9.74994 -9.20234 -8.94698 -8.39603 -7.94330 -7.59959 -6.96810 -6.35417 -4.43898 2.75274 2.95466 3.01596 3.11179 3.14897 3.31063 3.66593 3.77220 3.98826 4.22531 4.54636 4.66854 4.75597 4.85888 4.86701 4.95660 5.12142 5.15476 5.21970 5.27136 5.34466 5.40281 5.46685 5.56039 5.58470 5.67523 5.78072 5.88260 5.90540 5.98906 6.00003 6.12380 6.18703 6.25336 6.33650 6.52086 6.70523 6.87563 6.89275 7.08183 7.10830 7.13779 7.26902 7.60416 7.68331 7.99726 8.11658 8.24963 8.48587 8.77083 8.97903 9.14974 10.13099 10.37214 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.003182 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.283255 B = 8798.486106 C =10157.229935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.071 3.929 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.106 3.894 10 N -0.623 5.623 11 C 0.702 3.298 12 O -0.558 6.558 13 N -0.660 5.660 14 C 0.374 3.626 15 C -0.312 4.312 16 C -0.049 4.049 17 C -0.292 4.292 18 C 0.281 3.719 19 C -0.437 4.437 20 H 0.084 0.916 21 C 0.072 3.928 22 N -0.725 5.725 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.262 1.262 27 N -0.510 5.510 28 C 0.148 3.852 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.135 0.865 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.269 0.731 47 H 0.068 0.932 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 14.205 -3.873 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.006 4.006 4 C -0.125 4.125 5 H 0.105 0.895 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.167 4.167 9 C -0.017 4.017 10 N -0.361 5.361 11 C 0.403 3.597 12 O -0.433 6.433 13 N -0.310 5.310 14 C 0.138 3.862 15 C -0.337 4.337 16 C -0.074 4.074 17 C -0.315 4.315 18 C 0.154 3.846 19 C -0.469 4.469 20 H 0.102 0.898 21 C -0.152 4.152 22 N -0.347 5.347 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.186 1.186 27 N -0.229 5.229 28 C 0.024 3.976 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.239 0.761 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.801 14.404 -3.653 18.976 hybrid contribution 0.378 -0.071 0.187 0.428 sum -11.423 14.333 -3.465 18.653 Atomic orbital electron populations 1.22722 0.81560 1.02778 0.99454 1.88040 1.19080 1.27336 1.95227 1.22508 0.93449 0.84942 0.99731 1.20820 0.92843 0.97710 1.01164 0.89508 1.20416 0.95961 0.96409 1.01861 1.21015 0.94759 1.02508 0.96991 1.21750 1.01924 0.95733 0.97253 1.21941 0.89913 0.90156 0.99709 1.46905 1.06484 1.13972 1.68695 1.15835 0.82976 0.81788 0.79091 1.90855 1.47916 1.53487 1.51091 1.42548 1.06738 1.13406 1.68269 1.18253 0.91699 0.82524 0.93684 1.21703 1.01011 0.93159 1.17777 1.20810 0.95277 0.95227 0.96095 1.21688 0.94390 0.99770 1.15690 1.18159 0.92934 0.85358 0.88127 1.19536 0.91692 0.96679 1.39012 0.89784 1.26023 1.00724 0.94686 0.93789 1.70129 1.34111 1.00867 1.29570 0.86358 0.82041 0.78952 0.79591 1.19520 1.20297 1.18616 1.68023 1.14172 1.21512 1.19157 1.21190 0.80566 1.00607 0.95213 0.94421 0.94381 0.89624 0.93463 0.93511 0.92443 0.92270 0.91203 0.91724 0.91481 0.90521 0.91763 0.90235 0.76078 0.84733 0.88447 0.88365 0.92006 0.91368 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.01 10.09 -35.23 -0.36 -5.36 16 3 C 0.07 0.75 5.26 37.16 0.20 0.94 16 4 C -0.11 -1.26 2.32 -92.44 -0.21 -1.47 16 5 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 6 C -0.11 -1.02 4.37 -29.76 -0.13 -1.15 16 7 C -0.12 -1.16 5.51 -28.02 -0.15 -1.31 16 8 C -0.13 -1.14 5.71 -27.30 -0.16 -1.30 16 9 C 0.11 1.21 5.96 -2.94 -0.02 1.20 16 10 N -0.62 -9.10 2.24 -178.27 -0.40 -9.50 16 11 C 0.70 13.85 8.04 -86.92 -0.70 13.15 16 12 O -0.56 -12.87 12.60 5.30 0.07 -12.81 16 13 N -0.66 -14.07 5.27 -15.79 -0.08 -14.15 16 14 C 0.37 9.63 7.52 -154.99 -1.17 8.47 16 15 C -0.31 -7.99 8.84 -38.89 -0.34 -8.33 16 16 C -0.05 -1.22 10.15 -39.39 -0.40 -1.62 16 17 C -0.29 -7.59 9.83 -38.66 -0.38 -7.97 16 18 C 0.28 7.93 6.55 -85.00 -0.56 7.37 16 19 C -0.44 -11.89 9.14 -37.73 -0.34 -12.23 16 20 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 21 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 22 N -0.72 -19.03 11.46 55.55 0.64 -18.39 16 23 Si 0.91 18.72 29.56 -169.99 -5.02 13.69 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 N -0.51 -14.26 7.89 -10.26 -0.08 -14.35 16 28 C 0.15 1.92 4.63 -4.08 -0.02 1.90 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.44 8.07 -51.93 -0.42 0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.06 0.46 7.36 -51.94 -0.38 0.08 16 36 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.99 5.72 -51.93 -0.30 0.70 16 42 H 0.40 7.73 6.25 -40.82 -0.25 7.48 16 43 H 0.14 3.45 5.28 -52.56 -0.28 3.17 16 44 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 45 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 46 H 0.27 6.38 8.29 -40.82 -0.34 6.04 16 47 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 48 H 0.09 1.44 6.82 -51.93 -0.35 1.08 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -32.92 378.58 -10.27 -43.19 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.36 Total: 11.18 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.37 Total: 0.79 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.07 Total: -56.39 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.29 Total: -18.17 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.92 -10.27 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.657 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds