Wall clock time and date at job start Tue Mar 31 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99930 * 2 1 4 4 C 1.52994 * 109.47130 * 210.00232 * 3 2 1 5 5 C 1.53007 * 109.46851 * 299.99415 * 4 3 2 6 6 C 1.53001 * 109.47067 * 300.00395 * 5 4 3 7 7 C 1.53005 * 109.46708 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46807 * 174.99910 * 7 6 5 9 9 C 1.34777 * 120.00099 * 179.97438 * 8 7 6 10 10 O 1.21577 * 119.99827 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00422 * 179.97438 * 9 8 7 12 12 C 1.39239 * 120.00405 * 185.80033 * 11 9 8 13 13 C 1.39693 * 119.57304 * 18.80792 * 12 11 9 14 14 C 1.38641 * 119.49495 * 180.02562 * 13 12 11 15 15 C 1.38361 * 118.67060 * 359.73341 * 14 13 12 16 16 C 1.40572 * 119.12979 * 0.53335 * 15 14 13 17 17 C 1.41328 * 119.78467 * 179.72881 * 16 15 14 18 18 H 1.08003 * 120.00133 * 6.98045 * 17 16 15 19 19 C 1.40024 * 120.00038 * 186.97700 * 17 16 15 20 20 N 1.30746 * 120.00260 * 181.93444 * 19 17 16 21 21 Si 1.86806 * 119.99911 * 1.93817 * 19 17 16 22 22 H 1.48496 * 109.47403 * 179.97438 * 21 19 17 23 23 H 1.48504 * 109.46951 * 299.99645 * 21 19 17 24 24 H 1.48492 * 109.47090 * 59.99491 * 21 19 17 25 25 N 1.31900 * 119.57825 * 198.83121 * 12 11 9 26 26 C 1.52992 * 109.47251 * 60.00154 * 6 5 4 27 27 C 1.53001 * 109.47300 * 89.99523 * 3 2 1 28 28 H 1.09005 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47607 * 299.99970 * 1 2 3 30 30 H 1.09001 * 109.47143 * 60.00478 * 1 2 3 31 31 H 1.09002 * 109.46482 * 329.99635 * 3 2 1 32 32 H 1.09002 * 109.46945 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47798 * 59.99884 * 4 3 2 34 34 H 1.08997 * 109.47031 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.46791 * 60.00311 * 5 4 3 36 36 H 1.08996 * 109.47246 * 299.99637 * 6 5 4 37 37 H 1.08996 * 109.46984 * 55.00158 * 7 6 5 38 38 H 1.09002 * 109.47139 * 294.99869 * 7 6 5 39 39 H 0.97001 * 120.00437 * 359.97438 * 8 7 6 40 40 H 0.97001 * 119.99346 * 5.81122 * 11 9 8 41 41 H 1.08001 * 120.25043 * 0.02562 * 13 12 11 42 42 H 1.08001 * 120.66587 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.43474 * 180.26074 * 15 14 13 44 44 H 0.96992 * 119.99851 * 354.83157 * 20 19 17 45 45 H 1.09004 * 109.47729 * 59.99723 * 26 6 5 46 46 H 1.08996 * 109.47442 * 179.97438 * 26 6 5 47 47 H 1.08996 * 109.47246 * 179.97438 * 27 3 2 48 48 H 1.09005 * 109.47204 * 300.00749 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2634 -0.7213 5 6 4.2927 0.2894 0.0001 6 6 4.5000 0.7554 1.4426 7 6 5.4334 -0.2189 2.1640 8 7 5.7273 0.2896 3.5061 9 6 6.5345 -0.4083 4.3294 10 8 7.0191 -1.4597 3.9581 11 7 6.8054 0.0598 5.5639 12 6 7.7324 -0.5963 6.3694 13 6 8.6527 -1.4722 5.7887 14 6 9.5746 -2.1251 6.5924 15 6 9.5574 -1.8823 7.9544 16 6 8.6026 -0.9940 8.4792 17 6 8.5689 -0.7404 9.8691 18 1 9.3426 -1.1377 10.5095 19 6 7.5326 0.0261 10.4160 20 7 7.5218 0.2926 11.6959 21 14 6.1653 0.6679 9.3168 22 1 5.1977 1.4447 10.1326 23 1 6.7443 1.5444 8.2671 24 1 5.4667 -0.4755 8.6769 25 7 7.7299 -0.3833 7.6711 26 6 3.1514 0.7975 2.1638 27 6 2.2175 1.7715 1.4425 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.3449 1.9994 -0.5139 32 1 3.8023 2.2591 -0.7209 33 1 3.2111 0.9315 -1.7489 34 1 5.2536 0.2597 -0.5135 35 1 3.8494 -0.7063 0.0001 36 1 4.9433 1.7511 1.4426 37 1 6.3617 -0.3169 1.6013 38 1 4.9513 -1.1934 2.2423 39 1 5.3410 1.1287 3.8022 40 1 6.3544 0.8538 5.8912 41 1 8.6460 -1.6395 4.7217 42 1 10.2949 -2.8059 6.1633 43 1 10.2654 -2.3723 8.6064 44 1 8.1889 -0.1020 12.2791 45 1 2.7080 -0.1983 2.1638 46 1 3.2991 1.1291 3.1915 47 1 2.6613 2.7671 1.4425 48 1 1.2567 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:25 Heat of formation + Delta-G solvation = -64.202087 kcal Electronic energy + Delta-G solvation = -28428.363006 eV Core-core repulsion = 24482.269833 eV Total energy + Delta-G solvation = -3946.093172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.40813 -39.75223 -38.32349 -36.95742 -34.64855 -34.30385 -33.42950 -31.16760 -31.08091 -31.00152 -29.23286 -26.97383 -25.74369 -25.18417 -23.13903 -22.37077 -21.73583 -21.32873 -20.34480 -19.88225 -18.61919 -17.81989 -17.04711 -16.60891 -16.37368 -15.73530 -15.61890 -15.16437 -14.94818 -14.77420 -14.43060 -14.23099 -13.95867 -13.73734 -13.58843 -13.36730 -13.03629 -12.76122 -12.71097 -12.53115 -12.33507 -12.18082 -11.91146 -11.79990 -11.57620 -11.43002 -11.17015 -10.87832 -10.76428 -10.71093 -10.40477 -10.33846 -9.96702 -9.80631 -9.64179 -9.38722 -9.12785 -8.97337 -8.50335 -7.77010 -7.31283 -7.21274 -4.73835 2.43631 2.69222 2.78225 3.41890 3.47947 3.55108 3.68933 3.98318 4.29319 4.31211 4.36690 4.40743 4.45547 4.69083 4.76691 4.78219 4.87540 4.96732 4.98412 5.11326 5.17863 5.20516 5.28107 5.38551 5.45266 5.55806 5.58788 5.65419 5.69341 5.78462 5.87032 5.90579 5.93068 6.00760 6.13538 6.20834 6.40773 6.47784 6.57942 6.73044 6.85478 6.95502 7.21149 7.37289 7.48162 7.66233 7.79763 7.96433 8.24302 8.36730 8.67603 8.81109 9.45019 10.03320 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002482 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.610292 B =11276.737093 C =12390.306238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.087 3.913 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.098 4.098 7 C 0.145 3.855 8 N -0.745 5.745 9 C 0.708 3.292 10 O -0.564 6.564 11 N -0.668 5.668 12 C 0.405 3.595 13 C -0.310 4.310 14 C -0.034 4.034 15 C -0.280 4.280 16 C 0.275 3.725 17 C -0.477 4.477 18 H 0.083 0.917 19 C 0.043 3.957 20 N -0.809 5.809 21 Si 1.159 2.841 22 H -0.334 1.334 23 H -0.285 1.285 24 H -0.294 1.294 25 N -0.601 5.601 26 C -0.111 4.111 27 C -0.141 4.141 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.395 0.605 40 H 0.403 0.597 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.283 0.717 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 5.479 -23.414 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.029 3.971 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.116 4.116 7 C 0.021 3.979 8 N -0.402 5.402 9 C 0.408 3.592 10 O -0.440 6.440 11 N -0.316 5.316 12 C 0.174 3.826 13 C -0.335 4.335 14 C -0.058 4.058 15 C -0.303 4.303 16 C 0.151 3.849 17 C -0.510 4.510 18 H 0.101 0.899 19 C -0.178 4.178 20 N -0.431 5.431 21 Si 0.995 3.005 22 H -0.268 1.268 23 H -0.214 1.214 24 H -0.222 1.222 25 N -0.327 5.327 26 C -0.148 4.148 27 C -0.179 4.179 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.238 0.762 41 H 0.159 0.841 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.855 5.793 -23.329 27.745 hybrid contribution 1.476 -0.551 0.259 1.597 sum -12.379 5.242 -23.070 26.701 Atomic orbital electron populations 1.22773 0.81473 1.02707 0.99699 1.87947 1.19171 1.27592 1.94999 1.22143 0.94807 0.84654 0.95456 1.21616 0.93940 1.00340 0.99220 1.21397 0.99271 1.00103 0.93754 1.21411 0.95454 0.99356 0.95419 1.21230 0.98604 0.97168 0.80929 1.45139 1.52860 1.26410 1.15759 1.15726 0.79724 0.83519 0.80222 1.90851 1.54904 1.22659 1.75595 1.42353 1.43937 1.31173 1.14106 1.17796 0.86792 0.90732 0.87293 1.21555 1.02000 1.08263 1.01648 1.20931 0.95628 0.95808 0.93462 1.21583 1.05983 1.07685 0.95023 1.18257 0.86794 0.87246 0.92608 1.20700 1.09895 1.29057 0.91328 0.89887 1.27765 1.00835 0.91766 0.97439 1.70642 1.34180 1.33067 1.05191 0.81760 0.71456 0.76419 0.70854 1.26796 1.21365 1.22241 1.65861 1.30863 1.33441 1.02528 1.21502 0.94345 1.00646 0.98331 1.22023 1.00256 0.99494 0.96087 0.89723 0.94164 0.94303 0.92438 0.90702 0.91246 0.91613 0.90597 0.90634 0.91495 0.91392 0.77091 0.76220 0.84098 0.87635 0.87719 0.90629 0.90796 0.91958 0.91036 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.16 9.00 -35.23 -0.32 -3.47 16 3 C 0.09 0.58 2.92 -26.73 -0.08 0.50 16 4 C -0.11 -0.70 5.66 -26.73 -0.15 -0.85 16 5 C -0.11 -0.78 5.06 -26.73 -0.14 -0.91 16 6 C -0.10 -0.75 2.23 -90.62 -0.20 -0.95 16 7 C 0.14 1.54 5.06 -4.04 -0.02 1.52 16 8 N -0.74 -9.13 5.29 -65.23 -0.34 -9.47 16 9 C 0.71 12.42 8.40 -86.92 -0.73 11.69 16 10 O -0.56 -11.80 13.14 5.30 0.07 -11.73 16 11 N -0.67 -12.80 5.42 -15.79 -0.09 -12.89 16 12 C 0.41 9.58 7.51 -155.00 -1.16 8.41 16 13 C -0.31 -7.22 8.83 -38.89 -0.34 -7.56 16 14 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 15 C -0.28 -6.85 9.83 -38.66 -0.38 -7.23 16 16 C 0.28 7.38 6.39 -85.00 -0.54 6.84 16 17 C -0.48 -13.24 9.58 -37.74 -0.36 -13.60 16 18 H 0.08 2.29 8.05 -52.48 -0.42 1.87 16 19 C 0.04 1.18 5.52 -17.34 -0.10 1.08 16 20 N -0.81 -22.28 13.65 55.55 0.76 -21.52 16 21 Si 1.16 28.43 25.53 -169.99 -4.34 24.08 16 22 H -0.33 -8.07 7.11 56.52 0.40 -7.67 16 23 H -0.29 -6.70 6.70 56.52 0.38 -6.32 16 24 H -0.29 -7.37 7.10 56.52 0.40 -6.97 16 25 N -0.60 -15.54 4.58 -10.26 -0.05 -15.59 16 26 C -0.11 -0.88 4.93 -26.73 -0.13 -1.01 16 27 C -0.14 -0.93 5.63 -26.73 -0.15 -1.08 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 30 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.40 3.76 7.68 -40.82 -0.31 3.45 16 40 H 0.40 6.71 8.84 -40.82 -0.36 6.35 16 41 H 0.14 3.24 5.33 -52.50 -0.28 2.96 16 42 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.28 7.45 8.72 -40.82 -0.36 7.09 16 45 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 46 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -32.62 380.06 -9.97 -42.58 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.59 Total: 5.32 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.79 Total: -3.05 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.28 Total: -59.47 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.25 Total: -15.20 kcal Atomic # 14 Polarization: 28.43 SS G_CDS: -4.34 Total: 24.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.62 -9.97 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.618 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds