Wall clock time and date at job start Tue Mar 31 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00143 * 2 1 4 4 C 1.52997 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.19100 * 54.56548 * 4 3 2 6 6 C 1.47048 * 109.28651 * 174.16041 * 4 3 2 7 7 C 1.52560 * 114.29569 * 183.11179 * 6 4 3 8 8 C 1.50883 * 109.35297 * 274.93870 * 7 6 4 9 9 C 1.53948 * 110.09421 * 91.88751 * 8 7 6 10 10 N 1.47612 * 112.14095 * 319.44044 * 9 8 7 11 11 C 1.34775 * 118.64079 * 137.87093 * 10 9 8 12 12 O 1.21568 * 120.00304 * 175.28525 * 11 10 9 13 13 N 1.34777 * 119.99896 * 355.27699 * 11 10 9 14 14 C 1.39245 * 119.99985 * 185.93671 * 13 11 10 15 15 C 1.39681 * 119.57510 * 18.23032 * 14 13 11 16 16 C 1.38645 * 119.49436 * 180.02562 * 15 14 13 17 17 C 1.38351 * 118.67162 * 359.97438 * 16 15 14 18 18 C 1.40572 * 119.13193 * 0.02562 * 17 16 15 19 19 C 1.41332 * 119.78885 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00058 * 359.97438 * 19 18 17 21 21 C 1.40025 * 120.00299 * 180.02562 * 19 18 17 22 22 N 1.30746 * 119.99730 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00305 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46956 * 89.99749 * 23 21 19 25 25 H 1.48496 * 109.47413 * 209.99837 * 23 21 19 26 26 H 1.48503 * 109.47082 * 330.00077 * 23 21 19 27 27 N 1.31909 * 119.57345 * 197.96634 * 14 13 11 28 28 C 1.44581 * 122.71773 * 317.88278 * 10 9 8 29 29 H 1.09007 * 109.46458 * 59.99878 * 1 2 3 30 30 H 1.08996 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47183 * 300.00579 * 1 2 3 32 32 H 1.08994 * 109.47216 * 59.99668 * 3 2 1 33 33 H 1.08992 * 109.46795 * 299.99618 * 3 2 1 34 34 H 1.09000 * 108.55917 * 61.85014 * 6 4 3 35 35 H 1.08997 * 108.50312 * 304.34031 * 6 4 3 36 36 H 1.08999 * 109.49489 * 154.97665 * 7 6 4 37 37 H 1.09001 * 109.51318 * 34.91348 * 7 6 4 38 38 H 1.09000 * 109.36660 * 331.69905 * 8 7 6 39 39 H 1.08998 * 109.37063 * 212.07838 * 8 7 6 40 40 H 1.09002 * 108.94754 * 198.75696 * 9 8 7 41 41 H 1.08990 * 108.94592 * 80.12510 * 9 8 7 42 42 H 0.97004 * 119.99886 * 5.92921 * 13 11 10 43 43 H 1.07996 * 120.25434 * 0.02830 * 15 14 13 44 44 H 1.08006 * 120.66344 * 180.02562 * 16 15 14 45 45 H 1.08004 * 120.43444 * 179.97438 * 17 16 15 46 46 H 0.97001 * 120.00172 * 180.02562 * 22 21 19 47 47 H 1.08991 * 109.45248 * 210.73733 * 28 10 9 48 48 H 1.09000 * 109.44590 * 330.68828 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8458 0.5611 -0.8378 6 6 4.1288 2.5225 -0.1406 7 6 5.6519 2.5276 -0.2287 8 6 6.2333 2.5201 1.1636 9 6 6.4853 1.0727 1.6237 10 7 5.3926 0.1640 1.2251 11 6 5.7087 -1.0560 0.7475 12 8 4.8293 -1.8557 0.4926 13 7 7.0000 -1.3894 0.5523 14 6 7.3222 -2.6000 -0.0555 15 6 6.3517 -3.2802 -0.7948 16 6 6.6742 -4.4857 -1.3988 17 6 7.9575 -4.9806 -1.2496 18 6 8.8894 -4.2489 -0.4931 19 6 10.2041 -4.7417 -0.3312 20 1 10.4899 -5.6780 -0.7876 21 6 11.1358 -4.0169 0.4219 22 7 10.7895 -2.8843 0.9757 23 14 12.8732 -4.6686 0.6365 24 1 13.7331 -4.1563 -0.4605 25 1 13.4144 -4.2148 1.9427 26 1 12.8534 -6.1530 0.5977 27 7 8.5416 -3.0872 0.0698 28 6 3.9971 0.5286 1.3255 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8462 -0.8900 34 1 3.8298 3.1268 0.7159 35 1 3.7284 2.9850 -1.0427 36 1 5.9827 3.4224 -0.7560 37 1 5.9884 1.6422 -0.7681 38 1 5.5356 3.0010 1.8493 39 1 7.1750 3.0690 1.1652 40 1 6.5796 1.0579 2.7095 41 1 7.4179 0.7190 1.1842 42 1 7.7048 -0.7860 0.8352 43 1 5.3576 -2.8702 -0.8951 44 1 5.9386 -5.0273 -1.9751 45 1 8.2395 -5.9172 -1.7076 46 1 11.4350 -2.3819 1.4970 47 1 3.4014 -0.3642 1.5153 48 1 3.8646 1.2345 2.1454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881146932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:03 Heat of formation + Delta-G solvation = -21.858823 kcal Electronic energy + Delta-G solvation = -29561.645810 eV Core-core repulsion = 25617.388779 eV Total energy + Delta-G solvation = -3944.257031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60613 -38.80970 -37.81147 -37.03693 -34.49054 -34.02137 -33.09238 -32.85463 -30.31091 -29.13419 -28.17735 -26.44328 -26.07582 -25.24708 -24.02233 -22.06352 -21.51568 -20.90813 -20.41444 -19.03977 -18.05327 -17.32689 -16.73627 -16.41217 -16.01007 -15.89635 -15.18855 -14.98122 -14.79293 -14.52127 -14.27271 -14.16945 -13.83715 -13.59056 -13.33090 -13.17420 -12.85304 -12.66424 -12.42752 -12.23361 -11.93554 -11.86661 -11.52076 -11.27103 -11.21759 -11.12785 -10.96614 -10.80962 -10.73953 -10.68042 -10.58829 -10.50320 -10.04227 -9.78639 -9.76687 -9.18956 -8.93115 -8.41472 -7.94752 -7.60253 -6.96771 -6.35384 -4.43923 2.73864 2.95524 3.03159 3.11280 3.14981 3.31025 3.65170 3.76691 3.98874 4.20863 4.53841 4.64947 4.74677 4.85048 4.86283 4.94421 5.11151 5.14905 5.21149 5.26317 5.33807 5.39605 5.46046 5.55554 5.57987 5.66055 5.77643 5.87056 5.90985 5.97271 5.99847 6.10618 6.17306 6.25318 6.31358 6.52089 6.70282 6.87588 6.89193 7.08002 7.09544 7.13558 7.26732 7.60353 7.68242 7.99679 8.11542 8.24880 8.48372 8.77057 8.97769 9.14792 10.13080 10.37250 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016546 B = 0.003122 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.847840 B = 8966.255304 C =10244.111980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.071 3.929 4 C -0.105 4.105 5 H 0.085 0.915 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.106 3.894 10 N -0.623 5.623 11 C 0.703 3.297 12 O -0.559 6.559 13 N -0.661 5.661 14 C 0.374 3.626 15 C -0.311 4.311 16 C -0.049 4.049 17 C -0.292 4.292 18 C 0.281 3.719 19 C -0.437 4.437 20 H 0.084 0.916 21 C 0.072 3.928 22 N -0.724 5.724 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.262 1.262 27 N -0.510 5.510 28 C 0.146 3.854 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.135 0.865 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.269 0.731 47 H 0.095 0.905 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 15.131 1.676 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.007 4.007 4 C -0.125 4.125 5 H 0.103 0.897 6 C -0.147 4.147 7 C -0.153 4.153 8 C -0.167 4.167 9 C -0.017 4.017 10 N -0.360 5.360 11 C 0.404 3.596 12 O -0.434 6.434 13 N -0.310 5.310 14 C 0.138 3.862 15 C -0.336 4.336 16 C -0.074 4.074 17 C -0.315 4.315 18 C 0.154 3.846 19 C -0.469 4.469 20 H 0.102 0.898 21 C -0.152 4.152 22 N -0.347 5.347 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.186 1.186 27 N -0.229 5.229 28 C 0.022 3.978 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.240 0.760 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.703 15.055 2.130 19.187 hybrid contribution 0.376 -0.072 -0.186 0.426 sum -11.327 14.983 1.945 18.883 Atomic orbital electron populations 1.22726 0.81508 1.02801 0.99465 1.88038 1.19133 1.27322 1.95236 1.22505 0.93405 0.84969 0.99779 1.20805 0.92912 0.97759 1.01025 0.89706 1.20394 0.95962 0.96398 1.01900 1.21017 0.94751 1.02497 0.96995 1.21757 1.01927 0.95767 0.97256 1.21940 0.89847 0.90128 0.99788 1.46890 1.06493 1.13842 1.68820 1.15825 0.83011 0.82137 0.78643 1.90849 1.47484 1.48920 1.56184 1.42555 1.06187 1.20453 1.61829 1.18250 0.91906 0.85263 0.90733 1.21683 1.01755 1.00431 1.09734 1.20808 0.95251 0.94849 0.96500 1.21687 0.95238 1.03313 1.11296 1.18157 0.92759 0.86260 0.87402 1.19535 0.93671 1.06163 1.27541 0.89781 1.26023 1.00449 0.94415 0.94344 1.70129 1.34072 1.10128 1.20341 0.86358 0.81992 0.80363 0.78229 1.19524 1.20289 1.18612 1.68024 1.14360 1.14976 1.25498 1.21208 0.80756 1.00694 0.95179 0.94417 0.89606 0.94353 0.93478 0.93423 0.92221 0.92425 0.91723 0.91195 0.91464 0.90533 0.91709 0.90278 0.76049 0.84791 0.88449 0.88363 0.91993 0.88705 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.96 10.09 -35.23 -0.36 -5.31 16 3 C 0.07 0.73 5.27 37.16 0.20 0.93 16 4 C -0.11 -1.22 2.31 -92.49 -0.21 -1.44 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 6 C -0.11 -0.99 4.38 -29.81 -0.13 -1.12 16 7 C -0.11 -1.11 5.51 -28.02 -0.15 -1.26 16 8 C -0.13 -1.12 5.71 -27.30 -0.16 -1.28 16 9 C 0.11 1.22 6.06 -2.94 -0.02 1.20 16 10 N -0.62 -9.13 2.24 -178.27 -0.40 -9.53 16 11 C 0.70 13.90 8.05 -86.92 -0.70 13.20 16 12 O -0.56 -12.95 12.53 5.31 0.07 -12.89 16 13 N -0.66 -14.09 5.28 -15.79 -0.08 -14.17 16 14 C 0.37 9.64 7.51 -154.99 -1.16 8.47 16 15 C -0.31 -7.98 8.83 -38.89 -0.34 -8.32 16 16 C -0.05 -1.22 10.15 -39.39 -0.40 -1.62 16 17 C -0.29 -7.59 9.83 -38.66 -0.38 -7.97 16 18 C 0.28 7.93 6.55 -85.00 -0.56 7.37 16 19 C -0.44 -11.89 9.14 -37.74 -0.34 -12.23 16 20 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 21 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 22 N -0.72 -19.05 11.46 55.55 0.64 -18.42 16 23 Si 0.91 18.73 29.56 -169.99 -5.02 13.70 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 N -0.51 -14.27 7.89 -10.26 -0.08 -14.35 16 28 C 0.15 1.89 4.72 -4.08 -0.02 1.87 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.06 0.46 7.36 -51.93 -0.38 0.07 16 35 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 38 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.98 5.54 -51.93 -0.29 0.69 16 42 H 0.40 7.74 6.18 -40.82 -0.25 7.49 16 43 H 0.13 3.45 5.30 -52.54 -0.28 3.17 16 44 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 45 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 46 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 47 H 0.09 1.50 6.67 -51.93 -0.35 1.16 16 48 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -32.98 378.31 -10.25 -43.24 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.35 Total: 11.08 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -3.37 Total: 0.95 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.07 Total: -56.47 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.29 Total: -18.20 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.98 -10.25 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.377 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds